RNA–Protein interactions for RNA: ENST00000518040.5

SH2D4A-202, Transcript of SH2 domain containing 4A, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SH2D4A, Length 1,697 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH2D4A-202ENST00000518040 NISCHQ9Y2I1 1504 aa25.3■■□□□ 1.64
SH2D4A-202ENST00000518040 AEBP2Q6ZN18 517 aaPredicted RBP25.05■■□□□ 1.6
SH2D4A-202ENST00000518040 CHIC1Q5VXU3 224 aa23.86■■□□□ 1.41
SH2D4A-202ENST00000518040 ABCC9O60706 1549 aa23.39■■□□□ 1.33
SH2D4A-202ENST00000518040 CCDC180Q9P1Z9 1646 aa22.97■■□□□ 1.27
SH2D4A-202ENST00000518040 DNAJC5BQ9UF47 199 aa22.36■■□□□ 1.17
SH2D4A-202ENST00000518040 RB1CC1Q8TDY2 1594 aa22.12■■□□□ 1.13
SH2D4A-202ENST00000518040 NACADO15069 1562 aa21.86■■□□□ 1.09
SH2D4A-202ENST00000518040 PABPN1Q86U42 306 aaKnown RBP eCLIP21.67■■□□□ 1.06
SH2D4A-202ENST00000518040 DCAF8L2P0C7V8 631 aa21.54■■□□□ 1.04
SH2D4A-202ENST00000518040 UNC13AQ9UPW8 1703 aa21.51■■□□□ 1.03
SH2D4A-202ENST00000518040 MYO15BQ96JP2 1530 aa21.43■■□□□ 1.02
SH2D4A-202ENST00000518040 BICRAQ9NZM4 1560 aa21.41■■□□□ 1.02
SH2D4A-202ENST00000518040 SENP3Q9H4L4 574 aaPredicted RBP21.37■■□□□ 1.01
SH2D4A-202ENST00000518040 SHROOM4Q9ULL8 1493 aa21.23■□□□□ 0.99
SH2D4A-202ENST00000518040 CECR2Q9BXF3 1484 aa21.17■□□□□ 0.98
SH2D4A-202ENST00000518040 CC2D2AQ9P2K1 1620 aa21.12■□□□□ 0.97
SH2D4A-202ENST00000518040 PHF23Q9BUL5 403 aaPredicted RBP21.09■□□□□ 0.97
SH2D4A-202ENST00000518040 DNAJC5Q9H3Z4 198 aa21.02■□□□□ 0.96
SH2D4A-202ENST00000518040 EIF4G1Q04637 1599 aaKnown RBP20.97■□□□□ 0.95
SH2D4A-202ENST00000518040 DCAF1Q9Y4B6 1507 aa20.93■□□□□ 0.94
SH2D4A-202ENST00000518040 ZCCHC6Q5VYS8 1495 aaKnown RBP20.85■□□□□ 0.93
SH2D4A-202ENST00000518040 SCRIBQ14160 1630 aa20.8■□□□□ 0.92
SH2D4A-202ENST00000518040 CUX2O14529 1486 aa20.48■□□□□ 0.87
SH2D4A-202ENST00000518040 ERCC6Q03468 1493 aa20.29■□□□□ 0.84
SH2D4A-202ENST00000518040 NCAPD3P42695 1498 aa20.17■□□□□ 0.82
SH2D4A-202ENST00000518040 ATAD2BQ9ULI0 1458 aa20■□□□□ 0.79
SH2D4A-202ENST00000518040 HMGXB3Q12766 1538 aa19.98■□□□□ 0.79
SH2D4A-202ENST00000518040 SMARCA2P51531 1590 aa19.97■□□□□ 0.79
SH2D4A-202ENST00000518040 NESP48681 1621 aa19.91■□□□□ 0.78
SH2D4A-202ENST00000518040 FOXD1Q16676 465 aa19.91■□□□□ 0.78
SH2D4A-202ENST00000518040 THOC2Q8NI27 1593 aaKnown RBP19.87■□□□□ 0.77
SH2D4A-202ENST00000518040 SMARCA4P51532 1647 aa19.83■□□□□ 0.77
SH2D4A-202ENST00000518040 TRIM41Q8WV44 630 aa19.83■□□□□ 0.76
SH2D4A-202ENST00000518040 LAMC3Q9Y6N6 1575 aa19.8■□□□□ 0.76
SH2D4A-202ENST00000518040 BAZ1BQ9UIG0 1483 aaKnown RBP19.79■□□□□ 0.76
SH2D4A-202ENST00000518040 PDS5BQ9NTI5 1447 aa19.73■□□□□ 0.75
SH2D4A-202ENST00000518040 BAZ1AQ9NRL2 1556 aaPredicted RBP19.71■□□□□ 0.75
SH2D4A-202ENST00000518040 PEG3Q9GZU2 1588 aa19.69■□□□□ 0.74
SH2D4A-202ENST00000518040 KIF21AQ7Z4S6 1674 aa19.66■□□□□ 0.74
SH2D4A-202ENST00000518040 MRC2Q9UBG0 1479 aa19.55■□□□□ 0.72
SH2D4A-202ENST00000518040 CADPSQ9ULU8 1353 aa19.52■□□□□ 0.72
SH2D4A-202ENST00000518040 WDR62O43379 1518 aa19.51■□□□□ 0.71
SH2D4A-202ENST00000518040 OSCARQ8IYS5 282 aa19.45■□□□□ 0.7
SH2D4A-202ENST00000518040 MROH2BQ7Z745 1585 aa19.44■□□□□ 0.7
SH2D4A-202ENST00000518040 CEP164Q9UPV0 1460 aa19.37■□□□□ 0.69
SH2D4A-202ENST00000518040 FANCD2Q9BXW9 1451 aa19.28■□□□□ 0.68
SH2D4A-202ENST00000518040 CFTRP13569 1480 aa19.19■□□□□ 0.66
SH2D4A-202ENST00000518040 RIMBP3CA6NJZ7 1639 aa19.17■□□□□ 0.66
SH2D4A-202ENST00000518040 RIMBP3BA6NNM3 1639 aa19.17■□□□□ 0.66
SH2D4A-202ENST00000518040 RIMBP3Q9UFD9 1639 aa19.17■□□□□ 0.66
SH2D4A-202ENST00000518040 WIZO95785 1651 aa19.16■□□□□ 0.66
SH2D4A-202ENST00000518040 URB2Q14146 1524 aaKnown RBP19.12■□□□□ 0.65
SH2D4A-202ENST00000518040 ARHGEF11O15085 1522 aa19.09■□□□□ 0.65
SH2D4A-202ENST00000518040 PLPPR3Q6T4P5 718 aa19.08■□□□□ 0.65
SH2D4A-202ENST00000518040 IFT140Q96RY7 1462 aa19.02■□□□□ 0.63
SH2D4A-202ENST00000518040 CYB5RLQ6IPT4 315 aa18.97■□□□□ 0.63
SH2D4A-202ENST00000518040 TRHP20396 242 aaPredicted RBP18.95■□□□□ 0.62
SH2D4A-202ENST00000518040 ZNF608Q9ULD9 1512 aaPredicted RBP18.95■□□□□ 0.62
SH2D4A-202ENST00000518040 TOP2AP11388 1531 aaKnown RBP18.95■□□□□ 0.62
SH2D4A-202ENST00000518040 PRDM2Q13029 1718 aa18.93■□□□□ 0.62
SH2D4A-202ENST00000518040 ABCC8Q09428 1581 aa18.87■□□□□ 0.61
SH2D4A-202ENST00000518040 RSF1Q96T23 1441 aaPredicted RBP18.87■□□□□ 0.61
SH2D4A-202ENST00000518040 TOPBP1Q92547 1522 aa18.85■□□□□ 0.61
SH2D4A-202ENST00000518040 EIF4G3O43432 1585 aaKnown RBP18.85■□□□□ 0.61
SH2D4A-202ENST00000518040 ARAP1Q96P48 1450 aa18.84■□□□□ 0.61
SH2D4A-202ENST00000518040 CHD1O14646 1710 aa18.79■□□□□ 0.6
SH2D4A-202ENST00000518040 DNMBPQ6XZF7 1577 aa18.75■□□□□ 0.59
SH2D4A-202ENST00000518040 FBLN2P98095 1184 aa18.74■□□□□ 0.59
SH2D4A-202ENST00000518040 AQRO60306 1485 aaKnown RBP eCLIP18.73■□□□□ 0.59
SH2D4A-202ENST00000518040 CCDC88BA6NC98 1476 aa18.71■□□□□ 0.59
SH2D4A-202ENST00000518040 TARBP1Q13395 1621 aaKnown RBP18.71■□□□□ 0.59
SH2D4A-202ENST00000518040 PPP6R1Q9UPN7 881 aa18.64■□□□□ 0.57
SH2D4A-202ENST00000518040 POLA1P09884 1462 aaPredicted RBP18.62■□□□□ 0.57
SH2D4A-202ENST00000518040 MSH5O43196 834 aa18.62■□□□□ 0.57
SH2D4A-202ENST00000518040 PIAS4Q8N2W9 510 aaPredicted RBP18.6■□□□□ 0.57
SH2D4A-202ENST00000518040 CLASP1Q7Z460 1538 aa18.6■□□□□ 0.57
SH2D4A-202ENST00000518040 WDR97A6NE52 1622 aa18.59■□□□□ 0.57
SH2D4A-202ENST00000518040 ADRA2BP18089 450 aa18.58■□□□□ 0.57
SH2D4A-202ENST00000518040 SYNJ1O43426 1573 aa18.58■□□□□ 0.56
SH2D4A-202ENST00000518040 CHMP7Q8WUX9 453 aaPredicted RBP18.56■□□□□ 0.56
SH2D4A-202ENST00000518040 SOGA1O94964 1423 aa18.55■□□□□ 0.56
SH2D4A-202ENST00000518040 SNAPC4Q5SXM2 1469 aa18.54■□□□□ 0.56
SH2D4A-202ENST00000518040 TDRD9Q8NDG6 1382 aaKnown RBP18.54■□□□□ 0.56
SH2D4A-202ENST00000518040 MAGI1Q96QZ7 1491 aaPredicted RBP18.53■□□□□ 0.56
SH2D4A-202ENST00000518040 RAD54L2Q9Y4B4 1467 aa18.52■□□□□ 0.56
SH2D4A-202ENST00000518040 SYNJ2O15056 1496 aa18.46■□□□□ 0.55
SH2D4A-202ENST00000518040 GRIN2BQ13224 1484 aa18.46■□□□□ 0.55
SH2D4A-202ENST00000518040 GAPVD1Q14C86 1478 aa18.45■□□□□ 0.54
SH2D4A-202ENST00000518040 FGD5Q6ZNL6 1462 aa18.42■□□□□ 0.54
SH2D4A-202ENST00000518040 CUX1P39880 1505 aa18.3■□□□□ 0.52
SH2D4A-202ENST00000518040 PBRM1Q86U86 1689 aa18.3■□□□□ 0.52
SH2D4A-202ENST00000518040 ABCA10Q8WWZ4 1543 aa18.22■□□□□ 0.51
SH2D4A-202ENST00000518040 GRIN2AQ12879 1464 aa18.21■□□□□ 0.51
SH2D4A-202ENST00000518040 ABCA5Q8WWZ7 1642 aa18.2■□□□□ 0.5
SH2D4A-202ENST00000518040 ERCC6L2Q5T890 1561 aa18.19■□□□□ 0.5
SH2D4A-202ENST00000518040 CEP170Q5SW79 1584 aa18.18■□□□□ 0.5
SH2D4A-202ENST00000518040 NUP160Q12769 1436 aa18.17■□□□□ 0.5
SH2D4A-202ENST00000518040 KIF13AQ9H1H9 1805 aa18.14■□□□□ 0.5
SH2D4A-202ENST00000518040 SHROOM2Q13796 1616 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms