RNA–Protein interactions for RNA: ENST00000517403.5

PABPC1-202, Transcript of poly(A) binding protein cytoplasmic 1, humanhuman

TSL 5

Gene PABPC1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC1-202ENST00000517403 NISCHQ9Y2I1 1504 aa22.08■■□□□ 1.13
PABPC1-202ENST00000517403 CCDC180Q9P1Z9 1646 aa19.8■□□□□ 0.76
PABPC1-202ENST00000517403 ABCC9O60706 1549 aa19.73■□□□□ 0.75
PABPC1-202ENST00000517403 CHIC1Q5VXU3 224 aa19■□□□□ 0.63
PABPC1-202ENST00000517403 AEBP2Q6ZN18 517 aaPredicted RBP18.76■□□□□ 0.59
PABPC1-202ENST00000517403 RB1CC1Q8TDY2 1594 aa18.72■□□□□ 0.59
PABPC1-202ENST00000517403 NACADO15069 1562 aa18.6■□□□□ 0.57
PABPC1-202ENST00000517403 UNC13AQ9UPW8 1703 aa18.55■□□□□ 0.56
PABPC1-202ENST00000517403 DNAJC5BQ9UF47 199 aa18.51■□□□□ 0.55
PABPC1-202ENST00000517403 BICRAQ9NZM4 1560 aa18.39■□□□□ 0.53
PABPC1-202ENST00000517403 ZCCHC6Q5VYS8 1495 aaKnown RBP18.38■□□□□ 0.53
PABPC1-202ENST00000517403 MYO15BQ96JP2 1530 aa18.38■□□□□ 0.53
PABPC1-202ENST00000517403 DCAF8L2P0C7V8 631 aa18.37■□□□□ 0.53
PABPC1-202ENST00000517403 PABPN1Q86U42 306 aaKnown RBP eCLIP18.33■□□□□ 0.52
PABPC1-202ENST00000517403 DCAF1Q9Y4B6 1507 aa18.19■□□□□ 0.5
PABPC1-202ENST00000517403 SCRIBQ14160 1630 aa18.11■□□□□ 0.49
PABPC1-202ENST00000517403 SHROOM4Q9ULL8 1493 aa17.89■□□□□ 0.45
PABPC1-202ENST00000517403 CC2D2AQ9P2K1 1620 aa17.85■□□□□ 0.45
PABPC1-202ENST00000517403 EIF4G1Q04637 1599 aaKnown RBP17.82■□□□□ 0.44
PABPC1-202ENST00000517403 CECR2Q9BXF3 1484 aa17.7■□□□□ 0.42
PABPC1-202ENST00000517403 SMARCA4P51532 1647 aa17.26■□□□□ 0.35
PABPC1-202ENST00000517403 ATAD2BQ9ULI0 1458 aa17.2■□□□□ 0.34
PABPC1-202ENST00000517403 NCAPD3P42695 1498 aa17.19■□□□□ 0.34
PABPC1-202ENST00000517403 HMGXB3Q12766 1538 aa17.11■□□□□ 0.33
PABPC1-202ENST00000517403 MROH2BQ7Z745 1585 aa17.11■□□□□ 0.33
PABPC1-202ENST00000517403 BAZ1AQ9NRL2 1556 aaPredicted RBP17.08■□□□□ 0.32
PABPC1-202ENST00000517403 SMARCA2P51531 1590 aa17.07■□□□□ 0.32
PABPC1-202ENST00000517403 PEG3Q9GZU2 1588 aa17.07■□□□□ 0.32
PABPC1-202ENST00000517403 NESP48681 1621 aa17.06■□□□□ 0.32
PABPC1-202ENST00000517403 BAZ1BQ9UIG0 1483 aaKnown RBP16.99■□□□□ 0.31
PABPC1-202ENST00000517403 WIZO95785 1651 aa16.92■□□□□ 0.3
PABPC1-202ENST00000517403 THOC2Q8NI27 1593 aaKnown RBP16.89■□□□□ 0.29
PABPC1-202ENST00000517403 ERCC6Q03468 1493 aa16.88■□□□□ 0.29
PABPC1-202ENST00000517403 PHF23Q9BUL5 403 aaPredicted RBP16.88■□□□□ 0.29
PABPC1-202ENST00000517403 CUX2O14529 1486 aa16.86■□□□□ 0.29
PABPC1-202ENST00000517403 KIF21AQ7Z4S6 1674 aa16.85■□□□□ 0.29
PABPC1-202ENST00000517403 LAMC3Q9Y6N6 1575 aa16.8■□□□□ 0.28
PABPC1-202ENST00000517403 DNAJC5Q9H3Z4 198 aa16.73■□□□□ 0.27
PABPC1-202ENST00000517403 RSF1Q96T23 1441 aaPredicted RBP16.7■□□□□ 0.26
PABPC1-202ENST00000517403 TOP2AP11388 1531 aaKnown RBP16.63■□□□□ 0.25
PABPC1-202ENST00000517403 CADPSQ9ULU8 1353 aa16.63■□□□□ 0.25
PABPC1-202ENST00000517403 WDR62O43379 1518 aa16.59■□□□□ 0.25
PABPC1-202ENST00000517403 PDS5BQ9NTI5 1447 aa16.57■□□□□ 0.24
PABPC1-202ENST00000517403 MRC2Q9UBG0 1479 aa16.56■□□□□ 0.24
PABPC1-202ENST00000517403 CFTRP13569 1480 aa16.53■□□□□ 0.24
PABPC1-202ENST00000517403 FANCD2Q9BXW9 1451 aa16.5■□□□□ 0.23
PABPC1-202ENST00000517403 CEP164Q9UPV0 1460 aa16.48■□□□□ 0.23
PABPC1-202ENST00000517403 URB2Q14146 1524 aaKnown RBP16.48■□□□□ 0.23
PABPC1-202ENST00000517403 PRDM2Q13029 1718 aa16.45■□□□□ 0.22
PABPC1-202ENST00000517403 CCDC88BA6NC98 1476 aa16.42■□□□□ 0.22
PABPC1-202ENST00000517403 ZNF608Q9ULD9 1512 aaPredicted RBP16.26■□□□□ 0.19
PABPC1-202ENST00000517403 TOPBP1Q92547 1522 aa16.24■□□□□ 0.19
PABPC1-202ENST00000517403 EIF4G3O43432 1585 aaKnown RBP16.17■□□□□ 0.18
PABPC1-202ENST00000517403 DNMBPQ6XZF7 1577 aa16.17■□□□□ 0.18
PABPC1-202ENST00000517403 TARBP1Q13395 1621 aaKnown RBP16.16■□□□□ 0.18
PABPC1-202ENST00000517403 IFT140Q96RY7 1462 aa16.13■□□□□ 0.17
PABPC1-202ENST00000517403 POLA1P09884 1462 aaPredicted RBP16.1■□□□□ 0.17
PABPC1-202ENST00000517403 SENP3Q9H4L4 574 aaPredicted RBP16.09■□□□□ 0.17
PABPC1-202ENST00000517403 CHD1O14646 1710 aa16.06■□□□□ 0.16
PABPC1-202ENST00000517403 CUX1P39880 1505 aa16.06■□□□□ 0.16
PABPC1-202ENST00000517403 RAD54L2Q9Y4B4 1467 aa16.06■□□□□ 0.16
PABPC1-202ENST00000517403 RIMBP3CA6NJZ7 1639 aa16.04■□□□□ 0.16
PABPC1-202ENST00000517403 RIMBP3BA6NNM3 1639 aa16.04■□□□□ 0.16
PABPC1-202ENST00000517403 RIMBP3Q9UFD9 1639 aa16.04■□□□□ 0.16
PABPC1-202ENST00000517403 AQRO60306 1485 aaKnown RBP eCLIP16.03■□□□□ 0.16
PABPC1-202ENST00000517403 TRIM41Q8WV44 630 aa16.02■□□□□ 0.16
PABPC1-202ENST00000517403 WDR97A6NE52 1622 aa16.01■□□□□ 0.15
PABPC1-202ENST00000517403 ABCC8Q09428 1581 aa16■□□□□ 0.15
PABPC1-202ENST00000517403 FGD5Q6ZNL6 1462 aa16■□□□□ 0.15
PABPC1-202ENST00000517403 OSCARQ8IYS5 282 aa15.97■□□□□ 0.15
PABPC1-202ENST00000517403 ARHGEF11O15085 1522 aa15.94■□□□□ 0.14
PABPC1-202ENST00000517403 TDRD9Q8NDG6 1382 aaKnown RBP15.92■□□□□ 0.14
PABPC1-202ENST00000517403 SOGA1O94964 1423 aa15.9■□□□□ 0.14
PABPC1-202ENST00000517403 SNAPC4Q5SXM2 1469 aa15.9■□□□□ 0.14
PABPC1-202ENST00000517403 SUPT5HO00267 1087 aaKnown RBP15.88■□□□□ 0.13
PABPC1-202ENST00000517403 PBRM1Q86U86 1689 aa15.87■□□□□ 0.13
PABPC1-202ENST00000517403 CLASP1Q7Z460 1538 aa15.86■□□□□ 0.13
PABPC1-202ENST00000517403 ABCA5Q8WWZ7 1642 aa15.86■□□□□ 0.13
PABPC1-202ENST00000517403 ARAP1Q96P48 1450 aa15.84■□□□□ 0.13
PABPC1-202ENST00000517403 SYNJ1O43426 1573 aa15.84■□□□□ 0.13
PABPC1-202ENST00000517403 BIVM-ERCC5R4GMW8 1640 aa15.8■□□□□ 0.12
PABPC1-202ENST00000517403 PLPPR3Q6T4P5 718 aa15.79■□□□□ 0.12
PABPC1-202ENST00000517403 ABCA10Q8WWZ4 1543 aa15.78■□□□□ 0.12
PABPC1-202ENST00000517403 MAGI1Q96QZ7 1491 aaPredicted RBP15.78■□□□□ 0.12
PABPC1-202ENST00000517403 GRIN2BQ13224 1484 aa15.77■□□□□ 0.11
PABPC1-202ENST00000517403 TOP2BQ02880 1626 aa15.76■□□□□ 0.11
PABPC1-202ENST00000517403 GAPVD1Q14C86 1478 aa15.74■□□□□ 0.11
PABPC1-202ENST00000517403 SYNJ2O15056 1496 aa15.73■□□□□ 0.11
PABPC1-202ENST00000517403 FBLN2P98095 1184 aa15.73■□□□□ 0.11
PABPC1-202ENST00000517403 ADAMTS12P58397 1594 aa15.72■□□□□ 0.11
PABPC1-202ENST00000517403 ERCC6L2Q5T890 1561 aa15.71■□□□□ 0.11
PABPC1-202ENST00000517403 WRNQ14191 1432 aaPredicted RBP eCLIP15.68■□□□□ 0.1
PABPC1-202ENST00000517403 CEP170Q5SW79 1584 aa15.68■□□□□ 0.1
PABPC1-202ENST00000517403 CYB5RLQ6IPT4 315 aa15.66■□□□□ 0.1
PABPC1-202ENST00000517403 GRIN2AQ12879 1464 aa15.63■□□□□ 0.09
PABPC1-202ENST00000517403 CHMP7Q8WUX9 453 aaPredicted RBP15.6■□□□□ 0.09
PABPC1-202ENST00000517403 NUP160Q12769 1436 aa15.6■□□□□ 0.09
PABPC1-202ENST00000517403 SHROOM2Q13796 1616 aa15.58■□□□□ 0.09
PABPC1-202ENST00000517403 ERICH3Q5RHP9 1530 aa15.55■□□□□ 0.08
PABPC1-202ENST00000517403 FHAD1B1AJZ9 1412 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms