RNA–Protein interactions for RNA: ENST00000515198.5

PTCD2-210, Transcript of pentatricopeptide repeat domain 2, humanhuman

TSL 5

Gene PTCD2, Length 881 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD2-210ENST00000515198 NISCHQ9Y2I1 1504 aa30.3■■■□□ 2.44
PTCD2-210ENST00000515198 CCDC180Q9P1Z9 1646 aa27■■□□□ 1.91
PTCD2-210ENST00000515198 ABCC9O60706 1549 aa26.38■■□□□ 1.81
PTCD2-210ENST00000515198 RB1CC1Q8TDY2 1594 aa25.41■■□□□ 1.66
PTCD2-210ENST00000515198 NACADO15069 1562 aa25.36■■□□□ 1.65
PTCD2-210ENST00000515198 DCAF8L2P0C7V8 631 aa25.33■■□□□ 1.65
PTCD2-210ENST00000515198 ZCCHC6Q5VYS8 1495 aaKnown RBP25.23■■□□□ 1.63
PTCD2-210ENST00000515198 MYO15BQ96JP2 1530 aa25.21■■□□□ 1.63
PTCD2-210ENST00000515198 AEBP2Q6ZN18 517 aaPredicted RBP25.2■■□□□ 1.62
PTCD2-210ENST00000515198 DCAF1Q9Y4B6 1507 aa25.07■■□□□ 1.6
PTCD2-210ENST00000515198 UNC13AQ9UPW8 1703 aa24.83■■□□□ 1.57
PTCD2-210ENST00000515198 PABPN1Q86U42 306 aaKnown RBP eCLIP24.62■■□□□ 1.53
PTCD2-210ENST00000515198 SCRIBQ14160 1630 aa24.61■■□□□ 1.53
PTCD2-210ENST00000515198 BICRAQ9NZM4 1560 aa24.59■■□□□ 1.53
PTCD2-210ENST00000515198 SHROOM4Q9ULL8 1493 aa24.38■■□□□ 1.49
PTCD2-210ENST00000515198 DNAJC5BQ9UF47 199 aa24.18■■□□□ 1.46
PTCD2-210ENST00000515198 EIF4G1Q04637 1599 aaKnown RBP23.96■■□□□ 1.43
PTCD2-210ENST00000515198 CHIC1Q5VXU3 224 aa23.96■■□□□ 1.43
PTCD2-210ENST00000515198 CC2D2AQ9P2K1 1620 aa23.88■■□□□ 1.41
PTCD2-210ENST00000515198 CECR2Q9BXF3 1484 aa23.71■■□□□ 1.39
PTCD2-210ENST00000515198 SMARCA4P51532 1647 aa23.54■■□□□ 1.36
PTCD2-210ENST00000515198 BAZ1AQ9NRL2 1556 aaPredicted RBP23.51■■□□□ 1.35
PTCD2-210ENST00000515198 SMARCA2P51531 1590 aa23.4■■□□□ 1.34
PTCD2-210ENST00000515198 ATAD2BQ9ULI0 1458 aa23.38■■□□□ 1.33
PTCD2-210ENST00000515198 NCAPD3P42695 1498 aa23.37■■□□□ 1.33
PTCD2-210ENST00000515198 MROH2BQ7Z745 1585 aa23.34■■□□□ 1.33
PTCD2-210ENST00000515198 PEG3Q9GZU2 1588 aa23.3■■□□□ 1.32
PTCD2-210ENST00000515198 HMGXB3Q12766 1538 aa23.29■■□□□ 1.32
PTCD2-210ENST00000515198 BAZ1BQ9UIG0 1483 aaKnown RBP23.22■■□□□ 1.31
PTCD2-210ENST00000515198 WIZO95785 1651 aa23.11■■□□□ 1.29
PTCD2-210ENST00000515198 RSF1Q96T23 1441 aaPredicted RBP23.06■■□□□ 1.28
PTCD2-210ENST00000515198 TOP2AP11388 1531 aaKnown RBP22.87■■□□□ 1.25
PTCD2-210ENST00000515198 NESP48681 1621 aa22.81■■□□□ 1.24
PTCD2-210ENST00000515198 LAMC3Q9Y6N6 1575 aa22.8■■□□□ 1.24
PTCD2-210ENST00000515198 ERCC6Q03468 1493 aa22.78■■□□□ 1.24
PTCD2-210ENST00000515198 CADPSQ9ULU8 1353 aa22.7■■□□□ 1.22
PTCD2-210ENST00000515198 PDS5BQ9NTI5 1447 aa22.64■■□□□ 1.21
PTCD2-210ENST00000515198 KIF21AQ7Z4S6 1674 aa22.58■■□□□ 1.21
PTCD2-210ENST00000515198 CCDC88BA6NC98 1476 aa22.58■■□□□ 1.2
PTCD2-210ENST00000515198 CFTRP13569 1480 aa22.55■■□□□ 1.2
PTCD2-210ENST00000515198 CUX2O14529 1486 aa22.54■■□□□ 1.2
PTCD2-210ENST00000515198 THOC2Q8NI27 1593 aaKnown RBP22.5■■□□□ 1.19
PTCD2-210ENST00000515198 SUPT5HO00267 1087 aaKnown RBP22.48■■□□□ 1.19
PTCD2-210ENST00000515198 PRDM2Q13029 1718 aa22.46■■□□□ 1.19
PTCD2-210ENST00000515198 FANCD2Q9BXW9 1451 aa22.45■■□□□ 1.18
PTCD2-210ENST00000515198 CEP164Q9UPV0 1460 aa22.43■■□□□ 1.18
PTCD2-210ENST00000515198 MRC2Q9UBG0 1479 aa22.4■■□□□ 1.18
PTCD2-210ENST00000515198 WDR62O43379 1518 aa22.32■■□□□ 1.16
PTCD2-210ENST00000515198 URB2Q14146 1524 aaKnown RBP22.21■■□□□ 1.15
PTCD2-210ENST00000515198 ABCC8Q09428 1581 aa22.12■■□□□ 1.13
PTCD2-210ENST00000515198 TOPBP1Q92547 1522 aa22.09■■□□□ 1.13
PTCD2-210ENST00000515198 DNMBPQ6XZF7 1577 aa22.08■■□□□ 1.12
PTCD2-210ENST00000515198 IFT140Q96RY7 1462 aa21.96■■□□□ 1.11
PTCD2-210ENST00000515198 CUX1P39880 1505 aa21.9■■□□□ 1.1
PTCD2-210ENST00000515198 POLA1P09884 1462 aaPredicted RBP21.89■■□□□ 1.09
PTCD2-210ENST00000515198 TARBP1Q13395 1621 aaKnown RBP21.84■■□□□ 1.09
PTCD2-210ENST00000515198 FGD5Q6ZNL6 1462 aa21.84■■□□□ 1.09
PTCD2-210ENST00000515198 DNAJC5Q9H3Z4 198 aa21.83■■□□□ 1.09
PTCD2-210ENST00000515198 ZNF608Q9ULD9 1512 aaPredicted RBP21.83■■□□□ 1.09
PTCD2-210ENST00000515198 SOGA1O94964 1423 aa21.81■■□□□ 1.08
PTCD2-210ENST00000515198 EIF4G3O43432 1585 aaKnown RBP21.78■■□□□ 1.08
PTCD2-210ENST00000515198 RAD54L2Q9Y4B4 1467 aa21.78■■□□□ 1.08
PTCD2-210ENST00000515198 WRNQ14191 1432 aaPredicted RBP eCLIP21.77■■□□□ 1.08
PTCD2-210ENST00000515198 BIVM-ERCC5R4GMW8 1640 aa21.74■■□□□ 1.07
PTCD2-210ENST00000515198 TOP2BQ02880 1626 aa21.73■■□□□ 1.07
PTCD2-210ENST00000515198 AQRO60306 1485 aaKnown RBP eCLIP21.71■■□□□ 1.07
PTCD2-210ENST00000515198 SYNJ1O43426 1573 aa21.71■■□□□ 1.07
PTCD2-210ENST00000515198 WDR97A6NE52 1622 aa21.71■■□□□ 1.07
PTCD2-210ENST00000515198 TDRD9Q8NDG6 1382 aaKnown RBP21.67■■□□□ 1.06
PTCD2-210ENST00000515198 ABCA10Q8WWZ4 1543 aa21.63■■□□□ 1.05
PTCD2-210ENST00000515198 OSCARQ8IYS5 282 aa21.59■■□□□ 1.05
PTCD2-210ENST00000515198 SENP3Q9H4L4 574 aaPredicted RBP21.59■■□□□ 1.05
PTCD2-210ENST00000515198 GRIN2BQ13224 1484 aa21.57■■□□□ 1.04
PTCD2-210ENST00000515198 GAPVD1Q14C86 1478 aa21.56■■□□□ 1.04
PTCD2-210ENST00000515198 ABCA5Q8WWZ7 1642 aa21.55■■□□□ 1.04
PTCD2-210ENST00000515198 PBRM1Q86U86 1689 aa21.55■■□□□ 1.04
PTCD2-210ENST00000515198 SNAPC4Q5SXM2 1469 aa21.53■■□□□ 1.04
PTCD2-210ENST00000515198 CHD1O14646 1710 aa21.53■■□□□ 1.04
PTCD2-210ENST00000515198 MAGI1Q96QZ7 1491 aaPredicted RBP21.52■■□□□ 1.04
PTCD2-210ENST00000515198 FBLN2P98095 1184 aa21.48■■□□□ 1.03
PTCD2-210ENST00000515198 CHMP7Q8WUX9 453 aaPredicted RBP21.43■■□□□ 1.02
PTCD2-210ENST00000515198 SYNJ2O15056 1496 aa21.43■■□□□ 1.02
PTCD2-210ENST00000515198 ERICH3Q5RHP9 1530 aa21.39■■□□□ 1.01
PTCD2-210ENST00000515198 ADAMTS12P58397 1594 aa21.35■■□□□ 1.01
PTCD2-210ENST00000515198 KIF27Q86VH2 1401 aa21.32■■□□□ 1
PTCD2-210ENST00000515198 FHAD1B1AJZ9 1412 aa21.31■■□□□ 1
PTCD2-210ENST00000515198 GRIN2AQ12879 1464 aa21.28■■□□□ 1
PTCD2-210ENST00000515198 PHF23Q9BUL5 403 aaPredicted RBP21.27■■□□□ 1
PTCD2-210ENST00000515198 CLASP1Q7Z460 1538 aa21.26■□□□□ 0.99
PTCD2-210ENST00000515198 RIMBP3CA6NJZ7 1639 aa21.26■□□□□ 0.99
PTCD2-210ENST00000515198 RIMBP3BA6NNM3 1639 aa21.26■□□□□ 0.99
PTCD2-210ENST00000515198 RIMBP3Q9UFD9 1639 aa21.26■□□□□ 0.99
PTCD2-210ENST00000515198 TRIM41Q8WV44 630 aa21.25■□□□□ 0.99
PTCD2-210ENST00000515198 ARHGEF11O15085 1522 aa21.23■□□□□ 0.99
PTCD2-210ENST00000515198 CUL7Q14999 1698 aa21.22■□□□□ 0.99
PTCD2-210ENST00000515198 IGF1RP08069 1367 aa21.2■□□□□ 0.98
PTCD2-210ENST00000515198 NUP160Q12769 1436 aa21.17■□□□□ 0.98
PTCD2-210ENST00000515198 CEP170Q5SW79 1584 aa21.17■□□□□ 0.98
PTCD2-210ENST00000515198 CARMIL1Q5VZK9 1371 aa21.1■□□□□ 0.97
PTCD2-210ENST00000515198 RUSC2Q8N2Y8 1516 aa21.08■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms