RNA–Protein interactions for RNA: ENST00000514508.1

COPB2-212, Transcript of coatomer protein complex subunit beta 2, humanhuman

TSL 4

Gene COPB2, Length 635 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB2-212ENST00000514508 NISCHQ9Y2I1 1504 aa30.06■■■□□ 2.4
COPB2-212ENST00000514508 CCDC180Q9P1Z9 1646 aa26.76■■□□□ 1.87
COPB2-212ENST00000514508 ABCC9O60706 1549 aa26.09■■□□□ 1.77
COPB2-212ENST00000514508 RB1CC1Q8TDY2 1594 aa25.16■■□□□ 1.62
COPB2-212ENST00000514508 NACADO15069 1562 aa25.14■■□□□ 1.61
COPB2-212ENST00000514508 DCAF8L2P0C7V8 631 aa25.09■■□□□ 1.61
COPB2-212ENST00000514508 ZCCHC6Q5VYS8 1495 aaKnown RBP25.04■■□□□ 1.6
COPB2-212ENST00000514508 MYO15BQ96JP2 1530 aa25.01■■□□□ 1.59
COPB2-212ENST00000514508 DCAF1Q9Y4B6 1507 aa24.9■■□□□ 1.58
COPB2-212ENST00000514508 UNC13AQ9UPW8 1703 aa24.6■■□□□ 1.53
COPB2-212ENST00000514508 PABPN1Q86U42 306 aaKnown RBP eCLIP24.37■■□□□ 1.49
COPB2-212ENST00000514508 BICRAQ9NZM4 1560 aa24.37■■□□□ 1.49
COPB2-212ENST00000514508 SCRIBQ14160 1630 aa24.36■■□□□ 1.49
COPB2-212ENST00000514508 SHROOM4Q9ULL8 1493 aa24.15■■□□□ 1.46
COPB2-212ENST00000514508 DNAJC5BQ9UF47 199 aa23.9■■□□□ 1.42
COPB2-212ENST00000514508 EIF4G1Q04637 1599 aaKnown RBP23.74■■□□□ 1.39
COPB2-212ENST00000514508 CC2D2AQ9P2K1 1620 aa23.63■■□□□ 1.37
COPB2-212ENST00000514508 CECR2Q9BXF3 1484 aa23.46■■□□□ 1.35
COPB2-212ENST00000514508 SMARCA4P51532 1647 aa23.33■■□□□ 1.32
COPB2-212ENST00000514508 BAZ1AQ9NRL2 1556 aaPredicted RBP23.31■■□□□ 1.32
COPB2-212ENST00000514508 SMARCA2P51531 1590 aa23.18■■□□□ 1.3
COPB2-212ENST00000514508 NCAPD3P42695 1498 aa23.18■■□□□ 1.3
COPB2-212ENST00000514508 ATAD2BQ9ULI0 1458 aa23.18■■□□□ 1.3
COPB2-212ENST00000514508 MROH2BQ7Z745 1585 aa23.15■■□□□ 1.3
COPB2-212ENST00000514508 PEG3Q9GZU2 1588 aa23.11■■□□□ 1.29
COPB2-212ENST00000514508 HMGXB3Q12766 1538 aa23.08■■□□□ 1.28
COPB2-212ENST00000514508 BAZ1BQ9UIG0 1483 aaKnown RBP23■■□□□ 1.27
COPB2-212ENST00000514508 WIZO95785 1651 aa22.92■■□□□ 1.26
COPB2-212ENST00000514508 RSF1Q96T23 1441 aaPredicted RBP22.9■■□□□ 1.26
COPB2-212ENST00000514508 TOP2AP11388 1531 aaKnown RBP22.68■■□□□ 1.22
COPB2-212ENST00000514508 LAMC3Q9Y6N6 1575 aa22.59■■□□□ 1.21
COPB2-212ENST00000514508 NESP48681 1621 aa22.58■■□□□ 1.21
COPB2-212ENST00000514508 ERCC6Q03468 1493 aa22.51■■□□□ 1.19
COPB2-212ENST00000514508 CADPSQ9ULU8 1353 aa22.5■■□□□ 1.19
COPB2-212ENST00000514508 PDS5BQ9NTI5 1447 aa22.42■■□□□ 1.18
COPB2-212ENST00000514508 CCDC88BA6NC98 1476 aa22.41■■□□□ 1.18
COPB2-212ENST00000514508 CFTRP13569 1480 aa22.37■■□□□ 1.17
COPB2-212ENST00000514508 KIF21AQ7Z4S6 1674 aa22.36■■□□□ 1.17
COPB2-212ENST00000514508 SUPT5HO00267 1087 aaKnown RBP22.33■■□□□ 1.17
COPB2-212ENST00000514508 CUX2O14529 1486 aa22.28■■□□□ 1.16
COPB2-212ENST00000514508 PRDM2Q13029 1718 aa22.26■■□□□ 1.15
COPB2-212ENST00000514508 THOC2Q8NI27 1593 aaKnown RBP22.26■■□□□ 1.15
COPB2-212ENST00000514508 FANCD2Q9BXW9 1451 aa22.23■■□□□ 1.15
COPB2-212ENST00000514508 CEP164Q9UPV0 1460 aa22.22■■□□□ 1.15
COPB2-212ENST00000514508 MRC2Q9UBG0 1479 aa22.17■■□□□ 1.14
COPB2-212ENST00000514508 WDR62O43379 1518 aa22.11■■□□□ 1.13
COPB2-212ENST00000514508 URB2Q14146 1524 aaKnown RBP22■■□□□ 1.11
COPB2-212ENST00000514508 ABCC8Q09428 1581 aa21.93■■□□□ 1.1
COPB2-212ENST00000514508 TOPBP1Q92547 1522 aa21.89■■□□□ 1.09
COPB2-212ENST00000514508 DNMBPQ6XZF7 1577 aa21.88■■□□□ 1.09
COPB2-212ENST00000514508 IFT140Q96RY7 1462 aa21.75■■□□□ 1.07
COPB2-212ENST00000514508 CUX1P39880 1505 aa21.72■■□□□ 1.07
COPB2-212ENST00000514508 POLA1P09884 1462 aaPredicted RBP21.7■■□□□ 1.06
COPB2-212ENST00000514508 FGD5Q6ZNL6 1462 aa21.65■■□□□ 1.06
COPB2-212ENST00000514508 TARBP1Q13395 1621 aaKnown RBP21.65■■□□□ 1.06
COPB2-212ENST00000514508 ZNF608Q9ULD9 1512 aaPredicted RBP21.62■■□□□ 1.05
COPB2-212ENST00000514508 SOGA1O94964 1423 aa21.62■■□□□ 1.05
COPB2-212ENST00000514508 WRNQ14191 1432 aaPredicted RBP eCLIP21.6■■□□□ 1.05
COPB2-212ENST00000514508 RAD54L2Q9Y4B4 1467 aa21.59■■□□□ 1.05
COPB2-212ENST00000514508 BIVM-ERCC5R4GMW8 1640 aa21.57■■□□□ 1.04
COPB2-212ENST00000514508 EIF4G3O43432 1585 aaKnown RBP21.57■■□□□ 1.04
COPB2-212ENST00000514508 TOP2BQ02880 1626 aa21.56■■□□□ 1.04
COPB2-212ENST00000514508 DNAJC5Q9H3Z4 198 aa21.55■■□□□ 1.04
COPB2-212ENST00000514508 SYNJ1O43426 1573 aa21.53■■□□□ 1.04
COPB2-212ENST00000514508 WDR97A6NE52 1622 aa21.52■■□□□ 1.04
COPB2-212ENST00000514508 AQRO60306 1485 aaKnown RBP eCLIP21.51■■□□□ 1.036e-7■■□□□ 11.9
COPB2-212ENST00000514508 TDRD9Q8NDG6 1382 aaKnown RBP21.48■■□□□ 1.03
COPB2-212ENST00000514508 ABCA10Q8WWZ4 1543 aa21.45■■□□□ 1.02
COPB2-212ENST00000514508 GRIN2BQ13224 1484 aa21.37■■□□□ 1.01
COPB2-212ENST00000514508 GAPVD1Q14C86 1478 aa21.37■■□□□ 1.01
COPB2-212ENST00000514508 ABCA5Q8WWZ7 1642 aa21.37■■□□□ 1.01
COPB2-212ENST00000514508 OSCARQ8IYS5 282 aa21.36■■□□□ 1.01
COPB2-212ENST00000514508 PBRM1Q86U86 1689 aa21.34■■□□□ 1.01
COPB2-212ENST00000514508 SNAPC4Q5SXM2 1469 aa21.32■■□□□ 1
COPB2-212ENST00000514508 MAGI1Q96QZ7 1491 aaPredicted RBP21.32■■□□□ 1
COPB2-212ENST00000514508 CHD1O14646 1710 aa21.3■■□□□ 1
COPB2-212ENST00000514508 FBLN2P98095 1184 aa21.26■□□□□ 0.99
COPB2-212ENST00000514508 SYNJ2O15056 1496 aa21.22■□□□□ 0.99
COPB2-212ENST00000514508 CHMP7Q8WUX9 453 aaPredicted RBP21.22■□□□□ 0.99
COPB2-212ENST00000514508 ERICH3Q5RHP9 1530 aa21.2■□□□□ 0.98
COPB2-212ENST00000514508 KIF27Q86VH2 1401 aa21.16■□□□□ 0.98
COPB2-212ENST00000514508 ADAMTS12P58397 1594 aa21.15■□□□□ 0.98
COPB2-212ENST00000514508 FHAD1B1AJZ9 1412 aa21.12■□□□□ 0.97
COPB2-212ENST00000514508 TRIM41Q8WV44 630 aa21.12■□□□□ 0.97
COPB2-212ENST00000514508 GRIN2AQ12879 1464 aa21.09■□□□□ 0.97
COPB2-212ENST00000514508 AEBP2Q6ZN18 517 aaPredicted RBP21.06■□□□□ 0.96
COPB2-212ENST00000514508 CLASP1Q7Z460 1538 aa21.05■□□□□ 0.96
COPB2-212ENST00000514508 IGF1RP08069 1367 aa21.05■□□□□ 0.96
COPB2-212ENST00000514508 CUL7Q14999 1698 aa21.03■□□□□ 0.96
COPB2-212ENST00000514508 RIMBP3CA6NJZ7 1639 aa21■□□□□ 0.95
COPB2-212ENST00000514508 RIMBP3BA6NNM3 1639 aa21■□□□□ 0.95
COPB2-212ENST00000514508 RIMBP3Q9UFD9 1639 aa21■□□□□ 0.95
COPB2-212ENST00000514508 ARHGEF11O15085 1522 aa20.99■□□□□ 0.95
COPB2-212ENST00000514508 NUP160Q12769 1436 aa20.99■□□□□ 0.95
COPB2-212ENST00000514508 CEP170Q5SW79 1584 aa20.97■□□□□ 0.95
COPB2-212ENST00000514508 RUSC2Q8N2Y8 1516 aa20.94■□□□□ 0.94
COPB2-212ENST00000514508 CARMIL1Q5VZK9 1371 aa20.94■□□□□ 0.94
COPB2-212ENST00000514508 CHIC1Q5VXU3 224 aa20.85■□□□□ 0.93
COPB2-212ENST00000514508 SHROOM2Q13796 1616 aa20.85■□□□□ 0.93
COPB2-212ENST00000514508 RAPGEF2Q9Y4G8 1499 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 142.7 ms