RNA–Protein interactions for RNA: ENST00000514013.1

SH3D19-209, Transcript of SH3 domain containing 19, humanhuman

TSL 4

Gene SH3D19, Length 557 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3D19-209ENST00000514013 AEBP2Q6ZN18 517 aaPredicted RBP29.02■■■□□ 2.24
SH3D19-209ENST00000514013 CHIC1Q5VXU3 224 aa27.23■■□□□ 1.95
SH3D19-209ENST00000514013 SENP3Q9H4L4 574 aaPredicted RBP24.85■■□□□ 1.57
SH3D19-209ENST00000514013 PHF23Q9BUL5 403 aaPredicted RBP24.46■■□□□ 1.51
SH3D19-209ENST00000514013 NISCHQ9Y2I1 1504 aa23.5■■□□□ 1.35
SH3D19-209ENST00000514013 FOXD1Q16676 465 aa23.18■■□□□ 1.3
SH3D19-209ENST00000514013 POTEDQ86YR6 584 aa21.92■■□□□ 1.1
SH3D19-209ENST00000514013 MSH5O43196 834 aa21.86■■□□□ 1.09
SH3D19-209ENST00000514013 ABCC9O60706 1549 aa21.79■■□□□ 1.08
SH3D19-209ENST00000514013 PLPPR3Q6T4P5 718 aa21.61■■□□□ 1.05
SH3D19-209ENST00000514013 PIAS4Q8N2W9 510 aaPredicted RBP21.6■■□□□ 1.05
SH3D19-209ENST00000514013 PPP6R1Q9UPN7 881 aa21.39■■□□□ 1.01
SH3D19-209ENST00000514013 ADRA2BP18089 450 aa21.32■■□□□ 1
SH3D19-209ENST00000514013 CCDC180Q9P1Z9 1646 aa21.2■□□□□ 0.98
SH3D19-209ENST00000514013 DNAJC5BQ9UF47 199 aa20.94■□□□□ 0.94
SH3D19-209ENST00000514013 RB1CC1Q8TDY2 1594 aa20.42■□□□□ 0.86
SH3D19-209ENST00000514013 PABPN1Q86U42 306 aaKnown RBP eCLIP20.23■□□□□ 0.83
SH3D19-209ENST00000514013 NACADO15069 1562 aa20.17■□□□□ 0.82
SH3D19-209ENST00000514013 DCAF8L2P0C7V8 631 aa20.01■□□□□ 0.79
SH3D19-209ENST00000514013 BICRAQ9NZM4 1560 aa19.96■□□□□ 0.79
SH3D19-209ENST00000514013 UNC13AQ9UPW8 1703 aa19.96■□□□□ 0.79
SH3D19-209ENST00000514013 MYO15BQ96JP2 1530 aa19.75■□□□□ 0.75
SH3D19-209ENST00000514013 MAPK8IP2Q13387 824 aaPredicted RBP19.68■□□□□ 0.74
SH3D19-209ENST00000514013 CECR2Q9BXF3 1484 aa19.65■□□□□ 0.74
SH3D19-209ENST00000514013 DMRT2Q9Y5R5 561 aa19.64■□□□□ 0.73
SH3D19-209ENST00000514013 CC2D2AQ9P2K1 1620 aa19.61■□□□□ 0.73
SH3D19-209ENST00000514013 SCAF1Q9H7N4 1312 aaKnown RBP19.53■□□□□ 0.72
SH3D19-209ENST00000514013 SHROOM4Q9ULL8 1493 aa19.52■□□□□ 0.72
SH3D19-209ENST00000514013 DNAJC5Q9H3Z4 198 aa19.47■□□□□ 0.71
SH3D19-209ENST00000514013 EIF4G1Q04637 1599 aaKnown RBP19.46■□□□□ 0.71
SH3D19-209ENST00000514013 ZCCHC6Q5VYS8 1495 aaKnown RBP19.39■□□□□ 0.69
SH3D19-209ENST00000514013 SCRIBQ14160 1630 aa19.37■□□□□ 0.69
SH3D19-209ENST00000514013 DCAF1Q9Y4B6 1507 aa19.34■□□□□ 0.69
SH3D19-209ENST00000514013 CACNB1Q02641 598 aaPredicted RBP18.98■□□□□ 0.63
SH3D19-209ENST00000514013 DCAF8L1A6NGE4 600 aa18.89■□□□□ 0.61
SH3D19-209ENST00000514013 PPP4R3CPQ6ZMV5 832 aa18.89■□□□□ 0.61
SH3D19-209ENST00000514013 CUX2O14529 1486 aa18.89■□□□□ 0.61
SH3D19-209ENST00000514013 ERCC6Q03468 1493 aa18.77■□□□□ 0.59
SH3D19-209ENST00000514013 HOXD11P31277 338 aaPredicted RBP18.76■□□□□ 0.59
SH3D19-209ENST00000514013 NCAPD3P42695 1498 aa18.69■□□□□ 0.58
SH3D19-209ENST00000514013 CNKSR2Q8WXI2 1034 aa18.62■□□□□ 0.57
SH3D19-209ENST00000514013 NESP48681 1621 aa18.61■□□□□ 0.57
SH3D19-209ENST00000514013 RNF39Q9H2S5 420 aa18.6■□□□□ 0.57
SH3D19-209ENST00000514013 ATAD2BQ9ULI0 1458 aa18.58■□□□□ 0.57
SH3D19-209ENST00000514013 RNF216Q9NWF9 866 aaPredicted RBP18.54■□□□□ 0.56
SH3D19-209ENST00000514013 HMGXB3Q12766 1538 aa18.48■□□□□ 0.55
SH3D19-209ENST00000514013 THOC2Q8NI27 1593 aaKnown RBP18.47■□□□□ 0.55
SH3D19-209ENST00000514013 SMARCA2P51531 1590 aa18.43■□□□□ 0.54
SH3D19-209ENST00000514013 TRIM41Q8WV44 630 aa18.42■□□□□ 0.54
SH3D19-209ENST00000514013 SMARCA4P51532 1647 aa18.41■□□□□ 0.54
SH3D19-209ENST00000514013 BAZ1BQ9UIG0 1483 aaKnown RBP18.34■□□□□ 0.53
SH3D19-209ENST00000514013 C1QBPQ07021 282 aaKnown RBP18.32■□□□□ 0.52
SH3D19-209ENST00000514013 LAMC3Q9Y6N6 1575 aa18.28■□□□□ 0.52
SH3D19-209ENST00000514013 KIF21AQ7Z4S6 1674 aa18.25■□□□□ 0.51
SH3D19-209ENST00000514013 PEG3Q9GZU2 1588 aa18.23■□□□□ 0.51
SH3D19-209ENST00000514013 BAZ1AQ9NRL2 1556 aaPredicted RBP18.22■□□□□ 0.51
SH3D19-209ENST00000514013 PDS5BQ9NTI5 1447 aa18.2■□□□□ 0.5
SH3D19-209ENST00000514013 MROH2BQ7Z745 1585 aa18.15■□□□□ 0.5
SH3D19-209ENST00000514013 MRC2Q9UBG0 1479 aa18.12■□□□□ 0.49
SH3D19-209ENST00000514013 WDR62O43379 1518 aa18.1■□□□□ 0.49
SH3D19-209ENST00000514013 CADPSQ9ULU8 1353 aa18.1■□□□□ 0.49
SH3D19-209ENST00000514013 NCBP3Q53F19 620 aaKnown RBP18.08■□□□□ 0.48
SH3D19-209ENST00000514013 OSCARQ8IYS5 282 aa17.94■□□□□ 0.46
SH3D19-209ENST00000514013 CEP164Q9UPV0 1460 aa17.93■□□□□ 0.46
SH3D19-209ENST00000514013 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.92■□□□□ 0.465e-9■■□□□ 11.9
SH3D19-209ENST00000514013 FANCD2Q9BXW9 1451 aa17.89■□□□□ 0.45
SH3D19-209ENST00000514013 WIZO95785 1651 aa17.86■□□□□ 0.45
SH3D19-209ENST00000514013 URB2Q14146 1524 aaKnown RBP17.82■□□□□ 0.44
SH3D19-209ENST00000514013 CFTRP13569 1480 aa17.8■□□□□ 0.44
SH3D19-209ENST00000514013 RIMBP3CA6NJZ7 1639 aa17.8■□□□□ 0.44
SH3D19-209ENST00000514013 RIMBP3BA6NNM3 1639 aa17.8■□□□□ 0.44
SH3D19-209ENST00000514013 RIMBP3Q9UFD9 1639 aa17.8■□□□□ 0.44
SH3D19-209ENST00000514013 NPM3O75607 178 aaKnown RBP17.79■□□□□ 0.44
SH3D19-209ENST00000514013 ARHGEF11O15085 1522 aa17.72■□□□□ 0.43
SH3D19-209ENST00000514013 ZNF608Q9ULD9 1512 aaPredicted RBP17.7■□□□□ 0.42
SH3D19-209ENST00000514013 CYB5RLQ6IPT4 315 aa17.6■□□□□ 0.41
SH3D19-209ENST00000514013 TOP2AP11388 1531 aaKnown RBP17.59■□□□□ 0.41
SH3D19-209ENST00000514013 IFT140Q96RY7 1462 aa17.59■□□□□ 0.41
SH3D19-209ENST00000514013 RSF1Q96T23 1441 aaPredicted RBP17.59■□□□□ 0.41
SH3D19-209ENST00000514013 ARAP1Q96P48 1450 aa17.55■□□□□ 0.4
SH3D19-209ENST00000514013 TOPBP1Q92547 1522 aa17.52■□□□□ 0.39
SH3D19-209ENST00000514013 EIF4G3O43432 1585 aaKnown RBP17.51■□□□□ 0.39
SH3D19-209ENST00000514013 TRHP20396 242 aaPredicted RBP17.51■□□□□ 0.39
SH3D19-209ENST00000514013 U3KPZ7 1027 aaPredicted RBP17.47■□□□□ 0.39
SH3D19-209ENST00000514013 AQRO60306 1485 aaKnown RBP eCLIP17.45■□□□□ 0.381e-7■■■■■ 30.5
SH3D19-209ENST00000514013 PRDM2Q13029 1718 aa17.44■□□□□ 0.38
SH3D19-209ENST00000514013 CCDC88BA6NC98 1476 aa17.43■□□□□ 0.38
SH3D19-209ENST00000514013 CHD1O14646 1710 aa17.42■□□□□ 0.38
SH3D19-209ENST00000514013 TARBP1Q13395 1621 aaKnown RBP17.39■□□□□ 0.37
SH3D19-209ENST00000514013 DNMBPQ6XZF7 1577 aa17.37■□□□□ 0.37
SH3D19-209ENST00000514013 FBLN2P98095 1184 aa17.37■□□□□ 0.37
SH3D19-209ENST00000514013 CAPN15O75808 1086 aa17.34■□□□□ 0.37
SH3D19-209ENST00000514013 ABCC8Q09428 1581 aa17.33■□□□□ 0.37
SH3D19-209ENST00000514013 SPINK5Q9NQ38 1064 aaPredicted RBP17.33■□□□□ 0.36
SH3D19-209ENST00000514013 POLA1P09884 1462 aaPredicted RBP17.31■□□□□ 0.36
SH3D19-209ENST00000514013 DSG3P32926 999 aa17.3■□□□□ 0.36
SH3D19-209ENST00000514013 RAD54L2Q9Y4B4 1467 aa17.29■□□□□ 0.36
SH3D19-209ENST00000514013 CLASP1Q7Z460 1538 aa17.28■□□□□ 0.36
SH3D19-209ENST00000514013 TDRD9Q8NDG6 1382 aaKnown RBP17.28■□□□□ 0.36
SH3D19-209ENST00000514013 SNAPC4Q5SXM2 1469 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms