RNA–Protein interactions for RNA: ENST00000513989.5

NEDD9-214, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 4

Gene NEDD9, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-214ENST00000513989 NISCHQ9Y2I1 1504 aa24.07■■□□□ 1.44
NEDD9-214ENST00000513989 CCDC180Q9P1Z9 1646 aa21.66■■□□□ 1.06
NEDD9-214ENST00000513989 ABCC9O60706 1549 aa21.57■■□□□ 1.04
NEDD9-214ENST00000513989 RB1CC1Q8TDY2 1594 aa20.54■□□□□ 0.88
NEDD9-214ENST00000513989 NACADO15069 1562 aa20.4■□□□□ 0.86
NEDD9-214ENST00000513989 UNC13AQ9UPW8 1703 aa20.28■□□□□ 0.84
NEDD9-214ENST00000513989 DNAJC5BQ9UF47 199 aa20.27■□□□□ 0.84
NEDD9-214ENST00000513989 MYO15BQ96JP2 1530 aa20.14■□□□□ 0.81
NEDD9-214ENST00000513989 DCAF8L2P0C7V8 631 aa20.13■□□□□ 0.81
NEDD9-214ENST00000513989 BICRAQ9NZM4 1560 aa20.04■□□□□ 0.8
NEDD9-214ENST00000513989 PABPN1Q86U42 306 aaKnown RBP eCLIP20.03■□□□□ 0.8
NEDD9-214ENST00000513989 ZCCHC6Q5VYS8 1495 aaKnown RBP19.97■□□□□ 0.79
NEDD9-214ENST00000513989 DCAF1Q9Y4B6 1507 aa19.88■□□□□ 0.77
NEDD9-214ENST00000513989 SCRIBQ14160 1630 aa19.7■□□□□ 0.74
NEDD9-214ENST00000513989 SHROOM4Q9ULL8 1493 aa19.67■□□□□ 0.74
NEDD9-214ENST00000513989 CC2D2AQ9P2K1 1620 aa19.54■□□□□ 0.72
NEDD9-214ENST00000513989 EIF4G1Q04637 1599 aaKnown RBP19.49■□□□□ 0.71
NEDD9-214ENST00000513989 CECR2Q9BXF3 1484 aa19.41■□□□□ 0.7
NEDD9-214ENST00000513989 NCAPD3P42695 1498 aa18.82■□□□□ 0.6
NEDD9-214ENST00000513989 SMARCA4P51532 1647 aa18.82■□□□□ 0.6
NEDD9-214ENST00000513989 ATAD2BQ9ULI0 1458 aa18.78■□□□□ 0.6
NEDD9-214ENST00000513989 HMGXB3Q12766 1538 aa18.72■□□□□ 0.59
NEDD9-214ENST00000513989 SMARCA2P51531 1590 aa18.71■□□□□ 0.59
NEDD9-214ENST00000513989 AEBP2Q6ZN18 517 aaPredicted RBP18.67■□□□□ 0.58
NEDD9-214ENST00000513989 BAZ1AQ9NRL2 1556 aaPredicted RBP18.66■□□□□ 0.58
NEDD9-214ENST00000513989 PEG3Q9GZU2 1588 aa18.64■□□□□ 0.58
NEDD9-214ENST00000513989 NESP48681 1621 aa18.58■□□□□ 0.56
NEDD9-214ENST00000513989 CUX2O14529 1486 aa18.58■□□□□ 0.56
NEDD9-214ENST00000513989 MROH2BQ7Z745 1585 aa18.57■□□□□ 0.56
NEDD9-214ENST00000513989 BAZ1BQ9UIG0 1483 aaKnown RBP18.57■□□□□ 0.56
NEDD9-214ENST00000513989 ERCC6Q03468 1493 aa18.56■□□□□ 0.56
NEDD9-214ENST00000513989 DNAJC5Q9H3Z4 198 aa18.53■□□□□ 0.56
NEDD9-214ENST00000513989 THOC2Q8NI27 1593 aaKnown RBP18.45■□□□□ 0.54
NEDD9-214ENST00000513989 LAMC3Q9Y6N6 1575 aa18.42■□□□□ 0.54
NEDD9-214ENST00000513989 KIF21AQ7Z4S6 1674 aa18.41■□□□□ 0.54
NEDD9-214ENST00000513989 WIZO95785 1651 aa18.38■□□□□ 0.53
NEDD9-214ENST00000513989 PDS5BQ9NTI5 1447 aa18.23■□□□□ 0.51
NEDD9-214ENST00000513989 CADPSQ9ULU8 1353 aa18.21■□□□□ 0.51
NEDD9-214ENST00000513989 WDR62O43379 1518 aa18.14■□□□□ 0.49
NEDD9-214ENST00000513989 RSF1Q96T23 1441 aaPredicted RBP18.14■□□□□ 0.49
NEDD9-214ENST00000513989 MRC2Q9UBG0 1479 aa18.13■□□□□ 0.49
NEDD9-214ENST00000513989 TOP2AP11388 1531 aaKnown RBP18.09■□□□□ 0.49
NEDD9-214ENST00000513989 SUPT5HO00267 1087 aaKnown RBP18.09■□□□□ 0.49
NEDD9-214ENST00000513989 CFTRP13569 1480 aa18.05■□□□□ 0.48
NEDD9-214ENST00000513989 CEP164Q9UPV0 1460 aa18.04■□□□□ 0.48
NEDD9-214ENST00000513989 FANCD2Q9BXW9 1451 aa18.03■□□□□ 0.48
NEDD9-214ENST00000513989 PRDM2Q13029 1718 aa18.03■□□□□ 0.48
NEDD9-214ENST00000513989 CHIC1Q5VXU3 224 aa17.99■□□□□ 0.47
NEDD9-214ENST00000513989 URB2Q14146 1524 aaKnown RBP17.94■□□□□ 0.46
NEDD9-214ENST00000513989 CCDC88BA6NC98 1476 aa17.88■□□□□ 0.45
NEDD9-214ENST00000513989 TOPBP1Q92547 1522 aa17.72■□□□□ 0.43
NEDD9-214ENST00000513989 ZNF608Q9ULD9 1512 aaPredicted RBP17.72■□□□□ 0.43
NEDD9-214ENST00000513989 IFT140Q96RY7 1462 aa17.68■□□□□ 0.42
NEDD9-214ENST00000513989 DNMBPQ6XZF7 1577 aa17.66■□□□□ 0.42
NEDD9-214ENST00000513989 TRIM41Q8WV44 630 aa17.66■□□□□ 0.42
NEDD9-214ENST00000513989 EIF4G3O43432 1585 aaKnown RBP17.65■□□□□ 0.42
NEDD9-214ENST00000513989 TARBP1Q13395 1621 aaKnown RBP17.63■□□□□ 0.41
NEDD9-214ENST00000513989 OSCARQ8IYS5 282 aa17.63■□□□□ 0.41
NEDD9-214ENST00000513989 ABCC8Q09428 1581 aa17.61■□□□□ 0.41
NEDD9-214ENST00000513989 RIMBP3CA6NJZ7 1639 aa17.58■□□□□ 0.4
NEDD9-214ENST00000513989 RIMBP3BA6NNM3 1639 aa17.58■□□□□ 0.4
NEDD9-214ENST00000513989 RIMBP3Q9UFD9 1639 aa17.58■□□□□ 0.4
NEDD9-214ENST00000513989 CHD1O14646 1710 aa17.56■□□□□ 0.4
NEDD9-214ENST00000513989 POLA1P09884 1462 aaPredicted RBP17.54■□□□□ 0.4
NEDD9-214ENST00000513989 AQRO60306 1485 aaKnown RBP eCLIP17.51■□□□□ 0.393e-8■■■□□ 16.2
NEDD9-214ENST00000513989 ARHGEF11O15085 1522 aa17.48■□□□□ 0.39
NEDD9-214ENST00000513989 RAD54L2Q9Y4B4 1467 aa17.47■□□□□ 0.39
NEDD9-214ENST00000513989 CUX1P39880 1505 aa17.44■□□□□ 0.38
NEDD9-214ENST00000513989 FGD5Q6ZNL6 1462 aa17.43■□□□□ 0.38
NEDD9-214ENST00000513989 WDR97A6NE52 1622 aa17.43■□□□□ 0.38
NEDD9-214ENST00000513989 SOGA1O94964 1423 aa17.39■□□□□ 0.38
NEDD9-214ENST00000513989 TDRD9Q8NDG6 1382 aaKnown RBP17.38■□□□□ 0.37
NEDD9-214ENST00000513989 SNAPC4Q5SXM2 1469 aa17.34■□□□□ 0.37
NEDD9-214ENST00000513989 PBRM1Q86U86 1689 aa17.33■□□□□ 0.37
NEDD9-214ENST00000513989 CLASP1Q7Z460 1538 aa17.31■□□□□ 0.36
NEDD9-214ENST00000513989 ARAP1Q96P48 1450 aa17.31■□□□□ 0.36
NEDD9-214ENST00000513989 MAGI1Q96QZ7 1491 aaPredicted RBP17.28■□□□□ 0.36
NEDD9-214ENST00000513989 ABCA5Q8WWZ7 1642 aa17.28■□□□□ 0.36
NEDD9-214ENST00000513989 FBLN2P98095 1184 aa17.27■□□□□ 0.36
NEDD9-214ENST00000513989 GRIN2BQ13224 1484 aa17.26■□□□□ 0.35
NEDD9-214ENST00000513989 CYB5RLQ6IPT4 315 aa17.24■□□□□ 0.35
NEDD9-214ENST00000513989 ABCA10Q8WWZ4 1543 aa17.23■□□□□ 0.35
NEDD9-214ENST00000513989 SYNJ1O43426 1573 aa17.23■□□□□ 0.35
NEDD9-214ENST00000513989 SYNJ2O15056 1496 aa17.22■□□□□ 0.35
NEDD9-214ENST00000513989 BIVM-ERCC5R4GMW8 1640 aa17.21■□□□□ 0.35
NEDD9-214ENST00000513989 GAPVD1Q14C86 1478 aa17.2■□□□□ 0.34
NEDD9-214ENST00000513989 TOP2BQ02880 1626 aa17.17■□□□□ 0.34
NEDD9-214ENST00000513989 CHMP7Q8WUX9 453 aaPredicted RBP17.15■□□□□ 0.34
NEDD9-214ENST00000513989 ADAMTS12P58397 1594 aa17.11■□□□□ 0.33
NEDD9-214ENST00000513989 WRNQ14191 1432 aaPredicted RBP eCLIP17.11■□□□□ 0.33
NEDD9-214ENST00000513989 CEP170Q5SW79 1584 aa17.07■□□□□ 0.32
NEDD9-214ENST00000513989 ERCC6L2Q5T890 1561 aa17.07■□□□□ 0.32
NEDD9-214ENST00000513989 GRIN2AQ12879 1464 aa17.07■□□□□ 0.32
NEDD9-214ENST00000513989 NUP160Q12769 1436 aa17.03■□□□□ 0.32
NEDD9-214ENST00000513989 SHROOM2Q13796 1616 aa17.03■□□□□ 0.32
NEDD9-214ENST00000513989 ERICH3Q5RHP9 1530 aa17.01■□□□□ 0.31
NEDD9-214ENST00000513989 TRHP20396 242 aaPredicted RBP16.99■□□□□ 0.31
NEDD9-214ENST00000513989 FHAD1B1AJZ9 1412 aa16.97■□□□□ 0.31
NEDD9-214ENST00000513989 RUSC2Q8N2Y8 1516 aa16.89■□□□□ 0.29
NEDD9-214ENST00000513989 KIF13AQ9H1H9 1805 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 121.5 ms