RNA–Protein interactions for RNA: ENST00000513452.5

CLDND1-227, Transcript of claudin domain containing 1, humanhuman

TSL 3

Gene CLDND1, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-227ENST00000513452 NISCHQ9Y2I1 1504 aa27.02■■□□□ 1.92
CLDND1-227ENST00000513452 ABCC9O60706 1549 aa24.96■■□□□ 1.59
CLDND1-227ENST00000513452 CCDC180Q9P1Z9 1646 aa24.46■■□□□ 1.51
CLDND1-227ENST00000513452 DNAJC5BQ9UF47 199 aa23.79■■□□□ 1.4
CLDND1-227ENST00000513452 RB1CC1Q8TDY2 1594 aa23.52■■□□□ 1.36
CLDND1-227ENST00000513452 NACADO15069 1562 aa23.23■■□□□ 1.31
CLDND1-227ENST00000513452 PABPN1Q86U42 306 aaKnown RBP eCLIP23.14■■□□□ 1.29
CLDND1-227ENST00000513452 DCAF8L2P0C7V8 631 aa23.02■■□□□ 1.28
CLDND1-227ENST00000513452 UNC13AQ9UPW8 1703 aa22.97■■□□□ 1.27
CLDND1-227ENST00000513452 BICRAQ9NZM4 1560 aa22.85■■□□□ 1.25
CLDND1-227ENST00000513452 MYO15BQ96JP2 1530 aa22.72■■□□□ 1.23
CLDND1-227ENST00000513452 CECR2Q9BXF3 1484 aa22.53■■□□□ 1.2
CLDND1-227ENST00000513452 CC2D2AQ9P2K1 1620 aa22.5■■□□□ 1.19
CLDND1-227ENST00000513452 SHROOM4Q9ULL8 1493 aa22.48■■□□□ 1.19
CLDND1-227ENST00000513452 EIF4G1Q04637 1599 aaKnown RBP22.33■■□□□ 1.17
CLDND1-227ENST00000513452 ZCCHC6Q5VYS8 1495 aaKnown RBP22.31■■□□□ 1.16
CLDND1-227ENST00000513452 SCRIBQ14160 1630 aa22.31■■□□□ 1.16
CLDND1-227ENST00000513452 DCAF1Q9Y4B6 1507 aa22.26■■□□□ 1.15
CLDND1-227ENST00000513452 DNAJC5Q9H3Z4 198 aa22.18■■□□□ 1.14
CLDND1-227ENST00000513452 CUX2O14529 1486 aa21.68■■□□□ 1.06
CLDND1-227ENST00000513452 ERCC6Q03468 1493 aa21.59■■□□□ 1.05
CLDND1-227ENST00000513452 NCAPD3P42695 1498 aa21.44■■□□□ 1.02
CLDND1-227ENST00000513452 ATAD2BQ9ULI0 1458 aa21.32■■□□□ 1
CLDND1-227ENST00000513452 NESP48681 1621 aa21.3■■□□□ 1
CLDND1-227ENST00000513452 HMGXB3Q12766 1538 aa21.26■□□□□ 0.99
CLDND1-227ENST00000513452 SMARCA2P51531 1590 aa21.25■□□□□ 0.99
CLDND1-227ENST00000513452 SMARCA4P51532 1647 aa21.2■□□□□ 0.98
CLDND1-227ENST00000513452 THOC2Q8NI27 1593 aaKnown RBP21.19■□□□□ 0.98
CLDND1-227ENST00000513452 BAZ1BQ9UIG0 1483 aaKnown RBP21.12■□□□□ 0.97
CLDND1-227ENST00000513452 TRIM41Q8WV44 630 aa21.07■□□□□ 0.96
CLDND1-227ENST00000513452 LAMC3Q9Y6N6 1575 aa21.05■□□□□ 0.96
CLDND1-227ENST00000513452 KIF21AQ7Z4S6 1674 aa21.01■□□□□ 0.95
CLDND1-227ENST00000513452 BAZ1AQ9NRL2 1556 aaPredicted RBP21.01■□□□□ 0.95
CLDND1-227ENST00000513452 PEG3Q9GZU2 1588 aa20.97■□□□□ 0.95
CLDND1-227ENST00000513452 PDS5BQ9NTI5 1447 aa20.94■□□□□ 0.94
CLDND1-227ENST00000513452 MROH2BQ7Z745 1585 aa20.83■□□□□ 0.92
CLDND1-227ENST00000513452 MRC2Q9UBG0 1479 aa20.81■□□□□ 0.92
CLDND1-227ENST00000513452 WDR62O43379 1518 aa20.78■□□□□ 0.92
CLDND1-227ENST00000513452 CADPSQ9ULU8 1353 aa20.76■□□□□ 0.91
CLDND1-227ENST00000513452 CEP164Q9UPV0 1460 aa20.64■□□□□ 0.89
CLDND1-227ENST00000513452 OSCARQ8IYS5 282 aa20.57■□□□□ 0.88
CLDND1-227ENST00000513452 FANCD2Q9BXW9 1451 aa20.56■□□□□ 0.88
CLDND1-227ENST00000513452 WIZO95785 1651 aa20.56■□□□□ 0.88
CLDND1-227ENST00000513452 CFTRP13569 1480 aa20.44■□□□□ 0.86
CLDND1-227ENST00000513452 URB2Q14146 1524 aaKnown RBP20.43■□□□□ 0.86
CLDND1-227ENST00000513452 RIMBP3CA6NJZ7 1639 aa20.42■□□□□ 0.86
CLDND1-227ENST00000513452 RIMBP3BA6NNM3 1639 aa20.42■□□□□ 0.86
CLDND1-227ENST00000513452 RIMBP3Q9UFD9 1639 aa20.42■□□□□ 0.86
CLDND1-227ENST00000513452 ARHGEF11O15085 1522 aa20.31■□□□□ 0.84
CLDND1-227ENST00000513452 TOP2AP11388 1531 aaKnown RBP20.27■□□□□ 0.84
CLDND1-227ENST00000513452 ZNF608Q9ULD9 1512 aaPredicted RBP20.27■□□□□ 0.83
CLDND1-227ENST00000513452 IFT140Q96RY7 1462 aa20.23■□□□□ 0.83
CLDND1-227ENST00000513452 RSF1Q96T23 1441 aaPredicted RBP20.2■□□□□ 0.82
CLDND1-227ENST00000513452 PRDM2Q13029 1718 aa20.19■□□□□ 0.82
CLDND1-227ENST00000513452 CYB5RLQ6IPT4 315 aa20.16■□□□□ 0.82
CLDND1-227ENST00000513452 AEBP2Q6ZN18 517 aaPredicted RBP20.15■□□□□ 0.82
CLDND1-227ENST00000513452 EIF4G3O43432 1585 aaKnown RBP20.14■□□□□ 0.81
CLDND1-227ENST00000513452 TOPBP1Q92547 1522 aa20.12■□□□□ 0.81
CLDND1-227ENST00000513452 TRHP20396 242 aaPredicted RBP20.1■□□□□ 0.81
CLDND1-227ENST00000513452 ARAP1Q96P48 1450 aa20.08■□□□□ 0.81
CLDND1-227ENST00000513452 CHD1O14646 1710 aa20.06■□□□□ 0.8
CLDND1-227ENST00000513452 CCDC88BA6NC98 1476 aa20.03■□□□□ 0.8
CLDND1-227ENST00000513452 ABCC8Q09428 1581 aa20■□□□□ 0.79
CLDND1-227ENST00000513452 DNMBPQ6XZF7 1577 aa20■□□□□ 0.79
CLDND1-227ENST00000513452 AQRO60306 1485 aaKnown RBP eCLIP20■□□□□ 0.791e-6■■■■□ 26.1
CLDND1-227ENST00000513452 FBLN2P98095 1184 aa19.98■□□□□ 0.79
CLDND1-227ENST00000513452 TARBP1Q13395 1621 aaKnown RBP19.98■□□□□ 0.79
CLDND1-227ENST00000513452 POLA1P09884 1462 aaPredicted RBP19.89■□□□□ 0.77
CLDND1-227ENST00000513452 RAD54L2Q9Y4B4 1467 aa19.83■□□□□ 0.76
CLDND1-227ENST00000513452 CLASP1Q7Z460 1538 aa19.82■□□□□ 0.76
CLDND1-227ENST00000513452 SNAPC4Q5SXM2 1469 aa19.81■□□□□ 0.76
CLDND1-227ENST00000513452 TDRD9Q8NDG6 1382 aaKnown RBP19.81■□□□□ 0.76
CLDND1-227ENST00000513452 SOGA1O94964 1423 aa19.76■□□□□ 0.75
CLDND1-227ENST00000513452 SYNJ1O43426 1573 aa19.76■□□□□ 0.75
CLDND1-227ENST00000513452 CHMP7Q8WUX9 453 aaPredicted RBP19.72■□□□□ 0.75
CLDND1-227ENST00000513452 WDR97A6NE52 1622 aa19.72■□□□□ 0.75
CLDND1-227ENST00000513452 MAGI1Q96QZ7 1491 aaPredicted RBP19.71■□□□□ 0.75
CLDND1-227ENST00000513452 FGD5Q6ZNL6 1462 aa19.7■□□□□ 0.74
CLDND1-227ENST00000513452 GRIN2BQ13224 1484 aa19.67■□□□□ 0.74
CLDND1-227ENST00000513452 SYNJ2O15056 1496 aa19.66■□□□□ 0.74
CLDND1-227ENST00000513452 GAPVD1Q14C86 1478 aa19.65■□□□□ 0.74
CLDND1-227ENST00000513452 CUX1P39880 1505 aa19.61■□□□□ 0.73
CLDND1-227ENST00000513452 PBRM1Q86U86 1689 aa19.56■□□□□ 0.72
CLDND1-227ENST00000513452 ERCC6L2Q5T890 1561 aa19.49■□□□□ 0.71
CLDND1-227ENST00000513452 ABCA5Q8WWZ7 1642 aa19.47■□□□□ 0.71
CLDND1-227ENST00000513452 ABCA10Q8WWZ4 1543 aa19.43■□□□□ 0.7
CLDND1-227ENST00000513452 GRIN2AQ12879 1464 aa19.42■□□□□ 0.7
CLDND1-227ENST00000513452 CEP170Q5SW79 1584 aa19.4■□□□□ 0.7
CLDND1-227ENST00000513452 ADAMTS12P58397 1594 aa19.36■□□□□ 0.69
CLDND1-227ENST00000513452 NUP160Q12769 1436 aa19.36■□□□□ 0.69
CLDND1-227ENST00000513452 SHROOM2Q13796 1616 aa19.33■□□□□ 0.69
CLDND1-227ENST00000513452 KIF13AQ9H1H9 1805 aa19.32■□□□□ 0.68
CLDND1-227ENST00000513452 FHAD1B1AJZ9 1412 aa19.25■□□□□ 0.67
CLDND1-227ENST00000513452 WRNQ14191 1432 aaPredicted RBP eCLIP19.25■□□□□ 0.67
CLDND1-227ENST00000513452 PRG4Q92954 1404 aaPredicted RBP19.22■□□□□ 0.67
CLDND1-227ENST00000513452 ABCC10Q5T3U5 1492 aa19.18■□□□□ 0.66
CLDND1-227ENST00000513452 FAM69CQ0P6D2 419 aa19.18■□□□□ 0.66
CLDND1-227ENST00000513452 ERICH3Q5RHP9 1530 aa19.18■□□□□ 0.66
CLDND1-227ENST00000513452 BIVM-ERCC5R4GMW8 1640 aa19.15■□□□□ 0.66
CLDND1-227ENST00000513452 TOP2BQ02880 1626 aa19.14■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms