RNA–Protein interactions for RNA: ENST00000512962.5

SDHA-215, Transcript of succinate dehydrogenase complex flavoprotein subunit A, humanhuman

TSL 3

Gene SDHA, Length 935 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDHA-215ENST00000512962 AEBP2Q6ZN18 517 aaPredicted RBP35.36■■■■□ 3.25
SDHA-215ENST00000512962 CHIC1Q5VXU3 224 aa35.3■■■■□ 3.24
SDHA-215ENST00000512962 NISCHQ9Y2I1 1504 aa31.82■■■□□ 2.68
SDHA-215ENST00000512962 PHF23Q9BUL5 403 aaPredicted RBP31.18■■■□□ 2.58
SDHA-215ENST00000512962 SENP3Q9H4L4 574 aaPredicted RBP29.79■■■□□ 2.36
SDHA-215ENST00000512962 ABCC9O60706 1549 aa29.4■■■□□ 2.3
SDHA-215ENST00000512962 PLPPR3Q6T4P5 718 aa29.01■■■□□ 2.23
SDHA-215ENST00000512962 CCDC180Q9P1Z9 1646 aa28.83■■■□□ 2.21
SDHA-215ENST00000512962 DNAJC5BQ9UF47 199 aa28.13■■■□□ 2.09
SDHA-215ENST00000512962 RB1CC1Q8TDY2 1594 aa27.65■■■□□ 2.02
SDHA-215ENST00000512962 FOXD1Q16676 465 aa27.59■■■□□ 2.01
SDHA-215ENST00000512962 NACADO15069 1562 aa27.31■■□□□ 1.96
SDHA-215ENST00000512962 UNC13AQ9UPW8 1703 aa27.27■■□□□ 1.96
SDHA-215ENST00000512962 ADRA2BP18089 450 aa27.24■■□□□ 1.95
SDHA-215ENST00000512962 PABPN1Q86U42 306 aaKnown RBP eCLIP27.23■■□□□ 1.95
SDHA-215ENST00000512962 PPP6R1Q9UPN7 881 aa27.23■■□□□ 1.95
SDHA-215ENST00000512962 BICRAQ9NZM4 1560 aa27.04■■□□□ 1.92
SDHA-215ENST00000512962 DCAF8L2P0C7V8 631 aa26.95■■□□□ 1.9
SDHA-215ENST00000512962 MYO15BQ96JP2 1530 aa26.71■■□□□ 1.87
SDHA-215ENST00000512962 CC2D2AQ9P2K1 1620 aa26.55■■□□□ 1.84
SDHA-215ENST00000512962 CECR2Q9BXF3 1484 aa26.49■■□□□ 1.83
SDHA-215ENST00000512962 SHROOM4Q9ULL8 1493 aa26.37■■□□□ 1.81
SDHA-215ENST00000512962 EIF4G1Q04637 1599 aaKnown RBP26.33■■□□□ 1.81
SDHA-215ENST00000512962 SCRIBQ14160 1630 aa26.3■■□□□ 1.8
SDHA-215ENST00000512962 ZCCHC6Q5VYS8 1495 aaKnown RBP26.28■■□□□ 1.8
SDHA-215ENST00000512962 PIAS4Q8N2W9 510 aaPredicted RBP26.21■■□□□ 1.79
SDHA-215ENST00000512962 DCAF1Q9Y4B6 1507 aa26.19■■□□□ 1.78
SDHA-215ENST00000512962 KCNA4P22459 653 aa26.08■■□□□ 1.77
SDHA-215ENST00000512962 DNAJC5Q9H3Z4 198 aa26.07■■□□□ 1.76
SDHA-215ENST00000512962 PPP4R3CPQ6ZMV5 832 aa25.69■■□□□ 1.7
SDHA-215ENST00000512962 CUX2O14529 1486 aa25.46■■□□□ 1.67
SDHA-215ENST00000512962 ERCC6Q03468 1493 aa25.3■■□□□ 1.64
SDHA-215ENST00000512962 EHMT2Q96KQ7 1210 aa25.23■■□□□ 1.63
SDHA-215ENST00000512962 NCAPD3P42695 1498 aa25.21■■□□□ 1.63
SDHA-215ENST00000512962 NCBP3Q53F19 620 aaKnown RBP25.2■■□□□ 1.62
SDHA-215ENST00000512962 NESP48681 1621 aa25.15■■□□□ 1.62
SDHA-215ENST00000512962 ATAD2BQ9ULI0 1458 aa25.11■■□□□ 1.61
SDHA-215ENST00000512962 MSH5O43196 834 aa25.06■■□□□ 1.6
SDHA-215ENST00000512962 THOC2Q8NI27 1593 aaKnown RBP25.03■■□□□ 1.6
SDHA-215ENST00000512962 HMGXB3Q12766 1538 aa25.02■■□□□ 1.6
SDHA-215ENST00000512962 SMARCA4P51532 1647 aa25■■□□□ 1.59
SDHA-215ENST00000512962 SLC4A1APQ9BWU0 796 aaKnown RBP24.95■■□□□ 1.58
SDHA-215ENST00000512962 SMARCA2P51531 1590 aa24.94■■□□□ 1.58
SDHA-215ENST00000512962 NPM3O75607 178 aaKnown RBP24.92■■□□□ 1.58
SDHA-215ENST00000512962 KIF21AQ7Z4S6 1674 aa24.85■■□□□ 1.57
SDHA-215ENST00000512962 SCAF1Q9H7N4 1312 aaKnown RBP24.82■■□□□ 1.56
SDHA-215ENST00000512962 BAZ1BQ9UIG0 1483 aaKnown RBP24.8■■□□□ 1.56
SDHA-215ENST00000512962 LAMC3Q9Y6N6 1575 aa24.76■■□□□ 1.55
SDHA-215ENST00000512962 CNKSR2Q8WXI2 1034 aa24.76■■□□□ 1.55
SDHA-215ENST00000512962 PEG3Q9GZU2 1588 aa24.72■■□□□ 1.55
SDHA-215ENST00000512962 TRIM41Q8WV44 630 aa24.72■■□□□ 1.55
SDHA-215ENST00000512962 BAZ1AQ9NRL2 1556 aaPredicted RBP24.7■■□□□ 1.54
SDHA-215ENST00000512962 MROH2BQ7Z745 1585 aa24.59■■□□□ 1.53
SDHA-215ENST00000512962 CSRNP3Q8WYN3 585 aa24.55■■□□□ 1.52
SDHA-215ENST00000512962 PDS5BQ9NTI5 1447 aa24.53■■□□□ 1.52
SDHA-215ENST00000512962 MAPK8IP2Q13387 824 aaPredicted RBP24.48■■□□□ 1.51
SDHA-215ENST00000512962 WDR62O43379 1518 aa24.47■■□□□ 1.51
SDHA-215ENST00000512962 MRC2Q9UBG0 1479 aa24.46■■□□□ 1.51
SDHA-215ENST00000512962 CADPSQ9ULU8 1353 aa24.39■■□□□ 1.49
SDHA-215ENST00000512962 WIZO95785 1651 aa24.3■■□□□ 1.48
SDHA-215ENST00000512962 CEP164Q9UPV0 1460 aa24.23■■□□□ 1.47
SDHA-215ENST00000512962 FANCD2Q9BXW9 1451 aa24.18■■□□□ 1.46
SDHA-215ENST00000512962 URB2Q14146 1524 aaKnown RBP24.1■■□□□ 1.45
SDHA-215ENST00000512962 OSCARQ8IYS5 282 aa24.1■■□□□ 1.45
SDHA-215ENST00000512962 RIMBP3CA6NJZ7 1639 aa24.1■■□□□ 1.45
SDHA-215ENST00000512962 RIMBP3BA6NNM3 1639 aa24.1■■□□□ 1.45
SDHA-215ENST00000512962 RIMBP3Q9UFD9 1639 aa24.1■■□□□ 1.45
SDHA-215ENST00000512962 RNF216Q9NWF9 866 aaPredicted RBP24.07■■□□□ 1.44
SDHA-215ENST00000512962 ZBTB22O15209 634 aa24.05■■□□□ 1.44
SDHA-215ENST00000512962 CFTRP13569 1480 aa24.05■■□□□ 1.44
SDHA-215ENST00000512962 DMRT2Q9Y5R5 561 aa23.94■■□□□ 1.42
SDHA-215ENST00000512962 ARHGEF11O15085 1522 aa23.91■■□□□ 1.42
SDHA-215ENST00000512962 ZNF608Q9ULD9 1512 aaPredicted RBP23.9■■□□□ 1.42
SDHA-215ENST00000512962 PRDM2Q13029 1718 aa23.89■■□□□ 1.41
SDHA-215ENST00000512962 TOP2AP11388 1531 aaKnown RBP23.86■■□□□ 1.41
SDHA-215ENST00000512962 RSF1Q96T23 1441 aaPredicted RBP23.79■■□□□ 1.4
SDHA-215ENST00000512962 HOXD11P31277 338 aaPredicted RBP23.77■■□□□ 1.4
SDHA-215ENST00000512962 EIF4G3O43432 1585 aaKnown RBP23.76■■□□□ 1.39
SDHA-215ENST00000512962 IFT140Q96RY7 1462 aa23.74■■□□□ 1.39
SDHA-215ENST00000512962 FOXD4L1Q9NU39 408 aa23.73■■□□□ 1.39
SDHA-215ENST00000512962 CHD1O14646 1710 aa23.73■■□□□ 1.39
SDHA-215ENST00000512962 TOPBP1Q92547 1522 aa23.69■■□□□ 1.38
SDHA-215ENST00000512962 ARAP1Q96P48 1450 aa23.67■■□□□ 1.38
SDHA-215ENST00000512962 CYB5RLQ6IPT4 315 aa23.65■■□□□ 1.38
SDHA-215ENST00000512962 TARBP1Q13395 1621 aaKnown RBP23.59■■□□□ 1.37
SDHA-215ENST00000512962 CCDC88BA6NC98 1476 aa23.59■■□□□ 1.37
SDHA-215ENST00000512962 DNMBPQ6XZF7 1577 aa23.55■■□□□ 1.36
SDHA-215ENST00000512962 AQRO60306 1485 aaKnown RBP eCLIP23.55■■□□□ 1.361e-7■■■■■ 30.9
SDHA-215ENST00000512962 TRHP20396 242 aaPredicted RBP23.52■■□□□ 1.36
SDHA-215ENST00000512962 ABCC8Q09428 1581 aa23.43■■□□□ 1.34
SDHA-215ENST00000512962 POLA1P09884 1462 aaPredicted RBP23.42■■□□□ 1.34
SDHA-215ENST00000512962 CLASP1Q7Z460 1538 aa23.38■■□□□ 1.33
SDHA-215ENST00000512962 FBLN2P98095 1184 aa23.38■■□□□ 1.33
SDHA-215ENST00000512962 RAD54L2Q9Y4B4 1467 aa23.37■■□□□ 1.33
SDHA-215ENST00000512962 SLC4A2P04920 1241 aa23.33■■□□□ 1.33
SDHA-215ENST00000512962 SNAPC4Q5SXM2 1469 aa23.3■■□□□ 1.32
SDHA-215ENST00000512962 TDRD9Q8NDG6 1382 aaKnown RBP23.28■■□□□ 1.32
SDHA-215ENST00000512962 SYNJ1O43426 1573 aa23.21■■□□□ 1.31
SDHA-215ENST00000512962 SOGA1O94964 1423 aa23.2■■□□□ 1.3
SDHA-215ENST00000512962 FGD5Q6ZNL6 1462 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms