RNA–Protein interactions for RNA: ENST00000512928.1

KDM3B-208, Transcript of lysine demethylase 3B, humanhuman

TSL 2

Gene KDM3B, Length 627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3B-208ENST00000512928 NISCHQ9Y2I1 1504 aa15.86■□□□□ 0.13
KDM3B-208ENST00000512928 ABCC9O60706 1549 aa14.34□□□□□ -0.11
KDM3B-208ENST00000512928 CCDC180Q9P1Z9 1646 aa14.15□□□□□ -0.14
KDM3B-208ENST00000512928 DNAJC5BQ9UF47 199 aa13.62□□□□□ -0.23
KDM3B-208ENST00000512928 RB1CC1Q8TDY2 1594 aa13.44□□□□□ -0.26
KDM3B-208ENST00000512928 DCAF8L2P0C7V8 631 aa13.43□□□□□ -0.26
KDM3B-208ENST00000512928 UNC13AQ9UPW8 1703 aa13.35□□□□□ -0.27
KDM3B-208ENST00000512928 NACADO15069 1562 aa13.33□□□□□ -0.28
KDM3B-208ENST00000512928 PABPN1Q86U42 306 aaKnown RBP eCLIP13.32□□□□□ -0.28
KDM3B-208ENST00000512928 AEBP2Q6ZN18 517 aaPredicted RBP13.3□□□□□ -0.28
KDM3B-208ENST00000512928 ZCCHC6Q5VYS8 1495 aaKnown RBP13.19□□□□□ -0.3
KDM3B-208ENST00000512928 BICRAQ9NZM4 1560 aa13.19□□□□□ -0.3
KDM3B-208ENST00000512928 MYO15BQ96JP2 1530 aa13.15□□□□□ -0.3
KDM3B-208ENST00000512928 DCAF1Q9Y4B6 1507 aa13.07□□□□□ -0.32
KDM3B-208ENST00000512928 SCRIBQ14160 1630 aa12.98□□□□□ -0.33
KDM3B-208ENST00000512928 CC2D2AQ9P2K1 1620 aa12.92□□□□□ -0.34
KDM3B-208ENST00000512928 CECR2Q9BXF3 1484 aa12.85□□□□□ -0.35
KDM3B-208ENST00000512928 EIF4G1Q04637 1599 aaKnown RBP12.82□□□□□ -0.36
KDM3B-208ENST00000512928 SHROOM4Q9ULL8 1493 aa12.79□□□□□ -0.36
KDM3B-208ENST00000512928 CHIC1Q5VXU3 224 aa12.78□□□□□ -0.36
KDM3B-208ENST00000512928 DNAJC5Q9H3Z4 198 aa12.45□□□□□ -0.42
KDM3B-208ENST00000512928 SMARCA4P51532 1647 aa12.36□□□□□ -0.43
KDM3B-208ENST00000512928 BAZ1AQ9NRL2 1556 aaPredicted RBP12.32□□□□□ -0.44
KDM3B-208ENST00000512928 NESP48681 1621 aa12.32□□□□□ -0.44
KDM3B-208ENST00000512928 ERCC6Q03468 1493 aa12.3□□□□□ -0.44
KDM3B-208ENST00000512928 ATAD2BQ9ULI0 1458 aa12.29□□□□□ -0.44
KDM3B-208ENST00000512928 SMARCA2P51531 1590 aa12.29□□□□□ -0.44
KDM3B-208ENST00000512928 NCAPD3P42695 1498 aa12.28□□□□□ -0.44
KDM3B-208ENST00000512928 CUX2O14529 1486 aa12.26□□□□□ -0.45
KDM3B-208ENST00000512928 MROH2BQ7Z745 1585 aa12.24□□□□□ -0.45
KDM3B-208ENST00000512928 HMGXB3Q12766 1538 aa12.23□□□□□ -0.45
KDM3B-208ENST00000512928 BAZ1BQ9UIG0 1483 aaKnown RBP12.23□□□□□ -0.45
KDM3B-208ENST00000512928 PEG3Q9GZU2 1588 aa12.18□□□□□ -0.46
KDM3B-208ENST00000512928 THOC2Q8NI27 1593 aaKnown RBP12.18□□□□□ -0.46
KDM3B-208ENST00000512928 KIF21AQ7Z4S6 1674 aa12.16□□□□□ -0.46
KDM3B-208ENST00000512928 WIZO95785 1651 aa12.13□□□□□ -0.47
KDM3B-208ENST00000512928 RSF1Q96T23 1441 aaPredicted RBP12.04□□□□□ -0.48
KDM3B-208ENST00000512928 LAMC3Q9Y6N6 1575 aa12.03□□□□□ -0.48
KDM3B-208ENST00000512928 TOP2AP11388 1531 aaKnown RBP11.97□□□□□ -0.49
KDM3B-208ENST00000512928 TRIM41Q8WV44 630 aa11.96□□□□□ -0.49
KDM3B-208ENST00000512928 PDS5BQ9NTI5 1447 aa11.94□□□□□ -0.5
KDM3B-208ENST00000512928 CADPSQ9ULU8 1353 aa11.94□□□□□ -0.5
KDM3B-208ENST00000512928 MRC2Q9UBG0 1479 aa11.91□□□□□ -0.5
KDM3B-208ENST00000512928 WDR62O43379 1518 aa11.91□□□□□ -0.5
KDM3B-208ENST00000512928 CEP164Q9UPV0 1460 aa11.84□□□□□ -0.51
KDM3B-208ENST00000512928 CCDC88BA6NC98 1476 aa11.83□□□□□ -0.52
KDM3B-208ENST00000512928 CFTRP13569 1480 aa11.83□□□□□ -0.52
KDM3B-208ENST00000512928 FANCD2Q9BXW9 1451 aa11.83□□□□□ -0.52
KDM3B-208ENST00000512928 URB2Q14146 1524 aaKnown RBP11.8□□□□□ -0.52
KDM3B-208ENST00000512928 SUPT5HO00267 1087 aaKnown RBP11.76□□□□□ -0.53
KDM3B-208ENST00000512928 PRDM2Q13029 1718 aa11.76□□□□□ -0.53
KDM3B-208ENST00000512928 ZNF608Q9ULD9 1512 aaPredicted RBP11.7□□□□□ -0.54
KDM3B-208ENST00000512928 RIMBP3CA6NJZ7 1639 aa11.7□□□□□ -0.54
KDM3B-208ENST00000512928 RIMBP3BA6NNM3 1639 aa11.7□□□□□ -0.54
KDM3B-208ENST00000512928 RIMBP3Q9UFD9 1639 aa11.7□□□□□ -0.54
KDM3B-208ENST00000512928 OSCARQ8IYS5 282 aa11.65□□□□□ -0.54
KDM3B-208ENST00000512928 TOPBP1Q92547 1522 aa11.62□□□□□ -0.55
KDM3B-208ENST00000512928 EIF4G3O43432 1585 aaKnown RBP11.62□□□□□ -0.55
KDM3B-208ENST00000512928 CHD1O14646 1710 aa11.6□□□□□ -0.55
KDM3B-208ENST00000512928 DNMBPQ6XZF7 1577 aa11.6□□□□□ -0.55
KDM3B-208ENST00000512928 ARHGEF11O15085 1522 aa11.6□□□□□ -0.55
KDM3B-208ENST00000512928 ABCC8Q09428 1581 aa11.59□□□□□ -0.55
KDM3B-208ENST00000512928 IFT140Q96RY7 1462 aa11.57□□□□□ -0.56
KDM3B-208ENST00000512928 AQRO60306 1485 aaKnown RBP eCLIP11.54□□□□□ -0.561e-6■■■□□ 15.5
KDM3B-208ENST00000512928 TARBP1Q13395 1621 aaKnown RBP11.53□□□□□ -0.56
KDM3B-208ENST00000512928 POLA1P09884 1462 aaPredicted RBP11.52□□□□□ -0.56
KDM3B-208ENST00000512928 ARAP1Q96P48 1450 aa11.5□□□□□ -0.57
KDM3B-208ENST00000512928 RAD54L2Q9Y4B4 1467 aa11.5□□□□□ -0.57
KDM3B-208ENST00000512928 CYB5RLQ6IPT4 315 aa11.49□□□□□ -0.57
KDM3B-208ENST00000512928 SENP3Q9H4L4 574 aaPredicted RBP11.49□□□□□ -0.57
KDM3B-208ENST00000512928 FGD5Q6ZNL6 1462 aa11.49□□□□□ -0.57
KDM3B-208ENST00000512928 CUX1P39880 1505 aa11.49□□□□□ -0.57
KDM3B-208ENST00000512928 SOGA1O94964 1423 aa11.48□□□□□ -0.57
KDM3B-208ENST00000512928 FBLN2P98095 1184 aa11.45□□□□□ -0.58
KDM3B-208ENST00000512928 TDRD9Q8NDG6 1382 aaKnown RBP11.44□□□□□ -0.58
KDM3B-208ENST00000512928 SNAPC4Q5SXM2 1469 aa11.42□□□□□ -0.58
KDM3B-208ENST00000512928 TRHP20396 242 aaPredicted RBP11.39□□□□□ -0.59
KDM3B-208ENST00000512928 WRNQ14191 1432 aaPredicted RBP eCLIP11.39□□□□□ -0.59
KDM3B-208ENST00000512928 CLASP1Q7Z460 1538 aa11.38□□□□□ -0.59
KDM3B-208ENST00000512928 WDR97A6NE52 1622 aa11.38□□□□□ -0.59
KDM3B-208ENST00000512928 SYNJ1O43426 1573 aa11.37□□□□□ -0.59
KDM3B-208ENST00000512928 TOP2BQ02880 1626 aa11.36□□□□□ -0.59
KDM3B-208ENST00000512928 GRIN2BQ13224 1484 aa11.36□□□□□ -0.59
KDM3B-208ENST00000512928 BIVM-ERCC5R4GMW8 1640 aa11.35□□□□□ -0.59
KDM3B-208ENST00000512928 PBRM1Q86U86 1689 aa11.35□□□□□ -0.59
KDM3B-208ENST00000512928 GAPVD1Q14C86 1478 aa11.34□□□□□ -0.59
KDM3B-208ENST00000512928 CHMP7Q8WUX9 453 aaPredicted RBP11.34□□□□□ -0.59
KDM3B-208ENST00000512928 ABCA10Q8WWZ4 1543 aa11.34□□□□□ -0.59
KDM3B-208ENST00000512928 MAGI1Q96QZ7 1491 aaPredicted RBP11.32□□□□□ -0.6
KDM3B-208ENST00000512928 ERCC6L2Q5T890 1561 aa11.32□□□□□ -0.6
KDM3B-208ENST00000512928 ABCA5Q8WWZ7 1642 aa11.31□□□□□ -0.6
KDM3B-208ENST00000512928 SYNJ2O15056 1496 aa11.29□□□□□ -0.6
KDM3B-208ENST00000512928 PHF23Q9BUL5 403 aaPredicted RBP11.28□□□□□ -0.6
KDM3B-208ENST00000512928 ADAMTS12P58397 1594 aa11.23□□□□□ -0.61
KDM3B-208ENST00000512928 CEP170Q5SW79 1584 aa11.22□□□□□ -0.61
KDM3B-208ENST00000512928 GRIN2AQ12879 1464 aa11.21□□□□□ -0.61
KDM3B-208ENST00000512928 ERICH3Q5RHP9 1530 aa11.2□□□□□ -0.62
KDM3B-208ENST00000512928 FHAD1B1AJZ9 1412 aa11.19□□□□□ -0.62
KDM3B-208ENST00000512928 KIF27Q86VH2 1401 aa11.16□□□□□ -0.62
KDM3B-208ENST00000512928 KIF13AQ9H1H9 1805 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms