RNA–Protein interactions for RNA: ENST00000512707.1

PFDN1-204, Transcript of prefoldin subunit 1, humanhuman

TSL 2

Gene PFDN1, Length 798 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PFDN1-204ENST00000512707 NISCHQ9Y2I1 1504 aa25.25■■□□□ 1.63
PFDN1-204ENST00000512707 CCDC180Q9P1Z9 1646 aa22.27■■□□□ 1.16
PFDN1-204ENST00000512707 CHIC1Q5VXU3 224 aa21.98■■□□□ 1.11
PFDN1-204ENST00000512707 AEBP2Q6ZN18 517 aaPredicted RBP21.93■■□□□ 1.1
PFDN1-204ENST00000512707 ABCC9O60706 1549 aa21.76■■□□□ 1.07
PFDN1-204ENST00000512707 ZCCHC6Q5VYS8 1495 aaKnown RBP21.13■□□□□ 0.97
PFDN1-204ENST00000512707 DCAF8L2P0C7V8 631 aa20.96■□□□□ 0.95
PFDN1-204ENST00000512707 DCAF1Q9Y4B6 1507 aa20.94■□□□□ 0.94
PFDN1-204ENST00000512707 MYO15BQ96JP2 1530 aa20.85■□□□□ 0.93
PFDN1-204ENST00000512707 NACADO15069 1562 aa20.82■□□□□ 0.92
PFDN1-204ENST00000512707 RB1CC1Q8TDY2 1594 aa20.74■□□□□ 0.91
PFDN1-204ENST00000512707 DNAJC5BQ9UF47 199 aa20.58■□□□□ 0.89
PFDN1-204ENST00000512707 SCRIBQ14160 1630 aa20.35■□□□□ 0.85
PFDN1-204ENST00000512707 UNC13AQ9UPW8 1703 aa20.27■□□□□ 0.83
PFDN1-204ENST00000512707 SHROOM4Q9ULL8 1493 aa20.26■□□□□ 0.83
PFDN1-204ENST00000512707 PABPN1Q86U42 306 aaKnown RBP eCLIP20.16■□□□□ 0.82
PFDN1-204ENST00000512707 BICRAQ9NZM4 1560 aa20.09■□□□□ 0.81
PFDN1-204ENST00000512707 CC2D2AQ9P2K1 1620 aa19.7■□□□□ 0.74
PFDN1-204ENST00000512707 CECR2Q9BXF3 1484 aa19.65■□□□□ 0.74
PFDN1-204ENST00000512707 EIF4G1Q04637 1599 aaKnown RBP19.61■□□□□ 0.73
PFDN1-204ENST00000512707 BAZ1AQ9NRL2 1556 aaPredicted RBP19.58■□□□□ 0.73
PFDN1-204ENST00000512707 SMARCA4P51532 1647 aa19.5■□□□□ 0.71
PFDN1-204ENST00000512707 MROH2BQ7Z745 1585 aa19.44■□□□□ 0.7
PFDN1-204ENST00000512707 RSF1Q96T23 1441 aaPredicted RBP19.42■□□□□ 0.7
PFDN1-204ENST00000512707 SUPT5HO00267 1087 aaKnown RBP19.34■□□□□ 0.69
PFDN1-204ENST00000512707 PHF23Q9BUL5 403 aaPredicted RBP19.34■□□□□ 0.69
PFDN1-204ENST00000512707 SMARCA2P51531 1590 aa19.32■□□□□ 0.68
PFDN1-204ENST00000512707 PEG3Q9GZU2 1588 aa19.29■□□□□ 0.68
PFDN1-204ENST00000512707 WIZO95785 1651 aa19.26■□□□□ 0.67
PFDN1-204ENST00000512707 ATAD2BQ9ULI0 1458 aa19.25■□□□□ 0.67
PFDN1-204ENST00000512707 NCAPD3P42695 1498 aa19.18■□□□□ 0.66
PFDN1-204ENST00000512707 BAZ1BQ9UIG0 1483 aaKnown RBP19.18■□□□□ 0.66
PFDN1-204ENST00000512707 HMGXB3Q12766 1538 aa19.15■□□□□ 0.66
PFDN1-204ENST00000512707 TOP2AP11388 1531 aaKnown RBP19.13■□□□□ 0.65
PFDN1-204ENST00000512707 DNAJC5Q9H3Z4 198 aa19.08■□□□□ 0.64
PFDN1-204ENST00000512707 CUX2O14529 1486 aa18.9■□□□□ 0.62
PFDN1-204ENST00000512707 CCDC88BA6NC98 1476 aa18.87■□□□□ 0.61
PFDN1-204ENST00000512707 ERCC6Q03468 1493 aa18.81■□□□□ 0.6
PFDN1-204ENST00000512707 CADPSQ9ULU8 1353 aa18.67■□□□□ 0.58
PFDN1-204ENST00000512707 NESP48681 1621 aa18.64■□□□□ 0.57
PFDN1-204ENST00000512707 CFTRP13569 1480 aa18.64■□□□□ 0.57
PFDN1-204ENST00000512707 LAMC3Q9Y6N6 1575 aa18.63■□□□□ 0.57
PFDN1-204ENST00000512707 SENP3Q9H4L4 574 aaPredicted RBP18.6■□□□□ 0.57
PFDN1-204ENST00000512707 THOC2Q8NI27 1593 aaKnown RBP18.57■□□□□ 0.56
PFDN1-204ENST00000512707 PRDM2Q13029 1718 aa18.54■□□□□ 0.56
PFDN1-204ENST00000512707 PDS5BQ9NTI5 1447 aa18.51■□□□□ 0.55
PFDN1-204ENST00000512707 KIF21AQ7Z4S6 1674 aa18.46■□□□□ 0.55
PFDN1-204ENST00000512707 FANCD2Q9BXW9 1451 aa18.46■□□□□ 0.54
PFDN1-204ENST00000512707 CEP164Q9UPV0 1460 aa18.41■□□□□ 0.54
PFDN1-204ENST00000512707 WRNQ14191 1432 aaPredicted RBP eCLIP18.34■□□□□ 0.53
PFDN1-204ENST00000512707 ABCC8Q09428 1581 aa18.33■□□□□ 0.52
PFDN1-204ENST00000512707 TRIM41Q8WV44 630 aa18.28■□□□□ 0.52
PFDN1-204ENST00000512707 MRC2Q9UBG0 1479 aa18.27■□□□□ 0.52
PFDN1-204ENST00000512707 WDR62O43379 1518 aa18.25■□□□□ 0.51
PFDN1-204ENST00000512707 DNMBPQ6XZF7 1577 aa18.25■□□□□ 0.51
PFDN1-204ENST00000512707 TOP2BQ02880 1626 aa18.23■□□□□ 0.51
PFDN1-204ENST00000512707 CUX1P39880 1505 aa18.22■□□□□ 0.51
PFDN1-204ENST00000512707 SYNJ1O43426 1573 aa18.21■□□□□ 0.51
PFDN1-204ENST00000512707 BIVM-ERCC5R4GMW8 1640 aa18.21■□□□□ 0.51
PFDN1-204ENST00000512707 URB2Q14146 1524 aaKnown RBP18.2■□□□□ 0.5
PFDN1-204ENST00000512707 TOPBP1Q92547 1522 aa18.2■□□□□ 0.5
PFDN1-204ENST00000512707 PLPPR3Q6T4P5 718 aa18.13■□□□□ 0.49
PFDN1-204ENST00000512707 FGD5Q6ZNL6 1462 aa18.11■□□□□ 0.49
PFDN1-204ENST00000512707 POLA1P09884 1462 aaPredicted RBP18.07■□□□□ 0.48
PFDN1-204ENST00000512707 SOGA1O94964 1423 aa18.04■□□□□ 0.48
PFDN1-204ENST00000512707 IFT140Q96RY7 1462 aa18■□□□□ 0.47
PFDN1-204ENST00000512707 RAD54L2Q9Y4B4 1467 aa17.97■□□□□ 0.47
PFDN1-204ENST00000512707 ABCA10Q8WWZ4 1543 aa17.96■□□□□ 0.47
PFDN1-204ENST00000512707 EEA1Q15075 1411 aa17.96■□□□□ 0.47
PFDN1-204ENST00000512707 KIF27Q86VH2 1401 aa17.95■□□□□ 0.46
PFDN1-204ENST00000512707 TARBP1Q13395 1621 aaKnown RBP17.94■□□□□ 0.46
PFDN1-204ENST00000512707 OSCARQ8IYS5 282 aa17.91■□□□□ 0.46
PFDN1-204ENST00000512707 WDR97A6NE52 1622 aa17.9■□□□□ 0.46
PFDN1-204ENST00000512707 FAM9AQ8IZU1 332 aaPredicted RBP17.86■□□□□ 0.45
PFDN1-204ENST00000512707 TDRD9Q8NDG6 1382 aaKnown RBP17.85■□□□□ 0.45
PFDN1-204ENST00000512707 GAPVD1Q14C86 1478 aa17.84■□□□□ 0.45
PFDN1-204ENST00000512707 ABCA5Q8WWZ7 1642 aa17.83■□□□□ 0.45
PFDN1-204ENST00000512707 RUSC2Q8N2Y8 1516 aa17.82■□□□□ 0.44
PFDN1-204ENST00000512707 CSRNP3Q8WYN3 585 aa17.81■□□□□ 0.44
PFDN1-204ENST00000512707 ZNF608Q9ULD9 1512 aaPredicted RBP17.81■□□□□ 0.44
PFDN1-204ENST00000512707 EIF4G3O43432 1585 aaKnown RBP17.8■□□□□ 0.44
PFDN1-204ENST00000512707 RIMBP3CA6NJZ7 1639 aa17.8■□□□□ 0.44
PFDN1-204ENST00000512707 RIMBP3BA6NNM3 1639 aa17.8■□□□□ 0.44
PFDN1-204ENST00000512707 RIMBP3Q9UFD9 1639 aa17.8■□□□□ 0.44
PFDN1-204ENST00000512707 AQRO60306 1485 aaKnown RBP eCLIP17.79■□□□□ 0.44
PFDN1-204ENST00000512707 GRIN2BQ13224 1484 aa17.78■□□□□ 0.44
PFDN1-204ENST00000512707 ERICH3Q5RHP9 1530 aa17.77■□□□□ 0.44
PFDN1-204ENST00000512707 PBRM1Q86U86 1689 aa17.74■□□□□ 0.43
PFDN1-204ENST00000512707 IGF1RP08069 1367 aa17.74■□□□□ 0.43
PFDN1-204ENST00000512707 CUL7Q14999 1698 aa17.73■□□□□ 0.43
PFDN1-204ENST00000512707 ARHGEF11O15085 1522 aa17.71■□□□□ 0.43
PFDN1-204ENST00000512707 MAGI1Q96QZ7 1491 aaPredicted RBP17.69■□□□□ 0.42
PFDN1-204ENST00000512707 CARMIL1Q5VZK9 1371 aa17.68■□□□□ 0.42
PFDN1-204ENST00000512707 KIF21BO75037 1637 aa17.68■□□□□ 0.42
PFDN1-204ENST00000512707 SNAPC4Q5SXM2 1469 aa17.67■□□□□ 0.42
PFDN1-204ENST00000512707 FHAD1B1AJZ9 1412 aa17.66■□□□□ 0.42
PFDN1-204ENST00000512707 PRXQ9BXM0 1461 aa17.66■□□□□ 0.42
PFDN1-204ENST00000512707 GOLGA3Q08378 1498 aa17.65■□□□□ 0.42
PFDN1-204ENST00000512707 RAPGEF2Q9Y4G8 1499 aa17.65■□□□□ 0.42
PFDN1-204ENST00000512707 ADAMTS12P58397 1594 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms