RNA–Protein interactions for RNA: ENST00000512687.5

CDK7-208, Transcript of cyclin dependent kinase 7, humanhuman

TSL 1 (best)

Gene CDK7, Length 905 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK7-208ENST00000512687 NISCHQ9Y2I1 1504 aa30.01■■■□□ 2.39
CDK7-208ENST00000512687 CCDC180Q9P1Z9 1646 aa26.91■■□□□ 1.9
CDK7-208ENST00000512687 ABCC9O60706 1549 aa26.53■■□□□ 1.84
CDK7-208ENST00000512687 AEBP2Q6ZN18 517 aaPredicted RBP26.3■■□□□ 1.8
CDK7-208ENST00000512687 CHIC1Q5VXU3 224 aa26.14■■□□□ 1.78
CDK7-208ENST00000512687 RB1CC1Q8TDY2 1594 aa25.39■■□□□ 1.66
CDK7-208ENST00000512687 NACADO15069 1562 aa25.27■■□□□ 1.64
CDK7-208ENST00000512687 UNC13AQ9UPW8 1703 aa25.05■■□□□ 1.6
CDK7-208ENST00000512687 DCAF8L2P0C7V8 631 aa25.03■■□□□ 1.6
CDK7-208ENST00000512687 MYO15BQ96JP2 1530 aa24.99■■□□□ 1.59
CDK7-208ENST00000512687 ZCCHC6Q5VYS8 1495 aaKnown RBP24.96■■□□□ 1.59
CDK7-208ENST00000512687 DCAF1Q9Y4B6 1507 aa24.8■■□□□ 1.56
CDK7-208ENST00000512687 BICRAQ9NZM4 1560 aa24.72■■□□□ 1.55
CDK7-208ENST00000512687 PABPN1Q86U42 306 aaKnown RBP eCLIP24.66■■□□□ 1.54
CDK7-208ENST00000512687 DNAJC5BQ9UF47 199 aa24.6■■□□□ 1.53
CDK7-208ENST00000512687 SCRIBQ14160 1630 aa24.52■■□□□ 1.52
CDK7-208ENST00000512687 SHROOM4Q9ULL8 1493 aa24.3■■□□□ 1.48
CDK7-208ENST00000512687 CC2D2AQ9P2K1 1620 aa24.05■■□□□ 1.44
CDK7-208ENST00000512687 EIF4G1Q04637 1599 aaKnown RBP24.04■■□□□ 1.44
CDK7-208ENST00000512687 CECR2Q9BXF3 1484 aa23.84■■□□□ 1.41
CDK7-208ENST00000512687 SMARCA4P51532 1647 aa23.41■■□□□ 1.34
CDK7-208ENST00000512687 NCAPD3P42695 1498 aa23.28■■□□□ 1.32
CDK7-208ENST00000512687 ATAD2BQ9ULI0 1458 aa23.28■■□□□ 1.32
CDK7-208ENST00000512687 BAZ1AQ9NRL2 1556 aaPredicted RBP23.27■■□□□ 1.32
CDK7-208ENST00000512687 SMARCA2P51531 1590 aa23.24■■□□□ 1.31
CDK7-208ENST00000512687 HMGXB3Q12766 1538 aa23.21■■□□□ 1.31
CDK7-208ENST00000512687 PEG3Q9GZU2 1588 aa23.16■■□□□ 1.3
CDK7-208ENST00000512687 MROH2BQ7Z745 1585 aa23.15■■□□□ 1.3
CDK7-208ENST00000512687 BAZ1BQ9UIG0 1483 aaKnown RBP23.06■■□□□ 1.28
CDK7-208ENST00000512687 WIZO95785 1651 aa22.96■■□□□ 1.27
CDK7-208ENST00000512687 PHF23Q9BUL5 403 aaPredicted RBP22.92■■□□□ 1.26
CDK7-208ENST00000512687 NESP48681 1621 aa22.91■■□□□ 1.26
CDK7-208ENST00000512687 ERCC6Q03468 1493 aa22.84■■□□□ 1.25
CDK7-208ENST00000512687 LAMC3Q9Y6N6 1575 aa22.78■■□□□ 1.24
CDK7-208ENST00000512687 KIF21AQ7Z4S6 1674 aa22.74■■□□□ 1.23
CDK7-208ENST00000512687 CUX2O14529 1486 aa22.73■■□□□ 1.23
CDK7-208ENST00000512687 RSF1Q96T23 1441 aaPredicted RBP22.71■■□□□ 1.23
CDK7-208ENST00000512687 THOC2Q8NI27 1593 aaKnown RBP22.7■■□□□ 1.22
CDK7-208ENST00000512687 TOP2AP11388 1531 aaKnown RBP22.62■■□□□ 1.21
CDK7-208ENST00000512687 CADPSQ9ULU8 1353 aa22.55■■□□□ 1.2
CDK7-208ENST00000512687 PDS5BQ9NTI5 1447 aa22.53■■□□□ 1.2
CDK7-208ENST00000512687 PRDM2Q13029 1718 aa22.45■■□□□ 1.18
CDK7-208ENST00000512687 SENP3Q9H4L4 574 aaPredicted RBP22.44■■□□□ 1.18
CDK7-208ENST00000512687 CFTRP13569 1480 aa22.41■■□□□ 1.18
CDK7-208ENST00000512687 MRC2Q9UBG0 1479 aa22.4■■□□□ 1.18
CDK7-208ENST00000512687 WDR62O43379 1518 aa22.37■■□□□ 1.17
CDK7-208ENST00000512687 CEP164Q9UPV0 1460 aa22.36■■□□□ 1.17
CDK7-208ENST00000512687 FANCD2Q9BXW9 1451 aa22.35■■□□□ 1.17
CDK7-208ENST00000512687 DNAJC5Q9H3Z4 198 aa22.32■■□□□ 1.16
CDK7-208ENST00000512687 CCDC88BA6NC98 1476 aa22.32■■□□□ 1.16
CDK7-208ENST00000512687 URB2Q14146 1524 aaKnown RBP22.21■■□□□ 1.15
CDK7-208ENST00000512687 TOPBP1Q92547 1522 aa21.99■■□□□ 1.11
CDK7-208ENST00000512687 DNMBPQ6XZF7 1577 aa21.96■■□□□ 1.11
CDK7-208ENST00000512687 ABCC8Q09428 1581 aa21.88■■□□□ 1.09
CDK7-208ENST00000512687 ZNF608Q9ULD9 1512 aaPredicted RBP21.87■■□□□ 1.09
CDK7-208ENST00000512687 IFT140Q96RY7 1462 aa21.87■■□□□ 1.09
CDK7-208ENST00000512687 TARBP1Q13395 1621 aaKnown RBP21.84■■□□□ 1.09
CDK7-208ENST00000512687 EIF4G3O43432 1585 aaKnown RBP21.83■■□□□ 1.09
CDK7-208ENST00000512687 SUPT5HO00267 1087 aaKnown RBP21.83■■□□□ 1.09
CDK7-208ENST00000512687 POLA1P09884 1462 aaPredicted RBP21.78■■□□□ 1.08
CDK7-208ENST00000512687 CUX1P39880 1505 aa21.75■■□□□ 1.07
CDK7-208ENST00000512687 FGD5Q6ZNL6 1462 aa21.69■■□□□ 1.06
CDK7-208ENST00000512687 RAD54L2Q9Y4B4 1467 aa21.69■■□□□ 1.06
CDK7-208ENST00000512687 CHD1O14646 1710 aa21.69■■□□□ 1.06
CDK7-208ENST00000512687 WDR97A6NE52 1622 aa21.67■■□□□ 1.06
CDK7-208ENST00000512687 AQRO60306 1485 aaKnown RBP eCLIP21.66■■□□□ 1.067e-8■■■■■ 26.9
CDK7-208ENST00000512687 OSCARQ8IYS5 282 aa21.62■■□□□ 1.05
CDK7-208ENST00000512687 SOGA1O94964 1423 aa21.62■■□□□ 1.05
CDK7-208ENST00000512687 PBRM1Q86U86 1689 aa21.55■■□□□ 1.04
CDK7-208ENST00000512687 TDRD9Q8NDG6 1382 aaKnown RBP21.54■■□□□ 1.04
CDK7-208ENST00000512687 RIMBP3CA6NJZ7 1639 aa21.53■■□□□ 1.04
CDK7-208ENST00000512687 RIMBP3BA6NNM3 1639 aa21.53■■□□□ 1.04
CDK7-208ENST00000512687 RIMBP3Q9UFD9 1639 aa21.53■■□□□ 1.04
CDK7-208ENST00000512687 BIVM-ERCC5R4GMW8 1640 aa21.53■■□□□ 1.04
CDK7-208ENST00000512687 SYNJ1O43426 1573 aa21.49■■□□□ 1.03
CDK7-208ENST00000512687 SNAPC4Q5SXM2 1469 aa21.49■■□□□ 1.03
CDK7-208ENST00000512687 TOP2BQ02880 1626 aa21.48■■□□□ 1.03
CDK7-208ENST00000512687 ABCA5Q8WWZ7 1642 aa21.48■■□□□ 1.03
CDK7-208ENST00000512687 TRIM41Q8WV44 630 aa21.46■■□□□ 1.03
CDK7-208ENST00000512687 ABCA10Q8WWZ4 1543 aa21.45■■□□□ 1.02
CDK7-208ENST00000512687 PLPPR3Q6T4P5 718 aa21.44■■□□□ 1.02
CDK7-208ENST00000512687 ARHGEF11O15085 1522 aa21.43■■□□□ 1.02
CDK7-208ENST00000512687 GRIN2BQ13224 1484 aa21.42■■□□□ 1.02
CDK7-208ENST00000512687 MAGI1Q96QZ7 1491 aaPredicted RBP21.41■■□□□ 1.02
CDK7-208ENST00000512687 WRNQ14191 1432 aaPredicted RBP eCLIP21.4■■□□□ 1.02
CDK7-208ENST00000512687 GAPVD1Q14C86 1478 aa21.39■■□□□ 1.01
CDK7-208ENST00000512687 FBLN2P98095 1184 aa21.36■■□□□ 1.01
CDK7-208ENST00000512687 CLASP1Q7Z460 1538 aa21.35■■□□□ 1.01
CDK7-208ENST00000512687 SYNJ2O15056 1496 aa21.33■■□□□ 1.01
CDK7-208ENST00000512687 ADAMTS12P58397 1594 aa21.28■■□□□ 1
CDK7-208ENST00000512687 ARAP1Q96P48 1450 aa21.25■□□□□ 0.99
CDK7-208ENST00000512687 CHMP7Q8WUX9 453 aaPredicted RBP21.24■□□□□ 0.99
CDK7-208ENST00000512687 ERICH3Q5RHP9 1530 aa21.19■□□□□ 0.98
CDK7-208ENST00000512687 GRIN2AQ12879 1464 aa21.18■□□□□ 0.98
CDK7-208ENST00000512687 CEP170Q5SW79 1584 aa21.17■□□□□ 0.98
CDK7-208ENST00000512687 CYB5RLQ6IPT4 315 aa21.12■□□□□ 0.97
CDK7-208ENST00000512687 FHAD1B1AJZ9 1412 aa21.11■□□□□ 0.97
CDK7-208ENST00000512687 NUP160Q12769 1436 aa21.09■□□□□ 0.97
CDK7-208ENST00000512687 SHROOM2Q13796 1616 aa21.07■□□□□ 0.96
CDK7-208ENST00000512687 ERCC6L2Q5T890 1561 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms