RNA–Protein interactions for RNA: ENST00000510217.1

PFDN1-203, Transcript of prefoldin subunit 1, humanhuman

TSL 2 BASIC

Gene PFDN1, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PFDN1-203ENST00000510217 NISCHQ9Y2I1 1504 aa25.63■■□□□ 1.69
PFDN1-203ENST00000510217 CCDC180Q9P1Z9 1646 aa22.97■■□□□ 1.27
PFDN1-203ENST00000510217 ABCC9O60706 1549 aa22.62■■□□□ 1.21
PFDN1-203ENST00000510217 RB1CC1Q8TDY2 1594 aa21.68■■□□□ 1.06
PFDN1-203ENST00000510217 NACADO15069 1562 aa21.59■■□□□ 1.05
PFDN1-203ENST00000510217 MYO15BQ96JP2 1530 aa21.39■■□□□ 1.02
PFDN1-203ENST00000510217 ZCCHC6Q5VYS8 1495 aaKnown RBP21.34■■□□□ 1.01
PFDN1-203ENST00000510217 DCAF8L2P0C7V8 631 aa21.34■■□□□ 1.01
PFDN1-203ENST00000510217 UNC13AQ9UPW8 1703 aa21.27■■□□□ 1
PFDN1-203ENST00000510217 DCAF1Q9Y4B6 1507 aa21.21■□□□□ 0.99
PFDN1-203ENST00000510217 BICRAQ9NZM4 1560 aa21.07■□□□□ 0.96
PFDN1-203ENST00000510217 PABPN1Q86U42 306 aaKnown RBP eCLIP21.03■□□□□ 0.96
PFDN1-203ENST00000510217 DNAJC5BQ9UF47 199 aa20.94■□□□□ 0.94
PFDN1-203ENST00000510217 SCRIBQ14160 1630 aa20.91■□□□□ 0.94
PFDN1-203ENST00000510217 SHROOM4Q9ULL8 1493 aa20.81■□□□□ 0.92
PFDN1-203ENST00000510217 EIF4G1Q04637 1599 aaKnown RBP20.52■□□□□ 0.88
PFDN1-203ENST00000510217 CC2D2AQ9P2K1 1620 aa20.49■□□□□ 0.87
PFDN1-203ENST00000510217 CHIC1Q5VXU3 224 aa20.41■□□□□ 0.86
PFDN1-203ENST00000510217 CECR2Q9BXF3 1484 aa20.35■□□□□ 0.85
PFDN1-203ENST00000510217 AEBP2Q6ZN18 517 aaPredicted RBP20.23■□□□□ 0.83
PFDN1-203ENST00000510217 SMARCA4P51532 1647 aa19.98■□□□□ 0.79
PFDN1-203ENST00000510217 NCAPD3P42695 1498 aa19.9■□□□□ 0.78
PFDN1-203ENST00000510217 BAZ1AQ9NRL2 1556 aaPredicted RBP19.89■□□□□ 0.77
PFDN1-203ENST00000510217 ATAD2BQ9ULI0 1458 aa19.89■□□□□ 0.77
PFDN1-203ENST00000510217 SMARCA2P51531 1590 aa19.86■□□□□ 0.77
PFDN1-203ENST00000510217 HMGXB3Q12766 1538 aa19.84■□□□□ 0.77
PFDN1-203ENST00000510217 PEG3Q9GZU2 1588 aa19.79■□□□□ 0.76
PFDN1-203ENST00000510217 MROH2BQ7Z745 1585 aa19.76■□□□□ 0.75
PFDN1-203ENST00000510217 BAZ1BQ9UIG0 1483 aaKnown RBP19.71■□□□□ 0.75
PFDN1-203ENST00000510217 WIZO95785 1651 aa19.56■□□□□ 0.72
PFDN1-203ENST00000510217 NESP48681 1621 aa19.53■□□□□ 0.72
PFDN1-203ENST00000510217 ERCC6Q03468 1493 aa19.5■□□□□ 0.71
PFDN1-203ENST00000510217 LAMC3Q9Y6N6 1575 aa19.45■□□□□ 0.7
PFDN1-203ENST00000510217 CUX2O14529 1486 aa19.42■□□□□ 0.7
PFDN1-203ENST00000510217 RSF1Q96T23 1441 aaPredicted RBP19.42■□□□□ 0.7
PFDN1-203ENST00000510217 THOC2Q8NI27 1593 aaKnown RBP19.36■□□□□ 0.69
PFDN1-203ENST00000510217 KIF21AQ7Z4S6 1674 aa19.35■□□□□ 0.69
PFDN1-203ENST00000510217 TOP2AP11388 1531 aaKnown RBP19.33■□□□□ 0.68
PFDN1-203ENST00000510217 CADPSQ9ULU8 1353 aa19.28■□□□□ 0.68
PFDN1-203ENST00000510217 PDS5BQ9NTI5 1447 aa19.25■□□□□ 0.67
PFDN1-203ENST00000510217 CFTRP13569 1480 aa19.16■□□□□ 0.66
PFDN1-203ENST00000510217 MRC2Q9UBG0 1479 aa19.14■□□□□ 0.65
PFDN1-203ENST00000510217 WDR62O43379 1518 aa19.12■□□□□ 0.65
PFDN1-203ENST00000510217 CEP164Q9UPV0 1460 aa19.1■□□□□ 0.65
PFDN1-203ENST00000510217 FANCD2Q9BXW9 1451 aa19.09■□□□□ 0.65
PFDN1-203ENST00000510217 PRDM2Q13029 1718 aa19.09■□□□□ 0.65
PFDN1-203ENST00000510217 CCDC88BA6NC98 1476 aa19.05■□□□□ 0.64
PFDN1-203ENST00000510217 DNAJC5Q9H3Z4 198 aa19.02■□□□□ 0.64
PFDN1-203ENST00000510217 URB2Q14146 1524 aaKnown RBP18.95■□□□□ 0.62
PFDN1-203ENST00000510217 TOPBP1Q92547 1522 aa18.78■□□□□ 0.6
PFDN1-203ENST00000510217 DNMBPQ6XZF7 1577 aa18.76■□□□□ 0.59
PFDN1-203ENST00000510217 ABCC8Q09428 1581 aa18.71■□□□□ 0.59
PFDN1-203ENST00000510217 IFT140Q96RY7 1462 aa18.7■□□□□ 0.58
PFDN1-203ENST00000510217 ZNF608Q9ULD9 1512 aaPredicted RBP18.66■□□□□ 0.58
PFDN1-203ENST00000510217 EIF4G3O43432 1585 aaKnown RBP18.63■□□□□ 0.57
PFDN1-203ENST00000510217 TARBP1Q13395 1621 aaKnown RBP18.63■□□□□ 0.57
PFDN1-203ENST00000510217 SUPT5HO00267 1087 aaKnown RBP18.62■□□□□ 0.57
PFDN1-203ENST00000510217 POLA1P09884 1462 aaPredicted RBP18.6■□□□□ 0.57
PFDN1-203ENST00000510217 CUX1P39880 1505 aa18.56■□□□□ 0.56
PFDN1-203ENST00000510217 FGD5Q6ZNL6 1462 aa18.52■□□□□ 0.56
PFDN1-203ENST00000510217 RAD54L2Q9Y4B4 1467 aa18.51■□□□□ 0.55
PFDN1-203ENST00000510217 AQRO60306 1485 aaKnown RBP eCLIP18.48■□□□□ 0.55
PFDN1-203ENST00000510217 WDR97A6NE52 1622 aa18.47■□□□□ 0.55
PFDN1-203ENST00000510217 SOGA1O94964 1423 aa18.46■□□□□ 0.55
PFDN1-203ENST00000510217 OSCARQ8IYS5 282 aa18.45■□□□□ 0.54
PFDN1-203ENST00000510217 CHD1O14646 1710 aa18.44■□□□□ 0.54
PFDN1-203ENST00000510217 TDRD9Q8NDG6 1382 aaKnown RBP18.39■□□□□ 0.53
PFDN1-203ENST00000510217 BIVM-ERCC5R4GMW8 1640 aa18.37■□□□□ 0.53
PFDN1-203ENST00000510217 SNAPC4Q5SXM2 1469 aa18.35■□□□□ 0.53
PFDN1-203ENST00000510217 PBRM1Q86U86 1689 aa18.34■□□□□ 0.53
PFDN1-203ENST00000510217 SYNJ1O43426 1573 aa18.34■□□□□ 0.53
PFDN1-203ENST00000510217 RIMBP3CA6NJZ7 1639 aa18.34■□□□□ 0.53
PFDN1-203ENST00000510217 RIMBP3BA6NNM3 1639 aa18.34■□□□□ 0.53
PFDN1-203ENST00000510217 TOP2BQ02880 1626 aa18.34■□□□□ 0.53
PFDN1-203ENST00000510217 RIMBP3Q9UFD9 1639 aa18.34■□□□□ 0.53
PFDN1-203ENST00000510217 ABCA5Q8WWZ7 1642 aa18.33■□□□□ 0.52
PFDN1-203ENST00000510217 ABCA10Q8WWZ4 1543 aa18.33■□□□□ 0.52
PFDN1-203ENST00000510217 GRIN2BQ13224 1484 aa18.31■□□□□ 0.52
PFDN1-203ENST00000510217 WRNQ14191 1432 aaPredicted RBP eCLIP18.31■□□□□ 0.52
PFDN1-203ENST00000510217 MAGI1Q96QZ7 1491 aaPredicted RBP18.3■□□□□ 0.52
PFDN1-203ENST00000510217 ARHGEF11O15085 1522 aa18.28■□□□□ 0.52
PFDN1-203ENST00000510217 TRIM41Q8WV44 630 aa18.28■□□□□ 0.52
PFDN1-203ENST00000510217 GAPVD1Q14C86 1478 aa18.27■□□□□ 0.52
PFDN1-203ENST00000510217 SYNJ2O15056 1496 aa18.23■□□□□ 0.51
PFDN1-203ENST00000510217 CLASP1Q7Z460 1538 aa18.23■□□□□ 0.51
PFDN1-203ENST00000510217 FBLN2P98095 1184 aa18.22■□□□□ 0.51
PFDN1-203ENST00000510217 ADAMTS12P58397 1594 aa18.17■□□□□ 0.5
PFDN1-203ENST00000510217 CHMP7Q8WUX9 453 aaPredicted RBP18.14■□□□□ 0.49
PFDN1-203ENST00000510217 ARAP1Q96P48 1450 aa18.14■□□□□ 0.49
PFDN1-203ENST00000510217 ERICH3Q5RHP9 1530 aa18.11■□□□□ 0.49
PFDN1-203ENST00000510217 GRIN2AQ12879 1464 aa18.09■□□□□ 0.49
PFDN1-203ENST00000510217 CEP170Q5SW79 1584 aa18.05■□□□□ 0.48
PFDN1-203ENST00000510217 PHF23Q9BUL5 403 aaPredicted RBP18.05■□□□□ 0.48
PFDN1-203ENST00000510217 FHAD1B1AJZ9 1412 aa18.05■□□□□ 0.48
PFDN1-203ENST00000510217 NUP160Q12769 1436 aa18.03■□□□□ 0.48
PFDN1-203ENST00000510217 CYB5RLQ6IPT4 315 aa18■□□□□ 0.47
PFDN1-203ENST00000510217 SHROOM2Q13796 1616 aa17.97■□□□□ 0.47
PFDN1-203ENST00000510217 ERCC6L2Q5T890 1561 aa17.95■□□□□ 0.46
PFDN1-203ENST00000510217 CUL7Q14999 1698 aa17.93■□□□□ 0.46
PFDN1-203ENST00000510217 RUSC2Q8N2Y8 1516 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms