RNA–Protein interactions for RNA: ENST00000509328.1

HOXC6-204, Transcript of homeobox C6, humanhuman

TSL 3

Gene HOXC6, Length 358 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC6-204ENST00000509328 NISCHQ9Y2I1 1504 aa48.76■■■■■ 5.4
HOXC6-204ENST00000509328 CCDC180Q9P1Z9 1646 aa43.35■■■■■ 4.53
HOXC6-204ENST00000509328 ABCC9O60706 1549 aa42.16■■■■■ 4.34
HOXC6-204ENST00000509328 RB1CC1Q8TDY2 1594 aa40.69■■■■■ 4.11
HOXC6-204ENST00000509328 NACADO15069 1562 aa40.68■■■■■ 4.1
HOXC6-204ENST00000509328 ZCCHC6Q5VYS8 1495 aaKnown RBP40.65■■■■■ 4.1
HOXC6-204ENST00000509328 DCAF8L2P0C7V8 631 aa40.62■■■■■ 4.09
HOXC6-204ENST00000509328 MYO15BQ96JP2 1530 aa40.49■■■■■ 4.07
HOXC6-204ENST00000509328 DCAF1Q9Y4B6 1507 aa40.38■■■■■ 4.06
HOXC6-204ENST00000509328 UNC13AQ9UPW8 1703 aa39.84■■■■□ 3.97
HOXC6-204ENST00000509328 SCRIBQ14160 1630 aa39.51■■■■□ 3.92
HOXC6-204ENST00000509328 BICRAQ9NZM4 1560 aa39.43■■■■□ 3.9
HOXC6-204ENST00000509328 PABPN1Q86U42 306 aaKnown RBP eCLIP39.4■■■■□ 3.9
HOXC6-204ENST00000509328 SHROOM4Q9ULL8 1493 aa39.06■■■■□ 3.84
HOXC6-204ENST00000509328 DNAJC5BQ9UF47 199 aa38.51■■■■□ 3.76
HOXC6-204ENST00000509328 EIF4G1Q04637 1599 aaKnown RBP38.38■■■■□ 3.73
HOXC6-204ENST00000509328 CC2D2AQ9P2K1 1620 aa38.2■■■■□ 3.7
HOXC6-204ENST00000509328 CECR2Q9BXF3 1484 aa37.94■■■■□ 3.66
HOXC6-204ENST00000509328 SMARCA4P51532 1647 aa37.83■■■■□ 3.65
HOXC6-204ENST00000509328 BAZ1AQ9NRL2 1556 aaPredicted RBP37.8■■■■□ 3.64
HOXC6-204ENST00000509328 MROH2BQ7Z745 1585 aa37.57■■■■□ 3.6
HOXC6-204ENST00000509328 ATAD2BQ9ULI0 1458 aa37.54■■■■□ 3.6
HOXC6-204ENST00000509328 SMARCA2P51531 1590 aa37.54■■■■□ 3.6
HOXC6-204ENST00000509328 NCAPD3P42695 1498 aa37.51■■■■□ 3.59
HOXC6-204ENST00000509328 PEG3Q9GZU2 1588 aa37.46■■■■□ 3.59
HOXC6-204ENST00000509328 HMGXB3Q12766 1538 aa37.36■■■■□ 3.57
HOXC6-204ENST00000509328 BAZ1BQ9UIG0 1483 aaKnown RBP37.26■■■■□ 3.55
HOXC6-204ENST00000509328 WIZO95785 1651 aa37.21■■■■□ 3.55
HOXC6-204ENST00000509328 RSF1Q96T23 1441 aaPredicted RBP37.19■■■■□ 3.54
HOXC6-204ENST00000509328 TOP2AP11388 1531 aaKnown RBP36.81■■■■□ 3.48
HOXC6-204ENST00000509328 NESP48681 1621 aa36.54■■■■□ 3.44
HOXC6-204ENST00000509328 LAMC3Q9Y6N6 1575 aa36.53■■■■□ 3.44
HOXC6-204ENST00000509328 CADPSQ9ULU8 1353 aa36.4■■■■□ 3.42
HOXC6-204ENST00000509328 CCDC88BA6NC98 1476 aa36.36■■■■□ 3.41
HOXC6-204ENST00000509328 ERCC6Q03468 1493 aa36.35■■■■□ 3.41
HOXC6-204ENST00000509328 SUPT5HO00267 1087 aaKnown RBP36.34■■■■□ 3.41
HOXC6-204ENST00000509328 PDS5BQ9NTI5 1447 aa36.25■■■■□ 3.39
HOXC6-204ENST00000509328 CFTRP13569 1480 aa36.24■■■■□ 3.39
HOXC6-204ENST00000509328 KIF21AQ7Z4S6 1674 aa36.19■■■■□ 3.38
HOXC6-204ENST00000509328 PRDM2Q13029 1718 aa36.11■■■■□ 3.37
HOXC6-204ENST00000509328 FANCD2Q9BXW9 1451 aa36■■■■□ 3.35
HOXC6-204ENST00000509328 THOC2Q8NI27 1593 aaKnown RBP36■■■■□ 3.35
HOXC6-204ENST00000509328 CEP164Q9UPV0 1460 aa35.95■■■■□ 3.35
HOXC6-204ENST00000509328 CUX2O14529 1486 aa35.92■■■■□ 3.34
HOXC6-204ENST00000509328 MRC2Q9UBG0 1479 aa35.86■■■■□ 3.33
HOXC6-204ENST00000509328 WDR62O43379 1518 aa35.75■■■■□ 3.31
HOXC6-204ENST00000509328 URB2Q14146 1524 aaKnown RBP35.63■■■■□ 3.29
HOXC6-204ENST00000509328 ABCC8Q09428 1581 aa35.48■■■■□ 3.27
HOXC6-204ENST00000509328 TOPBP1Q92547 1522 aa35.45■■■■□ 3.27
HOXC6-204ENST00000509328 DNMBPQ6XZF7 1577 aa35.45■■■■□ 3.27
HOXC6-204ENST00000509328 CUX1P39880 1505 aa35.24■■■■□ 3.23
HOXC6-204ENST00000509328 IFT140Q96RY7 1462 aa35.19■■■■□ 3.22
HOXC6-204ENST00000509328 POLA1P09884 1462 aaPredicted RBP35.15■■■■□ 3.22
HOXC6-204ENST00000509328 FGD5Q6ZNL6 1462 aa35.09■■■■□ 3.21
HOXC6-204ENST00000509328 TARBP1Q13395 1621 aaKnown RBP35.08■■■■□ 3.21
HOXC6-204ENST00000509328 WRNQ14191 1432 aaPredicted RBP eCLIP35.07■■■■□ 3.21
HOXC6-204ENST00000509328 BIVM-ERCC5R4GMW8 1640 aa35.03■■■■□ 3.2
HOXC6-204ENST00000509328 TOP2BQ02880 1626 aa35.02■■■■□ 3.2
HOXC6-204ENST00000509328 SOGA1O94964 1423 aa35.01■■■■□ 3.2
HOXC6-204ENST00000509328 SYNJ1O43426 1573 aa35■■■■□ 3.19
HOXC6-204ENST00000509328 ZNF608Q9ULD9 1512 aaPredicted RBP34.99■■■■□ 3.19
HOXC6-204ENST00000509328 RAD54L2Q9Y4B4 1467 aa34.98■■■■□ 3.19
HOXC6-204ENST00000509328 EIF4G3O43432 1585 aaKnown RBP34.91■■■■□ 3.18
HOXC6-204ENST00000509328 WDR97A6NE52 1622 aa34.85■■■■□ 3.17
HOXC6-204ENST00000509328 AQRO60306 1485 aaKnown RBP eCLIP34.81■■■■□ 3.16
HOXC6-204ENST00000509328 TDRD9Q8NDG6 1382 aaKnown RBP34.77■■■■□ 3.16
HOXC6-204ENST00000509328 ABCA10Q8WWZ4 1543 aa34.77■■■■□ 3.16
HOXC6-204ENST00000509328 ABCA5Q8WWZ7 1642 aa34.65■■■■□ 3.14
HOXC6-204ENST00000509328 GAPVD1Q14C86 1478 aa34.62■■■■□ 3.13
HOXC6-204ENST00000509328 PBRM1Q86U86 1689 aa34.6■■■■□ 3.13
HOXC6-204ENST00000509328 GRIN2BQ13224 1484 aa34.59■■■■□ 3.13
HOXC6-204ENST00000509328 DNAJC5Q9H3Z4 198 aa34.59■■■■□ 3.13
HOXC6-204ENST00000509328 SNAPC4Q5SXM2 1469 aa34.52■■■■□ 3.12
HOXC6-204ENST00000509328 MAGI1Q96QZ7 1491 aaPredicted RBP34.5■■■■□ 3.11
HOXC6-204ENST00000509328 CHD1O14646 1710 aa34.48■■■■□ 3.11
HOXC6-204ENST00000509328 OSCARQ8IYS5 282 aa34.44■■■■□ 3.1
HOXC6-204ENST00000509328 ERICH3Q5RHP9 1530 aa34.38■■■■□ 3.09
HOXC6-204ENST00000509328 SYNJ2O15056 1496 aa34.35■■■■□ 3.09
HOXC6-204ENST00000509328 FBLN2P98095 1184 aa34.35■■■■□ 3.09
HOXC6-204ENST00000509328 TRIM41Q8WV44 630 aa34.34■■■■□ 3.09
HOXC6-204ENST00000509328 KIF27Q86VH2 1401 aa34.33■■■■□ 3.09
HOXC6-204ENST00000509328 CHMP7Q8WUX9 453 aaPredicted RBP34.3■■■■□ 3.08
HOXC6-204ENST00000509328 ADAMTS12P58397 1594 aa34.3■■■■□ 3.08
HOXC6-204ENST00000509328 FHAD1B1AJZ9 1412 aa34.22■■■■□ 3.07
HOXC6-204ENST00000509328 IGF1RP08069 1367 aa34.15■■■■□ 3.06
HOXC6-204ENST00000509328 GRIN2AQ12879 1464 aa34.14■■■■□ 3.06
HOXC6-204ENST00000509328 CUL7Q14999 1698 aa34.13■■■■□ 3.05
HOXC6-204ENST00000509328 CLASP1Q7Z460 1538 aa34.06■■■■□ 3.04
HOXC6-204ENST00000509328 RUSC2Q8N2Y8 1516 aa34.04■■■■□ 3.04
HOXC6-204ENST00000509328 CHIC1Q5VXU3 224 aa34.02■■■■□ 3.04
HOXC6-204ENST00000509328 CEP170Q5SW79 1584 aa33.98■■■■□ 3.03
HOXC6-204ENST00000509328 NUP160Q12769 1436 aa33.98■■■■□ 3.03
HOXC6-204ENST00000509328 CARMIL1Q5VZK9 1371 aa33.97■■■■□ 3.03
HOXC6-204ENST00000509328 RIMBP3CA6NJZ7 1639 aa33.91■■■■□ 3.02
HOXC6-204ENST00000509328 RIMBP3BA6NNM3 1639 aa33.91■■■■□ 3.02
HOXC6-204ENST00000509328 RIMBP3Q9UFD9 1639 aa33.91■■■■□ 3.02
HOXC6-204ENST00000509328 ARHGEF11O15085 1522 aa33.89■■■■□ 3.02
HOXC6-204ENST00000509328 EEA1Q15075 1411 aa33.8■■■■□ 3
HOXC6-204ENST00000509328 RAPGEF2Q9Y4G8 1499 aa33.8■■■■□ 3
HOXC6-204ENST00000509328 SHROOM2Q13796 1616 aa33.75■■■□□ 2.99
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms