RNA–Protein interactions for RNA: ENST00000509102.5

UBE3D-207, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,246 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-207ENST00000509102 NISCHQ9Y2I1 1504 aa45.67■■■■■ 4.9
UBE3D-207ENST00000509102 CCDC180Q9P1Z9 1646 aa40.79■■■■■ 4.12
UBE3D-207ENST00000509102 ABCC9O60706 1549 aa40.26■■■■■ 4.04
UBE3D-207ENST00000509102 RB1CC1Q8TDY2 1594 aa38.61■■■■□ 3.77
UBE3D-207ENST00000509102 NACADO15069 1562 aa38.47■■■■□ 3.75
UBE3D-207ENST00000509102 DCAF8L2P0C7V8 631 aa38.43■■■■□ 3.74
UBE3D-207ENST00000509102 MYO15BQ96JP2 1530 aa38.1■■■■□ 3.69
UBE3D-207ENST00000509102 ZCCHC6Q5VYS8 1495 aaKnown RBP37.96■■■■□ 3.67
UBE3D-207ENST00000509102 DCAF1Q9Y4B6 1507 aa37.79■■■■□ 3.64
UBE3D-207ENST00000509102 UNC13AQ9UPW8 1703 aa37.6■■■■□ 3.61
UBE3D-207ENST00000509102 PABPN1Q86U42 306 aaKnown RBP eCLIP37.56■■■■□ 3.6
UBE3D-207ENST00000509102 BICRAQ9NZM4 1560 aa37.33■■■■□ 3.57
UBE3D-207ENST00000509102 SCRIBQ14160 1630 aa37.18■■■■□ 3.54
UBE3D-207ENST00000509102 DNAJC5BQ9UF47 199 aa37.18■■■■□ 3.54
UBE3D-207ENST00000509102 SHROOM4Q9ULL8 1493 aa37.06■■■■□ 3.52
UBE3D-207ENST00000509102 EIF4G1Q04637 1599 aaKnown RBP36.45■■■■□ 3.43
UBE3D-207ENST00000509102 CC2D2AQ9P2K1 1620 aa36.38■■■■□ 3.41
UBE3D-207ENST00000509102 CECR2Q9BXF3 1484 aa36.24■■■■□ 3.39
UBE3D-207ENST00000509102 SMARCA4P51532 1647 aa35.52■■■■□ 3.28
UBE3D-207ENST00000509102 BAZ1AQ9NRL2 1556 aaPredicted RBP35.48■■■■□ 3.27
UBE3D-207ENST00000509102 NCAPD3P42695 1498 aa35.47■■■■□ 3.27
UBE3D-207ENST00000509102 SMARCA2P51531 1590 aa35.42■■■■□ 3.26
UBE3D-207ENST00000509102 ATAD2BQ9ULI0 1458 aa35.42■■■■□ 3.26
UBE3D-207ENST00000509102 HMGXB3Q12766 1538 aa35.27■■■■□ 3.24
UBE3D-207ENST00000509102 BAZ1BQ9UIG0 1483 aaKnown RBP35.17■■■■□ 3.22
UBE3D-207ENST00000509102 PEG3Q9GZU2 1588 aa35.17■■■■□ 3.22
UBE3D-207ENST00000509102 MROH2BQ7Z745 1585 aa35.16■■■■□ 3.22
UBE3D-207ENST00000509102 ERCC6Q03468 1493 aa34.83■■■■□ 3.17
UBE3D-207ENST00000509102 WIZO95785 1651 aa34.76■■■■□ 3.16
UBE3D-207ENST00000509102 NESP48681 1621 aa34.68■■■■□ 3.14
UBE3D-207ENST00000509102 RSF1Q96T23 1441 aaPredicted RBP34.64■■■■□ 3.14
UBE3D-207ENST00000509102 LAMC3Q9Y6N6 1575 aa34.62■■■■□ 3.13
UBE3D-207ENST00000509102 CUX2O14529 1486 aa34.54■■■■□ 3.12
UBE3D-207ENST00000509102 PDS5BQ9NTI5 1447 aa34.46■■■■□ 3.11
UBE3D-207ENST00000509102 CADPSQ9ULU8 1353 aa34.44■■■■□ 3.1
UBE3D-207ENST00000509102 TOP2AP11388 1531 aaKnown RBP34.42■■■■□ 3.1
UBE3D-207ENST00000509102 KIF21AQ7Z4S6 1674 aa34.28■■■■□ 3.08
UBE3D-207ENST00000509102 THOC2Q8NI27 1593 aaKnown RBP34.24■■■■□ 3.07
UBE3D-207ENST00000509102 CFTRP13569 1480 aa34.14■■■■□ 3.06
UBE3D-207ENST00000509102 MRC2Q9UBG0 1479 aa34.07■■■■□ 3.05
UBE3D-207ENST00000509102 CEP164Q9UPV0 1460 aa34.07■■■■□ 3.04
UBE3D-207ENST00000509102 AEBP2Q6ZN18 517 aaPredicted RBP34.05■■■■□ 3.04
UBE3D-207ENST00000509102 FANCD2Q9BXW9 1451 aa34.05■■■■□ 3.04
UBE3D-207ENST00000509102 CCDC88BA6NC98 1476 aa34■■■■□ 3.03
UBE3D-207ENST00000509102 WDR62O43379 1518 aa33.94■■■■□ 3.02
UBE3D-207ENST00000509102 DNAJC5Q9H3Z4 198 aa33.88■■■■□ 3.01
UBE3D-207ENST00000509102 PRDM2Q13029 1718 aa33.84■■■■□ 3.01
UBE3D-207ENST00000509102 URB2Q14146 1524 aaKnown RBP33.68■■■□□ 2.98
UBE3D-207ENST00000509102 SUPT5HO00267 1087 aaKnown RBP33.58■■■□□ 2.97
UBE3D-207ENST00000509102 ABCC8Q09428 1581 aa33.5■■■□□ 2.95
UBE3D-207ENST00000509102 TOPBP1Q92547 1522 aa33.43■■■□□ 2.94
UBE3D-207ENST00000509102 DNMBPQ6XZF7 1577 aa33.38■■■□□ 2.93
UBE3D-207ENST00000509102 IFT140Q96RY7 1462 aa33.37■■■□□ 2.93
UBE3D-207ENST00000509102 ZNF608Q9ULD9 1512 aaPredicted RBP33.17■■■□□ 2.9
UBE3D-207ENST00000509102 POLA1P09884 1462 aaPredicted RBP33.12■■■□□ 2.89
UBE3D-207ENST00000509102 OSCARQ8IYS5 282 aa33.08■■■□□ 2.89
UBE3D-207ENST00000509102 TARBP1Q13395 1621 aaKnown RBP33.06■■■□□ 2.88
UBE3D-207ENST00000509102 EIF4G3O43432 1585 aaKnown RBP33.05■■■□□ 2.88
UBE3D-207ENST00000509102 SOGA1O94964 1423 aa33.02■■■□□ 2.88
UBE3D-207ENST00000509102 CUX1P39880 1505 aa33.02■■■□□ 2.88
UBE3D-207ENST00000509102 FGD5Q6ZNL6 1462 aa33■■■□□ 2.87
UBE3D-207ENST00000509102 RAD54L2Q9Y4B4 1467 aa32.97■■■□□ 2.87
UBE3D-207ENST00000509102 AQRO60306 1485 aaKnown RBP eCLIP32.96■■■□□ 2.87
UBE3D-207ENST00000509102 WDR97A6NE52 1622 aa32.88■■■□□ 2.85
UBE3D-207ENST00000509102 TDRD9Q8NDG6 1382 aaKnown RBP32.85■■■□□ 2.85
UBE3D-207ENST00000509102 FBLN2P98095 1184 aa32.75■■■□□ 2.83
UBE3D-207ENST00000509102 WRNQ14191 1432 aaPredicted RBP eCLIP32.74■■■□□ 2.83
UBE3D-207ENST00000509102 GRIN2BQ13224 1484 aa32.69■■■□□ 2.82
UBE3D-207ENST00000509102 CHD1O14646 1710 aa32.68■■■□□ 2.82
UBE3D-207ENST00000509102 TOP2BQ02880 1626 aa32.67■■■□□ 2.82
UBE3D-207ENST00000509102 TRIM41Q8WV44 630 aa32.67■■■□□ 2.82
UBE3D-207ENST00000509102 SNAPC4Q5SXM2 1469 aa32.67■■■□□ 2.82
UBE3D-207ENST00000509102 ABCA10Q8WWZ4 1543 aa32.67■■■□□ 2.82
UBE3D-207ENST00000509102 BIVM-ERCC5R4GMW8 1640 aa32.66■■■□□ 2.82
UBE3D-207ENST00000509102 MAGI1Q96QZ7 1491 aaPredicted RBP32.65■■■□□ 2.82
UBE3D-207ENST00000509102 GAPVD1Q14C86 1478 aa32.64■■■□□ 2.82
UBE3D-207ENST00000509102 CHIC1Q5VXU3 224 aa32.63■■■□□ 2.81
UBE3D-207ENST00000509102 SYNJ1O43426 1573 aa32.61■■■□□ 2.81
UBE3D-207ENST00000509102 CHMP7Q8WUX9 453 aaPredicted RBP32.6■■■□□ 2.81
UBE3D-207ENST00000509102 PBRM1Q86U86 1689 aa32.55■■■□□ 2.8
UBE3D-207ENST00000509102 ABCA5Q8WWZ7 1642 aa32.54■■■□□ 2.8
UBE3D-207ENST00000509102 SYNJ2O15056 1496 aa32.52■■■□□ 2.8
UBE3D-207ENST00000509102 RIMBP3CA6NJZ7 1639 aa32.5■■■□□ 2.79
UBE3D-207ENST00000509102 RIMBP3BA6NNM3 1639 aa32.5■■■□□ 2.79
UBE3D-207ENST00000509102 RIMBP3Q9UFD9 1639 aa32.5■■■□□ 2.79
UBE3D-207ENST00000509102 ARHGEF11O15085 1522 aa32.48■■■□□ 2.79
UBE3D-207ENST00000509102 CLASP1Q7Z460 1538 aa32.32■■■□□ 2.76
UBE3D-207ENST00000509102 ERICH3Q5RHP9 1530 aa32.3■■■□□ 2.76
UBE3D-207ENST00000509102 ADAMTS12P58397 1594 aa32.28■■■□□ 2.76
UBE3D-207ENST00000509102 FHAD1B1AJZ9 1412 aa32.26■■■□□ 2.75
UBE3D-207ENST00000509102 GRIN2AQ12879 1464 aa32.25■■■□□ 2.75
UBE3D-207ENST00000509102 CYB5RLQ6IPT4 315 aa32.24■■■□□ 2.75
UBE3D-207ENST00000509102 ARAP1Q96P48 1450 aa32.16■■■□□ 2.74
UBE3D-207ENST00000509102 KIF27Q86VH2 1401 aa32.12■■■□□ 2.73
UBE3D-207ENST00000509102 NUP160Q12769 1436 aa32.09■■■□□ 2.73
UBE3D-207ENST00000509102 CEP170Q5SW79 1584 aa32.06■■■□□ 2.72
UBE3D-207ENST00000509102 IGF1RP08069 1367 aa31.95■■■□□ 2.71
UBE3D-207ENST00000509102 CUL7Q14999 1698 aa31.95■■■□□ 2.7
UBE3D-207ENST00000509102 SHROOM2Q13796 1616 aa31.87■■■□□ 2.69
UBE3D-207ENST00000509102 JPH4Q96JJ6 628 aa31.81■■■□□ 2.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms