RNA–Protein interactions for RNA: ENST00000508387.5

NR1I3-225, Transcript of nuclear receptor subfamily 1 group I member 3, humanhuman

TSL 1 (best) BASIC

Gene NR1I3, Length 634 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1I3-225ENST00000508387 NISCHQ9Y2I1 1504 aa31.96■■■□□ 2.71
NR1I3-225ENST00000508387 CCDC180Q9P1Z9 1646 aa28.57■■■□□ 2.16
NR1I3-225ENST00000508387 ABCC9O60706 1549 aa28.36■■■□□ 2.13
NR1I3-225ENST00000508387 RB1CC1Q8TDY2 1594 aa27.03■■□□□ 1.92
NR1I3-225ENST00000508387 NACADO15069 1562 aa26.88■■□□□ 1.89
NR1I3-225ENST00000508387 DCAF8L2P0C7V8 631 aa26.81■■□□□ 1.88
NR1I3-225ENST00000508387 ZCCHC6Q5VYS8 1495 aaKnown RBP26.58■■□□□ 1.85
NR1I3-225ENST00000508387 UNC13AQ9UPW8 1703 aa26.58■■□□□ 1.85
NR1I3-225ENST00000508387 MYO15BQ96JP2 1530 aa26.56■■□□□ 1.84
NR1I3-225ENST00000508387 PABPN1Q86U42 306 aaKnown RBP eCLIP26.42■■□□□ 1.82
NR1I3-225ENST00000508387 DNAJC5BQ9UF47 199 aa26.36■■□□□ 1.81
NR1I3-225ENST00000508387 DCAF1Q9Y4B6 1507 aa26.35■■□□□ 1.81
NR1I3-225ENST00000508387 BICRAQ9NZM4 1560 aa26.33■■□□□ 1.81
NR1I3-225ENST00000508387 SCRIBQ14160 1630 aa26.15■■□□□ 1.78
NR1I3-225ENST00000508387 SHROOM4Q9ULL8 1493 aa25.84■■□□□ 1.73
NR1I3-225ENST00000508387 CC2D2AQ9P2K1 1620 aa25.63■■□□□ 1.69
NR1I3-225ENST00000508387 EIF4G1Q04637 1599 aaKnown RBP25.63■■□□□ 1.69
NR1I3-225ENST00000508387 CECR2Q9BXF3 1484 aa25.47■■□□□ 1.67
NR1I3-225ENST00000508387 SMARCA4P51532 1647 aa24.92■■□□□ 1.58
NR1I3-225ENST00000508387 ATAD2BQ9ULI0 1458 aa24.83■■□□□ 1.57
NR1I3-225ENST00000508387 NCAPD3P42695 1498 aa24.81■■□□□ 1.56
NR1I3-225ENST00000508387 BAZ1AQ9NRL2 1556 aaPredicted RBP24.77■■□□□ 1.56
NR1I3-225ENST00000508387 SMARCA2P51531 1590 aa24.73■■□□□ 1.55
NR1I3-225ENST00000508387 HMGXB3Q12766 1538 aa24.7■■□□□ 1.54
NR1I3-225ENST00000508387 MROH2BQ7Z745 1585 aa24.69■■□□□ 1.54
NR1I3-225ENST00000508387 PEG3Q9GZU2 1588 aa24.63■■□□□ 1.53
NR1I3-225ENST00000508387 BAZ1BQ9UIG0 1483 aaKnown RBP24.6■■□□□ 1.53
NR1I3-225ENST00000508387 NESP48681 1621 aa24.47■■□□□ 1.51
NR1I3-225ENST00000508387 WIZO95785 1651 aa24.43■■□□□ 1.5
NR1I3-225ENST00000508387 ERCC6Q03468 1493 aa24.39■■□□□ 1.5
NR1I3-225ENST00000508387 LAMC3Q9Y6N6 1575 aa24.25■■□□□ 1.47
NR1I3-225ENST00000508387 CUX2O14529 1486 aa24.23■■□□□ 1.47
NR1I3-225ENST00000508387 RSF1Q96T23 1441 aaPredicted RBP24.22■■□□□ 1.47
NR1I3-225ENST00000508387 KIF21AQ7Z4S6 1674 aa24.19■■□□□ 1.46
NR1I3-225ENST00000508387 THOC2Q8NI27 1593 aaKnown RBP24.18■■□□□ 1.46
NR1I3-225ENST00000508387 TOP2AP11388 1531 aaKnown RBP24.09■■□□□ 1.45
NR1I3-225ENST00000508387 CADPSQ9ULU8 1353 aa24.06■■□□□ 1.44
NR1I3-225ENST00000508387 PDS5BQ9NTI5 1447 aa24.02■■□□□ 1.44
NR1I3-225ENST00000508387 MRC2Q9UBG0 1479 aa23.88■■□□□ 1.41
NR1I3-225ENST00000508387 CFTRP13569 1480 aa23.87■■□□□ 1.41
NR1I3-225ENST00000508387 DNAJC5Q9H3Z4 198 aa23.87■■□□□ 1.41
NR1I3-225ENST00000508387 FANCD2Q9BXW9 1451 aa23.85■■□□□ 1.41
NR1I3-225ENST00000508387 WDR62O43379 1518 aa23.84■■□□□ 1.41
NR1I3-225ENST00000508387 CEP164Q9UPV0 1460 aa23.84■■□□□ 1.41
NR1I3-225ENST00000508387 CCDC88BA6NC98 1476 aa23.81■■□□□ 1.4
NR1I3-225ENST00000508387 PRDM2Q13029 1718 aa23.75■■□□□ 1.39
NR1I3-225ENST00000508387 URB2Q14146 1524 aaKnown RBP23.69■■□□□ 1.38
NR1I3-225ENST00000508387 TOPBP1Q92547 1522 aa23.45■■□□□ 1.34
NR1I3-225ENST00000508387 DNMBPQ6XZF7 1577 aa23.38■■□□□ 1.33
NR1I3-225ENST00000508387 ZNF608Q9ULD9 1512 aaPredicted RBP23.36■■□□□ 1.33
NR1I3-225ENST00000508387 SUPT5HO00267 1087 aaKnown RBP23.34■■□□□ 1.33
NR1I3-225ENST00000508387 IFT140Q96RY7 1462 aa23.33■■□□□ 1.33
NR1I3-225ENST00000508387 ABCC8Q09428 1581 aa23.28■■□□□ 1.32
NR1I3-225ENST00000508387 EIF4G3O43432 1585 aaKnown RBP23.27■■□□□ 1.32
NR1I3-225ENST00000508387 TARBP1Q13395 1621 aaKnown RBP23.25■■□□□ 1.31
NR1I3-225ENST00000508387 POLA1P09884 1462 aaPredicted RBP23.23■■□□□ 1.31
NR1I3-225ENST00000508387 CUX1P39880 1505 aa23.18■■□□□ 1.3
NR1I3-225ENST00000508387 RAD54L2Q9Y4B4 1467 aa23.17■■□□□ 1.3
NR1I3-225ENST00000508387 AQRO60306 1485 aaKnown RBP eCLIP23.15■■□□□ 1.3
NR1I3-225ENST00000508387 FGD5Q6ZNL6 1462 aa23.13■■□□□ 1.29
NR1I3-225ENST00000508387 OSCARQ8IYS5 282 aa23.09■■□□□ 1.29
NR1I3-225ENST00000508387 SOGA1O94964 1423 aa23.07■■□□□ 1.28
NR1I3-225ENST00000508387 CHD1O14646 1710 aa23.05■■□□□ 1.28
NR1I3-225ENST00000508387 TRIM41Q8WV44 630 aa23.03■■□□□ 1.28
NR1I3-225ENST00000508387 TDRD9Q8NDG6 1382 aaKnown RBP23.02■■□□□ 1.28
NR1I3-225ENST00000508387 WDR97A6NE52 1622 aa23.02■■□□□ 1.28
NR1I3-225ENST00000508387 RIMBP3CA6NJZ7 1639 aa22.95■■□□□ 1.26
NR1I3-225ENST00000508387 RIMBP3BA6NNM3 1639 aa22.95■■□□□ 1.26
NR1I3-225ENST00000508387 RIMBP3Q9UFD9 1639 aa22.95■■□□□ 1.26
NR1I3-225ENST00000508387 SNAPC4Q5SXM2 1469 aa22.94■■□□□ 1.26
NR1I3-225ENST00000508387 SYNJ1O43426 1573 aa22.9■■□□□ 1.26
NR1I3-225ENST00000508387 PBRM1Q86U86 1689 aa22.89■■□□□ 1.25
NR1I3-225ENST00000508387 BIVM-ERCC5R4GMW8 1640 aa22.87■■□□□ 1.25
NR1I3-225ENST00000508387 FBLN2P98095 1184 aa22.87■■□□□ 1.25
NR1I3-225ENST00000508387 ARHGEF11O15085 1522 aa22.87■■□□□ 1.25
NR1I3-225ENST00000508387 ABCA5Q8WWZ7 1642 aa22.86■■□□□ 1.25
NR1I3-225ENST00000508387 ABCA10Q8WWZ4 1543 aa22.85■■□□□ 1.25
NR1I3-225ENST00000508387 TOP2BQ02880 1626 aa22.84■■□□□ 1.25
NR1I3-225ENST00000508387 GRIN2BQ13224 1484 aa22.84■■□□□ 1.25
NR1I3-225ENST00000508387 WRNQ14191 1432 aaPredicted RBP eCLIP22.82■■□□□ 1.24
NR1I3-225ENST00000508387 GAPVD1Q14C86 1478 aa22.81■■□□□ 1.24
NR1I3-225ENST00000508387 MAGI1Q96QZ7 1491 aaPredicted RBP22.81■■□□□ 1.24
NR1I3-225ENST00000508387 CLASP1Q7Z460 1538 aa22.75■■□□□ 1.23
NR1I3-225ENST00000508387 SYNJ2O15056 1496 aa22.74■■□□□ 1.23
NR1I3-225ENST00000508387 CHMP7Q8WUX9 453 aaPredicted RBP22.71■■□□□ 1.23
NR1I3-225ENST00000508387 ARAP1Q96P48 1450 aa22.69■■□□□ 1.22
NR1I3-225ENST00000508387 ADAMTS12P58397 1594 aa22.67■■□□□ 1.22
NR1I3-225ENST00000508387 CYB5RLQ6IPT4 315 aa22.61■■□□□ 1.21
NR1I3-225ENST00000508387 GRIN2AQ12879 1464 aa22.59■■□□□ 1.21
NR1I3-225ENST00000508387 CEP170Q5SW79 1584 aa22.56■■□□□ 1.2
NR1I3-225ENST00000508387 ERICH3Q5RHP9 1530 aa22.55■■□□□ 1.2
NR1I3-225ENST00000508387 FHAD1B1AJZ9 1412 aa22.51■■□□□ 1.19
NR1I3-225ENST00000508387 ERCC6L2Q5T890 1561 aa22.5■■□□□ 1.19
NR1I3-225ENST00000508387 NUP160Q12769 1436 aa22.48■■□□□ 1.19
NR1I3-225ENST00000508387 SHROOM2Q13796 1616 aa22.4■■□□□ 1.18
NR1I3-225ENST00000508387 RUSC2Q8N2Y8 1516 aa22.35■■□□□ 1.17
NR1I3-225ENST00000508387 KIF27Q86VH2 1401 aa22.33■■□□□ 1.17
NR1I3-225ENST00000508387 IGF1RP08069 1367 aa22.31■■□□□ 1.16
NR1I3-225ENST00000508387 CUL7Q14999 1698 aa22.3■■□□□ 1.16
NR1I3-225ENST00000508387 TRHP20396 242 aaPredicted RBP22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 159.9 ms