RNA–Protein interactions for RNA: ENST00000508290.5

SFXN1-209, Transcript of sideroflexin 1, humanhuman

TSL 4

Gene SFXN1, Length 592 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFXN1-209ENST00000508290 NISCHQ9Y2I1 1504 aa48.58■■■■■ 5.37
SFXN1-209ENST00000508290 CCDC180Q9P1Z9 1646 aa43.35■■■■■ 4.53
SFXN1-209ENST00000508290 ABCC9O60706 1549 aa42.46■■■■■ 4.39
SFXN1-209ENST00000508290 RB1CC1Q8TDY2 1594 aa40.9■■■■■ 4.14
SFXN1-209ENST00000508290 NACADO15069 1562 aa40.82■■■■■ 4.13
SFXN1-209ENST00000508290 MYO15BQ96JP2 1530 aa40.6■■■■■ 4.09
SFXN1-209ENST00000508290 DCAF8L2P0C7V8 631 aa40.55■■■■■ 4.08
SFXN1-209ENST00000508290 ZCCHC6Q5VYS8 1495 aaKnown RBP40.45■■■■■ 4.07
SFXN1-209ENST00000508290 DCAF1Q9Y4B6 1507 aa40.31■■■■■ 4.04
SFXN1-209ENST00000508290 UNC13AQ9UPW8 1703 aa39.76■■■■□ 3.96
SFXN1-209ENST00000508290 PABPN1Q86U42 306 aaKnown RBP eCLIP39.59■■■■□ 3.93
SFXN1-209ENST00000508290 BICRAQ9NZM4 1560 aa39.55■■■■□ 3.92
SFXN1-209ENST00000508290 SHROOM4Q9ULL8 1493 aa39.39■■■■□ 3.9
SFXN1-209ENST00000508290 SCRIBQ14160 1630 aa39.38■■■■□ 3.89
SFXN1-209ENST00000508290 DNAJC5BQ9UF47 199 aa39.06■■■■□ 3.84
SFXN1-209ENST00000508290 EIF4G1Q04637 1599 aaKnown RBP38.57■■■■□ 3.77
SFXN1-209ENST00000508290 CC2D2AQ9P2K1 1620 aa38.43■■■■□ 3.74
SFXN1-209ENST00000508290 CECR2Q9BXF3 1484 aa38.25■■■■□ 3.71
SFXN1-209ENST00000508290 BAZ1AQ9NRL2 1556 aaPredicted RBP37.73■■■■□ 3.63
SFXN1-209ENST00000508290 SMARCA4P51532 1647 aa37.72■■■■□ 3.63
SFXN1-209ENST00000508290 NCAPD3P42695 1498 aa37.66■■■■□ 3.62
SFXN1-209ENST00000508290 SMARCA2P51531 1590 aa37.6■■■■□ 3.61
SFXN1-209ENST00000508290 ATAD2BQ9ULI0 1458 aa37.58■■■■□ 3.61
SFXN1-209ENST00000508290 HMGXB3Q12766 1538 aa37.46■■■■□ 3.59
SFXN1-209ENST00000508290 PEG3Q9GZU2 1588 aa37.44■■■■□ 3.58
SFXN1-209ENST00000508290 MROH2BQ7Z745 1585 aa37.36■■■■□ 3.57
SFXN1-209ENST00000508290 BAZ1BQ9UIG0 1483 aaKnown RBP37.28■■■■□ 3.56
SFXN1-209ENST00000508290 RSF1Q96T23 1441 aaPredicted RBP36.91■■■■□ 3.5
SFXN1-209ENST00000508290 WIZO95785 1651 aa36.9■■■■□ 3.5
SFXN1-209ENST00000508290 ERCC6Q03468 1493 aa36.7■■■■□ 3.47
SFXN1-209ENST00000508290 LAMC3Q9Y6N6 1575 aa36.7■■■■□ 3.46
SFXN1-209ENST00000508290 TOP2AP11388 1531 aaKnown RBP36.64■■■■□ 3.46
SFXN1-209ENST00000508290 NESP48681 1621 aa36.63■■■■□ 3.45
SFXN1-209ENST00000508290 CADPSQ9ULU8 1353 aa36.53■■■■□ 3.44
SFXN1-209ENST00000508290 PDS5BQ9NTI5 1447 aa36.49■■■■□ 3.43
SFXN1-209ENST00000508290 CUX2O14529 1486 aa36.47■■■■□ 3.43
SFXN1-209ENST00000508290 CFTRP13569 1480 aa36.27■■■■□ 3.4
SFXN1-209ENST00000508290 THOC2Q8NI27 1593 aaKnown RBP36.21■■■■□ 3.39
SFXN1-209ENST00000508290 KIF21AQ7Z4S6 1674 aa36.2■■■■□ 3.39
SFXN1-209ENST00000508290 CCDC88BA6NC98 1476 aa36.14■■■■□ 3.38
SFXN1-209ENST00000508290 CEP164Q9UPV0 1460 aa36.08■■■■□ 3.37
SFXN1-209ENST00000508290 FANCD2Q9BXW9 1451 aa36.07■■■■□ 3.37
SFXN1-209ENST00000508290 MRC2Q9UBG0 1479 aa36.07■■■■□ 3.37
SFXN1-209ENST00000508290 WDR62O43379 1518 aa35.96■■■■□ 3.35
SFXN1-209ENST00000508290 PRDM2Q13029 1718 aa35.91■■■■□ 3.34
SFXN1-209ENST00000508290 SUPT5HO00267 1087 aaKnown RBP35.71■■■■□ 3.31
SFXN1-209ENST00000508290 URB2Q14146 1524 aaKnown RBP35.67■■■■□ 3.3
SFXN1-209ENST00000508290 ABCC8Q09428 1581 aa35.59■■■■□ 3.29
SFXN1-209ENST00000508290 DNAJC5Q9H3Z4 198 aa35.51■■■■□ 3.28
SFXN1-209ENST00000508290 TOPBP1Q92547 1522 aa35.46■■■■□ 3.27
SFXN1-209ENST00000508290 DNMBPQ6XZF7 1577 aa35.43■■■■□ 3.26
SFXN1-209ENST00000508290 IFT140Q96RY7 1462 aa35.36■■■■□ 3.25
SFXN1-209ENST00000508290 POLA1P09884 1462 aaPredicted RBP35.15■■■■□ 3.22
SFXN1-209ENST00000508290 CUX1P39880 1505 aa35.07■■■■□ 3.21
SFXN1-209ENST00000508290 ZNF608Q9ULD9 1512 aaPredicted RBP35.07■■■■□ 3.21
SFXN1-209ENST00000508290 TARBP1Q13395 1621 aaKnown RBP35.07■■■■□ 3.21
SFXN1-209ENST00000508290 SOGA1O94964 1423 aa35.02■■■■□ 3.2
SFXN1-209ENST00000508290 FGD5Q6ZNL6 1462 aa35.02■■■■□ 3.2
SFXN1-209ENST00000508290 EIF4G3O43432 1585 aaKnown RBP34.99■■■■□ 3.19
SFXN1-209ENST00000508290 WDR97A6NE52 1622 aa34.96■■■■□ 3.19
SFXN1-209ENST00000508290 RAD54L2Q9Y4B4 1467 aa34.91■■■■□ 3.18
SFXN1-209ENST00000508290 AQRO60306 1485 aaKnown RBP eCLIP34.87■■■■□ 3.172e-6■■■■■ 29.6
SFXN1-209ENST00000508290 OSCARQ8IYS5 282 aa34.87■■■■□ 3.17
SFXN1-209ENST00000508290 WRNQ14191 1432 aaPredicted RBP eCLIP34.85■■■■□ 3.17
SFXN1-209ENST00000508290 TOP2BQ02880 1626 aa34.78■■■■□ 3.16
SFXN1-209ENST00000508290 TDRD9Q8NDG6 1382 aaKnown RBP34.78■■■■□ 3.16
SFXN1-209ENST00000508290 BIVM-ERCC5R4GMW8 1640 aa34.77■■■■□ 3.16
SFXN1-209ENST00000508290 ABCA10Q8WWZ4 1543 aa34.73■■■■□ 3.15
SFXN1-209ENST00000508290 GRIN2BQ13224 1484 aa34.68■■■■□ 3.14
SFXN1-209ENST00000508290 SYNJ1O43426 1573 aa34.67■■■■□ 3.14
SFXN1-209ENST00000508290 MAGI1Q96QZ7 1491 aaPredicted RBP34.64■■■■□ 3.14
SFXN1-209ENST00000508290 GAPVD1Q14C86 1478 aa34.61■■■■□ 3.13
SFXN1-209ENST00000508290 SNAPC4Q5SXM2 1469 aa34.58■■■■□ 3.13
SFXN1-209ENST00000508290 ABCA5Q8WWZ7 1642 aa34.57■■■■□ 3.12
SFXN1-209ENST00000508290 CHD1O14646 1710 aa34.51■■■■□ 3.12
SFXN1-209ENST00000508290 FBLN2P98095 1184 aa34.5■■■■□ 3.11
SFXN1-209ENST00000508290 PBRM1Q86U86 1689 aa34.47■■■■□ 3.11
SFXN1-209ENST00000508290 SYNJ2O15056 1496 aa34.47■■■■□ 3.11
SFXN1-209ENST00000508290 CHMP7Q8WUX9 453 aaPredicted RBP34.45■■■■□ 3.11
SFXN1-209ENST00000508290 ERICH3Q5RHP9 1530 aa34.34■■■■□ 3.09
SFXN1-209ENST00000508290 ARHGEF11O15085 1522 aa34.26■■■■□ 3.08
SFXN1-209ENST00000508290 ADAMTS12P58397 1594 aa34.25■■■■□ 3.07
SFXN1-209ENST00000508290 FHAD1B1AJZ9 1412 aa34.25■■■■□ 3.07
SFXN1-209ENST00000508290 RIMBP3CA6NJZ7 1639 aa34.23■■■■□ 3.07
SFXN1-209ENST00000508290 RIMBP3BA6NNM3 1639 aa34.23■■■■□ 3.07
SFXN1-209ENST00000508290 RIMBP3Q9UFD9 1639 aa34.23■■■■□ 3.07
SFXN1-209ENST00000508290 CLASP1Q7Z460 1538 aa34.23■■■■□ 3.07
SFXN1-209ENST00000508290 GRIN2AQ12879 1464 aa34.2■■■■□ 3.06
SFXN1-209ENST00000508290 KIF27Q86VH2 1401 aa34.18■■■■□ 3.06
SFXN1-209ENST00000508290 TRIM41Q8WV44 630 aa34.14■■■■□ 3.06
SFXN1-209ENST00000508290 NUP160Q12769 1436 aa34.07■■■■□ 3.04
SFXN1-209ENST00000508290 IGF1RP08069 1367 aa33.99■■■■□ 3.03
SFXN1-209ENST00000508290 CUL7Q14999 1698 aa33.97■■■■□ 3.03
SFXN1-209ENST00000508290 CEP170Q5SW79 1584 aa33.97■■■■□ 3.03
SFXN1-209ENST00000508290 ARAP1Q96P48 1450 aa33.95■■■■□ 3.02
SFXN1-209ENST00000508290 CYB5RLQ6IPT4 315 aa33.91■■■■□ 3.02
SFXN1-209ENST00000508290 SHROOM2Q13796 1616 aa33.81■■■■□ 3
SFXN1-209ENST00000508290 CARMIL1Q5VZK9 1371 aa33.8■■■■□ 3
SFXN1-209ENST00000508290 RUSC2Q8N2Y8 1516 aa33.76■■■■□ 3
SFXN1-209ENST00000508290 KIAA0586Q9BVV6 1533 aa33.72■■■□□ 2.99
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms