RNA–Protein interactions for RNA: ENST00000507009.5

GYPB-208, Transcript of glycophorin B (MNS blood group), humanhuman

TSL 1 (best)

Gene GYPB, Length 388 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GYPB-208ENST00000507009 AEBP2Q6ZN18 517 aaPredicted RBP16.81■□□□□ 0.28
GYPB-208ENST00000507009 CHIC1Q5VXU3 224 aa15.96■□□□□ 0.15
GYPB-208ENST00000507009 NISCHQ9Y2I1 1504 aa14.54□□□□□ -0.08
GYPB-208ENST00000507009 SENP3Q9H4L4 574 aaPredicted RBP14.33□□□□□ -0.12
GYPB-208ENST00000507009 PHF23Q9BUL5 403 aaPredicted RBP14.15□□□□□ -0.14
GYPB-208ENST00000507009 FOXD1Q16676 465 aa13.37□□□□□ -0.27
GYPB-208ENST00000507009 ABCC9O60706 1549 aa13.37□□□□□ -0.27
GYPB-208ENST00000507009 CCDC180Q9P1Z9 1646 aa13.11□□□□□ -0.31
GYPB-208ENST00000507009 PLPPR3Q6T4P5 718 aa12.76□□□□□ -0.37
GYPB-208ENST00000507009 DNAJC5BQ9UF47 199 aa12.64□□□□□ -0.39
GYPB-208ENST00000507009 RB1CC1Q8TDY2 1594 aa12.59□□□□□ -0.39
GYPB-208ENST00000507009 DCAF8L2P0C7V8 631 aa12.51□□□□□ -0.41
GYPB-208ENST00000507009 PIAS4Q8N2W9 510 aaPredicted RBP12.5□□□□□ -0.41
GYPB-208ENST00000507009 PPP6R1Q9UPN7 881 aa12.5□□□□□ -0.41
GYPB-208ENST00000507009 MSH5O43196 834 aa12.49□□□□□ -0.41
GYPB-208ENST00000507009 ADRA2BP18089 450 aa12.47□□□□□ -0.41
GYPB-208ENST00000507009 PABPN1Q86U42 306 aaKnown RBP eCLIP12.44□□□□□ -0.42
GYPB-208ENST00000507009 NACADO15069 1562 aa12.43□□□□□ -0.42
GYPB-208ENST00000507009 UNC13AQ9UPW8 1703 aa12.34□□□□□ -0.43
GYPB-208ENST00000507009 BICRAQ9NZM4 1560 aa12.22□□□□□ -0.45
GYPB-208ENST00000507009 POTEDQ86YR6 584 aa12.2□□□□□ -0.46
GYPB-208ENST00000507009 MYO15BQ96JP2 1530 aa12.11□□□□□ -0.47
GYPB-208ENST00000507009 SCRIBQ14160 1630 aa12.04□□□□□ -0.48
GYPB-208ENST00000507009 CC2D2AQ9P2K1 1620 aa12.03□□□□□ -0.48
GYPB-208ENST00000507009 CECR2Q9BXF3 1484 aa12.02□□□□□ -0.49
GYPB-208ENST00000507009 ZCCHC6Q5VYS8 1495 aaKnown RBP12□□□□□ -0.49
GYPB-208ENST00000507009 SHROOM4Q9ULL8 1493 aa11.95□□□□□ -0.5
GYPB-208ENST00000507009 EIF4G1Q04637 1599 aaKnown RBP11.94□□□□□ -0.5
GYPB-208ENST00000507009 DCAF1Q9Y4B6 1507 aa11.92□□□□□ -0.5
GYPB-208ENST00000507009 DNAJC5Q9H3Z4 198 aa11.7□□□□□ -0.54
GYPB-208ENST00000507009 ERCC6Q03468 1493 aa11.57□□□□□ -0.56
GYPB-208ENST00000507009 CUX2O14529 1486 aa11.51□□□□□ -0.57
GYPB-208ENST00000507009 MAPK8IP2Q13387 824 aaPredicted RBP11.45□□□□□ -0.58
GYPB-208ENST00000507009 NCAPD3P42695 1498 aa11.44□□□□□ -0.58
GYPB-208ENST00000507009 NESP48681 1621 aa11.43□□□□□ -0.58
GYPB-208ENST00000507009 ATAD2BQ9ULI0 1458 aa11.43□□□□□ -0.58
GYPB-208ENST00000507009 SMARCA4P51532 1647 aa11.4□□□□□ -0.58
GYPB-208ENST00000507009 SCAF1Q9H7N4 1312 aaKnown RBP11.39□□□□□ -0.59
GYPB-208ENST00000507009 SMARCA2P51531 1590 aa11.39□□□□□ -0.59
GYPB-208ENST00000507009 HMGXB3Q12766 1538 aa11.36□□□□□ -0.59
GYPB-208ENST00000507009 DMRT2Q9Y5R5 561 aa11.36□□□□□ -0.59
GYPB-208ENST00000507009 BAZ1BQ9UIG0 1483 aaKnown RBP11.35□□□□□ -0.59
GYPB-208ENST00000507009 THOC2Q8NI27 1593 aaKnown RBP11.3□□□□□ -0.6
GYPB-208ENST00000507009 BAZ1AQ9NRL2 1556 aaPredicted RBP11.3□□□□□ -0.6
GYPB-208ENST00000507009 KIF21AQ7Z4S6 1674 aa11.28□□□□□ -0.6
GYPB-208ENST00000507009 LAMC3Q9Y6N6 1575 aa11.26□□□□□ -0.61
GYPB-208ENST00000507009 TRIM41Q8WV44 630 aa11.26□□□□□ -0.61
GYPB-208ENST00000507009 MROH2BQ7Z745 1585 aa11.24□□□□□ -0.61
GYPB-208ENST00000507009 PEG3Q9GZU2 1588 aa11.21□□□□□ -0.61
GYPB-208ENST00000507009 PDS5BQ9NTI5 1447 aa11.2□□□□□ -0.62
GYPB-208ENST00000507009 PPP4R3CPQ6ZMV5 832 aa11.2□□□□□ -0.62
GYPB-208ENST00000507009 MRC2Q9UBG0 1479 aa11.13□□□□□ -0.63
GYPB-208ENST00000507009 WIZO95785 1651 aa11.13□□□□□ -0.63
GYPB-208ENST00000507009 CADPSQ9ULU8 1353 aa11.13□□□□□ -0.63
GYPB-208ENST00000507009 WDR62O43379 1518 aa11.09□□□□□ -0.63
GYPB-208ENST00000507009 CEP164Q9UPV0 1460 aa11.07□□□□□ -0.64
GYPB-208ENST00000507009 FANCD2Q9BXW9 1451 aa11.04□□□□□ -0.64
GYPB-208ENST00000507009 OSCARQ8IYS5 282 aa10.99□□□□□ -0.65
GYPB-208ENST00000507009 CNKSR2Q8WXI2 1034 aa10.98□□□□□ -0.65
GYPB-208ENST00000507009 URB2Q14146 1524 aaKnown RBP10.95□□□□□ -0.66
GYPB-208ENST00000507009 CFTRP13569 1480 aa10.95□□□□□ -0.66
GYPB-208ENST00000507009 DCAF8L1A6NGE4 600 aa10.94□□□□□ -0.66
GYPB-208ENST00000507009 HOXD11P31277 338 aaPredicted RBP10.94□□□□□ -0.66
GYPB-208ENST00000507009 TOP2AP11388 1531 aaKnown RBP10.93□□□□□ -0.66
GYPB-208ENST00000507009 RSF1Q96T23 1441 aaPredicted RBP10.92□□□□□ -0.66
GYPB-208ENST00000507009 RIMBP3CA6NJZ7 1639 aa10.9□□□□□ -0.66
GYPB-208ENST00000507009 RIMBP3BA6NNM3 1639 aa10.9□□□□□ -0.66
GYPB-208ENST00000507009 RIMBP3Q9UFD9 1639 aa10.9□□□□□ -0.66
GYPB-208ENST00000507009 PRDM2Q13029 1718 aa10.88□□□□□ -0.67
GYPB-208ENST00000507009 RNF216Q9NWF9 866 aaPredicted RBP10.87□□□□□ -0.67
GYPB-208ENST00000507009 ZNF608Q9ULD9 1512 aaPredicted RBP10.87□□□□□ -0.67
GYPB-208ENST00000507009 IFT140Q96RY7 1462 aa10.83□□□□□ -0.68
GYPB-208ENST00000507009 ARHGEF11O15085 1522 aa10.82□□□□□ -0.68
GYPB-208ENST00000507009 CCDC88BA6NC98 1476 aa10.81□□□□□ -0.68
GYPB-208ENST00000507009 TOPBP1Q92547 1522 aa10.8□□□□□ -0.68
GYPB-208ENST00000507009 CYB5RLQ6IPT4 315 aa10.8□□□□□ -0.68
GYPB-208ENST00000507009 EIF4G3O43432 1585 aaKnown RBP10.8□□□□□ -0.68
GYPB-208ENST00000507009 FBLN2P98095 1184 aa10.79□□□□□ -0.68
GYPB-208ENST00000507009 CHD1O14646 1710 aa10.78□□□□□ -0.68
GYPB-208ENST00000507009 TRHP20396 242 aaPredicted RBP10.78□□□□□ -0.68
GYPB-208ENST00000507009 NCBP3Q53F19 620 aaKnown RBP10.75□□□□□ -0.69
GYPB-208ENST00000507009 AQRO60306 1485 aaKnown RBP eCLIP10.74□□□□□ -0.69
GYPB-208ENST00000507009 DNMBPQ6XZF7 1577 aa10.74□□□□□ -0.69
GYPB-208ENST00000507009 CACNB1Q02641 598 aaPredicted RBP10.74□□□□□ -0.69
GYPB-208ENST00000507009 ABCC8Q09428 1581 aa10.73□□□□□ -0.69
GYPB-208ENST00000507009 TARBP1Q13395 1621 aaKnown RBP10.71□□□□□ -0.69
GYPB-208ENST00000507009 ARAP1Q96P48 1450 aa10.7□□□□□ -0.7
GYPB-208ENST00000507009 RAD54L2Q9Y4B4 1467 aa10.68□□□□□ -0.7
GYPB-208ENST00000507009 POLA1P09884 1462 aaPredicted RBP10.68□□□□□ -0.7
GYPB-208ENST00000507009 TDRD9Q8NDG6 1382 aaKnown RBP10.67□□□□□ -0.7
GYPB-208ENST00000507009 RNF39Q9H2S5 420 aa10.66□□□□□ -0.7
GYPB-208ENST00000507009 SNAPC4Q5SXM2 1469 aa10.64□□□□□ -0.71
GYPB-208ENST00000507009 SOGA1O94964 1423 aa10.64□□□□□ -0.71
GYPB-208ENST00000507009 CHMP7Q8WUX9 453 aaPredicted RBP10.62□□□□□ -0.71
GYPB-208ENST00000507009 NPM3O75607 178 aaKnown RBP10.61□□□□□ -0.71
GYPB-208ENST00000507009 FGD5Q6ZNL6 1462 aa10.61□□□□□ -0.71
GYPB-208ENST00000507009 SYNJ1O43426 1573 aa10.59□□□□□ -0.71
GYPB-208ENST00000507009 CLASP1Q7Z460 1538 aa10.58□□□□□ -0.72
GYPB-208ENST00000507009 CUX1P39880 1505 aa10.56□□□□□ -0.72
GYPB-208ENST00000507009 GRIN2BQ13224 1484 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms