RNA–Protein interactions for RNA: ENST00000506981.1

LMNA-221, Transcript of lamin A/C, humanhuman

TSL 2

Gene LMNA, Length 576 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-221ENST00000506981 NISCHQ9Y2I1 1504 aa46.86■■■■■ 5.09
LMNA-221ENST00000506981 CCDC180Q9P1Z9 1646 aa41.81■■■■■ 4.28
LMNA-221ENST00000506981 ABCC9O60706 1549 aa40.75■■■■■ 4.11
LMNA-221ENST00000506981 RB1CC1Q8TDY2 1594 aa39.3■■■■□ 3.88
LMNA-221ENST00000506981 NACADO15069 1562 aa39.22■■■■□ 3.87
LMNA-221ENST00000506981 DCAF8L2P0C7V8 631 aa39.13■■■■□ 3.85
LMNA-221ENST00000506981 ZCCHC6Q5VYS8 1495 aaKnown RBP39.05■■■■□ 3.84
LMNA-221ENST00000506981 MYO15BQ96JP2 1530 aa38.94■■■■□ 3.82
LMNA-221ENST00000506981 DCAF1Q9Y4B6 1507 aa38.79■■■■□ 3.8
LMNA-221ENST00000506981 UNC13AQ9UPW8 1703 aa38.5■■■■□ 3.75
LMNA-221ENST00000506981 SCRIBQ14160 1630 aa38.09■■■■□ 3.69
LMNA-221ENST00000506981 BICRAQ9NZM4 1560 aa38.02■■■■□ 3.68
LMNA-221ENST00000506981 PABPN1Q86U42 306 aaKnown RBP eCLIP38■■■■□ 3.67
LMNA-221ENST00000506981 SHROOM4Q9ULL8 1493 aa37.68■■■■□ 3.62
LMNA-221ENST00000506981 DNAJC5BQ9UF47 199 aa37.22■■■■□ 3.55
LMNA-221ENST00000506981 EIF4G1Q04637 1599 aaKnown RBP37.05■■■■□ 3.52
LMNA-221ENST00000506981 CC2D2AQ9P2K1 1620 aa36.92■■■■□ 3.5
LMNA-221ENST00000506981 CECR2Q9BXF3 1484 aa36.62■■■■□ 3.45
LMNA-221ENST00000506981 SMARCA4P51532 1647 aa36.43■■■■□ 3.42
LMNA-221ENST00000506981 BAZ1AQ9NRL2 1556 aaPredicted RBP36.39■■■■□ 3.42
LMNA-221ENST00000506981 SMARCA2P51531 1590 aa36.19■■■■□ 3.38
LMNA-221ENST00000506981 ATAD2BQ9ULI0 1458 aa36.13■■■■□ 3.37
LMNA-221ENST00000506981 NCAPD3P42695 1498 aa36.1■■■■□ 3.37
LMNA-221ENST00000506981 MROH2BQ7Z745 1585 aa36.1■■■■□ 3.37
LMNA-221ENST00000506981 PEG3Q9GZU2 1588 aa36.03■■■■□ 3.36
LMNA-221ENST00000506981 HMGXB3Q12766 1538 aa36.02■■■■□ 3.36
LMNA-221ENST00000506981 BAZ1BQ9UIG0 1483 aaKnown RBP35.91■■■■□ 3.34
LMNA-221ENST00000506981 WIZO95785 1651 aa35.79■■■■□ 3.32
LMNA-221ENST00000506981 RSF1Q96T23 1441 aaPredicted RBP35.65■■■■□ 3.3
LMNA-221ENST00000506981 TOP2AP11388 1531 aaKnown RBP35.4■■■■□ 3.26
LMNA-221ENST00000506981 LAMC3Q9Y6N6 1575 aa35.26■■■■□ 3.24
LMNA-221ENST00000506981 NESP48681 1621 aa35.24■■■■□ 3.23
LMNA-221ENST00000506981 ERCC6Q03468 1493 aa35.19■■■■□ 3.22
LMNA-221ENST00000506981 CADPSQ9ULU8 1353 aa35.05■■■■□ 3.2
LMNA-221ENST00000506981 KIF21AQ7Z4S6 1674 aa34.98■■■■□ 3.19
LMNA-221ENST00000506981 PDS5BQ9NTI5 1447 aa34.97■■■■□ 3.19
LMNA-221ENST00000506981 CCDC88BA6NC98 1476 aa34.9■■■■□ 3.18
LMNA-221ENST00000506981 PRDM2Q13029 1718 aa34.87■■■■□ 3.17
LMNA-221ENST00000506981 CFTRP13569 1480 aa34.85■■■■□ 3.17
LMNA-221ENST00000506981 THOC2Q8NI27 1593 aaKnown RBP34.8■■■■□ 3.16
LMNA-221ENST00000506981 SUPT5HO00267 1087 aaKnown RBP34.79■■■■□ 3.16
LMNA-221ENST00000506981 CUX2O14529 1486 aa34.78■■■■□ 3.16
LMNA-221ENST00000506981 FANCD2Q9BXW9 1451 aa34.7■■■■□ 3.15
LMNA-221ENST00000506981 CEP164Q9UPV0 1460 aa34.7■■■■□ 3.15
LMNA-221ENST00000506981 MRC2Q9UBG0 1479 aa34.62■■■■□ 3.13
LMNA-221ENST00000506981 WDR62O43379 1518 aa34.51■■■■□ 3.12
LMNA-221ENST00000506981 URB2Q14146 1524 aaKnown RBP34.32■■■■□ 3.08
LMNA-221ENST00000506981 ABCC8Q09428 1581 aa34.19■■■■□ 3.06
LMNA-221ENST00000506981 DNMBPQ6XZF7 1577 aa34.16■■■■□ 3.06
LMNA-221ENST00000506981 TOPBP1Q92547 1522 aa34.15■■■■□ 3.06
LMNA-221ENST00000506981 IFT140Q96RY7 1462 aa33.94■■■■□ 3.02
LMNA-221ENST00000506981 CUX1P39880 1505 aa33.89■■■■□ 3.02
LMNA-221ENST00000506981 POLA1P09884 1462 aaPredicted RBP33.84■■■■□ 3.01
LMNA-221ENST00000506981 TARBP1Q13395 1621 aaKnown RBP33.79■■■■□ 3
LMNA-221ENST00000506981 FGD5Q6ZNL6 1462 aa33.79■■■■□ 3
LMNA-221ENST00000506981 ZNF608Q9ULD9 1512 aaPredicted RBP33.73■■■□□ 2.99
LMNA-221ENST00000506981 EIF4G3O43432 1585 aaKnown RBP33.72■■■□□ 2.99
LMNA-221ENST00000506981 SOGA1O94964 1423 aa33.7■■■□□ 2.98
LMNA-221ENST00000506981 BIVM-ERCC5R4GMW8 1640 aa33.69■■■□□ 2.98
LMNA-221ENST00000506981 WRNQ14191 1432 aaPredicted RBP eCLIP33.68■■■□□ 2.98
LMNA-221ENST00000506981 RAD54L2Q9Y4B4 1467 aa33.67■■■□□ 2.98
LMNA-221ENST00000506981 TOP2BQ02880 1626 aa33.65■■■□□ 2.98
LMNA-221ENST00000506981 SYNJ1O43426 1573 aa33.62■■■□□ 2.97
LMNA-221ENST00000506981 WDR97A6NE52 1622 aa33.61■■■□□ 2.97
LMNA-221ENST00000506981 DNAJC5Q9H3Z4 198 aa33.58■■■□□ 2.97
LMNA-221ENST00000506981 AQRO60306 1485 aaKnown RBP eCLIP33.53■■■□□ 2.962e-8■■■■■ 39.1
LMNA-221ENST00000506981 TDRD9Q8NDG6 1382 aaKnown RBP33.47■■■□□ 2.95
LMNA-221ENST00000506981 ABCA10Q8WWZ4 1543 aa33.45■■■□□ 2.95
LMNA-221ENST00000506981 PBRM1Q86U86 1689 aa33.42■■■□□ 2.94
LMNA-221ENST00000506981 ABCA5Q8WWZ7 1642 aa33.38■■■□□ 2.93
LMNA-221ENST00000506981 CHD1O14646 1710 aa33.36■■■□□ 2.93
LMNA-221ENST00000506981 GRIN2BQ13224 1484 aa33.33■■■□□ 2.93
LMNA-221ENST00000506981 GAPVD1Q14C86 1478 aa33.33■■■□□ 2.93
LMNA-221ENST00000506981 SNAPC4Q5SXM2 1469 aa33.29■■■□□ 2.92
LMNA-221ENST00000506981 OSCARQ8IYS5 282 aa33.28■■■□□ 2.92
LMNA-221ENST00000506981 MAGI1Q96QZ7 1491 aaPredicted RBP33.26■■■□□ 2.92
LMNA-221ENST00000506981 FBLN2P98095 1184 aa33.17■■■□□ 2.9
LMNA-221ENST00000506981 SYNJ2O15056 1496 aa33.12■■■□□ 2.89
LMNA-221ENST00000506981 ERICH3Q5RHP9 1530 aa33.08■■■□□ 2.89
LMNA-221ENST00000506981 CHMP7Q8WUX9 453 aaPredicted RBP33.07■■■□□ 2.88
LMNA-221ENST00000506981 ADAMTS12P58397 1594 aa33.06■■■□□ 2.88
LMNA-221ENST00000506981 KIF27Q86VH2 1401 aa32.99■■■□□ 2.87
LMNA-221ENST00000506981 FHAD1B1AJZ9 1412 aa32.94■■■□□ 2.86
LMNA-221ENST00000506981 GRIN2AQ12879 1464 aa32.91■■■□□ 2.86
LMNA-221ENST00000506981 CUL7Q14999 1698 aa32.88■■■□□ 2.85
LMNA-221ENST00000506981 CLASP1Q7Z460 1538 aa32.87■■■□□ 2.85
LMNA-221ENST00000506981 TRIM41Q8WV44 630 aa32.87■■■□□ 2.85
LMNA-221ENST00000506981 RIMBP3CA6NJZ7 1639 aa32.84■■■□□ 2.85
LMNA-221ENST00000506981 RIMBP3BA6NNM3 1639 aa32.84■■■□□ 2.85
LMNA-221ENST00000506981 RIMBP3Q9UFD9 1639 aa32.84■■■□□ 2.85
LMNA-221ENST00000506981 ARHGEF11O15085 1522 aa32.8■■■□□ 2.84
LMNA-221ENST00000506981 CEP170Q5SW79 1584 aa32.75■■■□□ 2.83
LMNA-221ENST00000506981 IGF1RP08069 1367 aa32.75■■■□□ 2.83
LMNA-221ENST00000506981 NUP160Q12769 1436 aa32.72■■■□□ 2.83
LMNA-221ENST00000506981 RUSC2Q8N2Y8 1516 aa32.61■■■□□ 2.81
LMNA-221ENST00000506981 CARMIL1Q5VZK9 1371 aa32.61■■■□□ 2.81
LMNA-221ENST00000506981 SHROOM2Q13796 1616 aa32.55■■■□□ 2.8
LMNA-221ENST00000506981 ARAP1Q96P48 1450 aa32.51■■■□□ 2.79
LMNA-221ENST00000506981 RAPGEF2Q9Y4G8 1499 aa32.47■■■□□ 2.79
LMNA-221ENST00000506981 KIAA0586Q9BVV6 1533 aa32.43■■■□□ 2.78
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms