RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 NISCHQ9Y2I1 1504 aa40.5■■■■■ 4.07
SNCA-209ENST00000506244 CCDC180Q9P1Z9 1646 aa36.1■■■■□ 3.37
SNCA-209ENST00000506244 ABCC9O60706 1549 aa35.17■■■■□ 3.22
SNCA-209ENST00000506244 RB1CC1Q8TDY2 1594 aa33.94■■■■□ 3.02
SNCA-209ENST00000506244 NACADO15069 1562 aa33.91■■■■□ 3.02
SNCA-209ENST00000506244 ZCCHC6Q5VYS8 1495 aaKnown RBP33.77■■■■□ 3
SNCA-209ENST00000506244 MYO15BQ96JP2 1530 aa33.74■■■□□ 2.99
SNCA-209ENST00000506244 DCAF8L2P0C7V8 631 aa33.71■■■□□ 2.99
SNCA-209ENST00000506244 DCAF1Q9Y4B6 1507 aa33.58■■■□□ 2.97
SNCA-209ENST00000506244 UNC13AQ9UPW8 1703 aa33.1■■■□□ 2.89
SNCA-209ENST00000506244 SCRIBQ14160 1630 aa32.86■■■□□ 2.85
SNCA-209ENST00000506244 BICRAQ9NZM4 1560 aa32.83■■■□□ 2.85
SNCA-209ENST00000506244 PABPN1Q86U42 306 aaKnown RBP eCLIP32.79■■■□□ 2.84
SNCA-209ENST00000506244 SHROOM4Q9ULL8 1493 aa32.67■■■□□ 2.82
SNCA-209ENST00000506244 DNAJC5BQ9UF47 199 aa32.11■■■□□ 2.73
SNCA-209ENST00000506244 EIF4G1Q04637 1599 aaKnown RBP32.01■■■□□ 2.71
SNCA-209ENST00000506244 CC2D2AQ9P2K1 1620 aa31.85■■■□□ 2.69
SNCA-209ENST00000506244 CECR2Q9BXF3 1484 aa31.64■■■□□ 2.66
SNCA-209ENST00000506244 SMARCA4P51532 1647 aa31.45■■■□□ 2.62
SNCA-209ENST00000506244 BAZ1AQ9NRL2 1556 aaPredicted RBP31.44■■■□□ 2.62
SNCA-209ENST00000506244 SMARCA2P51531 1590 aa31.29■■■□□ 2.6
SNCA-209ENST00000506244 ATAD2BQ9ULI0 1458 aa31.24■■■□□ 2.59
SNCA-209ENST00000506244 NCAPD3P42695 1498 aa31.23■■■□□ 2.59
SNCA-209ENST00000506244 MROH2BQ7Z745 1585 aa31.17■■■□□ 2.58
SNCA-209ENST00000506244 PEG3Q9GZU2 1588 aa31.17■■■□□ 2.58
SNCA-209ENST00000506244 HMGXB3Q12766 1538 aa31.15■■■□□ 2.58
SNCA-209ENST00000506244 BAZ1BQ9UIG0 1483 aaKnown RBP31.03■■■□□ 2.56
SNCA-209ENST00000506244 WIZO95785 1651 aa30.84■■■□□ 2.53
SNCA-209ENST00000506244 RSF1Q96T23 1441 aaPredicted RBP30.82■■■□□ 2.52
SNCA-209ENST00000506244 TOP2AP11388 1531 aaKnown RBP30.59■■■□□ 2.49
SNCA-209ENST00000506244 LAMC3Q9Y6N6 1575 aa30.46■■■□□ 2.47
SNCA-209ENST00000506244 NESP48681 1621 aa30.4■■■□□ 2.46
SNCA-209ENST00000506244 ERCC6Q03468 1493 aa30.4■■■□□ 2.46
SNCA-209ENST00000506244 CADPSQ9ULU8 1353 aa30.31■■■□□ 2.44
SNCA-209ENST00000506244 PDS5BQ9NTI5 1447 aa30.24■■■□□ 2.43
SNCA-209ENST00000506244 CCDC88BA6NC98 1476 aa30.15■■■□□ 2.42
SNCA-209ENST00000506244 CFTRP13569 1480 aa30.15■■■□□ 2.42
SNCA-209ENST00000506244 KIF21AQ7Z4S6 1674 aa30.13■■■□□ 2.41
SNCA-209ENST00000506244 CUX2O14529 1486 aa30.1■■■□□ 2.41
SNCA-209ENST00000506244 THOC2Q8NI27 1593 aaKnown RBP30.04■■■□□ 2.4
SNCA-209ENST00000506244 PRDM2Q13029 1718 aa30.01■■■□□ 2.39
SNCA-209ENST00000506244 FANCD2Q9BXW9 1451 aa29.99■■■□□ 2.39
SNCA-209ENST00000506244 CEP164Q9UPV0 1460 aa29.99■■■□□ 2.39
SNCA-209ENST00000506244 SUPT5HO00267 1087 aaKnown RBP29.98■■■□□ 2.39
SNCA-209ENST00000506244 MRC2Q9UBG0 1479 aa29.93■■■□□ 2.38
SNCA-209ENST00000506244 WDR62O43379 1518 aa29.84■■■□□ 2.37
SNCA-209ENST00000506244 URB2Q14146 1524 aaKnown RBP29.65■■■□□ 2.34
SNCA-209ENST00000506244 ABCC8Q09428 1581 aa29.56■■■□□ 2.32
SNCA-209ENST00000506244 DNMBPQ6XZF7 1577 aa29.52■■■□□ 2.32
SNCA-209ENST00000506244 TOPBP1Q92547 1522 aa29.5■■■□□ 2.31
SNCA-209ENST00000506244 IFT140Q96RY7 1462 aa29.36■■■□□ 2.29
SNCA-209ENST00000506244 CUX1P39880 1505 aa29.26■■■□□ 2.27
SNCA-209ENST00000506244 POLA1P09884 1462 aaPredicted RBP29.25■■■□□ 2.27
SNCA-209ENST00000506244 FGD5Q6ZNL6 1462 aa29.18■■■□□ 2.26
SNCA-209ENST00000506244 TARBP1Q13395 1621 aaKnown RBP29.18■■■□□ 2.26
SNCA-209ENST00000506244 ZNF608Q9ULD9 1512 aaPredicted RBP29.12■■■□□ 2.25
SNCA-209ENST00000506244 WRNQ14191 1432 aaPredicted RBP eCLIP29.11■■■□□ 2.25
SNCA-209ENST00000506244 SOGA1O94964 1423 aa29.11■■■□□ 2.25
SNCA-209ENST00000506244 EIF4G3O43432 1585 aaKnown RBP29.1■■■□□ 2.25
SNCA-209ENST00000506244 WDR97A6NE52 1622 aa29.07■■■□□ 2.24
SNCA-209ENST00000506244 TOP2BQ02880 1626 aa29.07■■■□□ 2.24
SNCA-209ENST00000506244 BIVM-ERCC5R4GMW8 1640 aa29.07■■■□□ 2.24
SNCA-209ENST00000506244 RAD54L2Q9Y4B4 1467 aa29.06■■■□□ 2.24
SNCA-209ENST00000506244 SYNJ1O43426 1573 aa29.01■■■□□ 2.24
SNCA-209ENST00000506244 DNAJC5Q9H3Z4 198 aa29.01■■■□□ 2.23
SNCA-209ENST00000506244 AQRO60306 1485 aaKnown RBP eCLIP28.96■■■□□ 2.23
SNCA-209ENST00000506244 ABCA10Q8WWZ4 1543 aa28.93■■■□□ 2.22
SNCA-209ENST00000506244 TDRD9Q8NDG6 1382 aaKnown RBP28.9■■■□□ 2.22
SNCA-209ENST00000506244 GRIN2BQ13224 1484 aa28.82■■■□□ 2.2
SNCA-209ENST00000506244 ABCA5Q8WWZ7 1642 aa28.82■■■□□ 2.2
SNCA-209ENST00000506244 GAPVD1Q14C86 1478 aa28.8■■■□□ 2.2
SNCA-209ENST00000506244 PBRM1Q86U86 1689 aa28.78■■■□□ 2.2
SNCA-209ENST00000506244 MAGI1Q96QZ7 1491 aaPredicted RBP28.77■■■□□ 2.2
SNCA-209ENST00000506244 SNAPC4Q5SXM2 1469 aa28.76■■■□□ 2.19
SNCA-209ENST00000506244 OSCARQ8IYS5 282 aa28.75■■■□□ 2.19
SNCA-209ENST00000506244 CHD1O14646 1710 aa28.71■■■□□ 2.19
SNCA-209ENST00000506244 SYNJ2O15056 1496 aa28.64■■■□□ 2.17
SNCA-209ENST00000506244 ERICH3Q5RHP9 1530 aa28.61■■■□□ 2.17
SNCA-209ENST00000506244 FBLN2P98095 1184 aa28.61■■■□□ 2.17
SNCA-209ENST00000506244 CHMP7Q8WUX9 453 aaPredicted RBP28.57■■■□□ 2.16
SNCA-209ENST00000506244 ADAMTS12P58397 1594 aa28.56■■■□□ 2.16
SNCA-209ENST00000506244 KIF27Q86VH2 1401 aa28.52■■■□□ 2.16
SNCA-209ENST00000506244 FHAD1B1AJZ9 1412 aa28.49■■■□□ 2.15
SNCA-209ENST00000506244 GRIN2AQ12879 1464 aa28.44■■■□□ 2.14
SNCA-209ENST00000506244 CLASP1Q7Z460 1538 aa28.41■■■□□ 2.14
SNCA-209ENST00000506244 CUL7Q14999 1698 aa28.38■■■□□ 2.13
SNCA-209ENST00000506244 TRIM41Q8WV44 630 aa28.37■■■□□ 2.13
SNCA-209ENST00000506244 ARHGEF11O15085 1522 aa28.33■■■□□ 2.13
SNCA-209ENST00000506244 RIMBP3CA6NJZ7 1639 aa28.32■■■□□ 2.12
SNCA-209ENST00000506244 RIMBP3BA6NNM3 1639 aa28.32■■■□□ 2.12
SNCA-209ENST00000506244 RIMBP3Q9UFD9 1639 aa28.32■■■□□ 2.12
SNCA-209ENST00000506244 IGF1RP08069 1367 aa28.31■■■□□ 2.12
SNCA-209ENST00000506244 NUP160Q12769 1436 aa28.31■■■□□ 2.12
SNCA-209ENST00000506244 CEP170Q5SW79 1584 aa28.28■■■□□ 2.12
SNCA-209ENST00000506244 CARMIL1Q5VZK9 1371 aa28.18■■■□□ 2.1
SNCA-209ENST00000506244 RUSC2Q8N2Y8 1516 aa28.14■■■□□ 2.1
SNCA-209ENST00000506244 SHROOM2Q13796 1616 aa28.1■■■□□ 2.09
SNCA-209ENST00000506244 ARAP1Q96P48 1450 aa28.08■■■□□ 2.09
SNCA-209ENST00000506244 RAPGEF2Q9Y4G8 1499 aa28.06■■■□□ 2.08
SNCA-209ENST00000506244 KIAA0586Q9BVV6 1533 aa28.04■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms