RNA–Protein interactions for RNA: ENST00000506161.5

PDLIM7-215, Transcript of PDZ and LIM domain 7, humanhuman

TSL 3

Gene PDLIM7, Length 759 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-215ENST00000506161 NISCHQ9Y2I1 1504 aa41.75■■■■■ 4.27
PDLIM7-215ENST00000506161 CCDC180Q9P1Z9 1646 aa37.32■■■■□ 3.57
PDLIM7-215ENST00000506161 ABCC9O60706 1549 aa37.05■■■■□ 3.52
PDLIM7-215ENST00000506161 DNAJC5BQ9UF47 199 aa35.39■■■■□ 3.26
PDLIM7-215ENST00000506161 RB1CC1Q8TDY2 1594 aa35.25■■■■□ 3.23
PDLIM7-215ENST00000506161 NACADO15069 1562 aa35.1■■■■□ 3.21
PDLIM7-215ENST00000506161 DCAF8L2P0C7V8 631 aa34.94■■■■□ 3.18
PDLIM7-215ENST00000506161 UNC13AQ9UPW8 1703 aa34.77■■■■□ 3.16
PDLIM7-215ENST00000506161 ZCCHC6Q5VYS8 1495 aaKnown RBP34.71■■■■□ 3.15
PDLIM7-215ENST00000506161 MYO15BQ96JP2 1530 aa34.71■■■■□ 3.15
PDLIM7-215ENST00000506161 DCAF1Q9Y4B6 1507 aa34.45■■■■□ 3.1
PDLIM7-215ENST00000506161 PABPN1Q86U42 306 aaKnown RBP eCLIP34.43■■■■□ 3.1
PDLIM7-215ENST00000506161 BICRAQ9NZM4 1560 aa34.4■■■■□ 3.1
PDLIM7-215ENST00000506161 SCRIBQ14160 1630 aa34.1■■■■□ 3.05
PDLIM7-215ENST00000506161 SHROOM4Q9ULL8 1493 aa33.69■■■□□ 2.98
PDLIM7-215ENST00000506161 CECR2Q9BXF3 1484 aa33.46■■■□□ 2.95
PDLIM7-215ENST00000506161 EIF4G1Q04637 1599 aaKnown RBP33.43■■■□□ 2.94
PDLIM7-215ENST00000506161 CC2D2AQ9P2K1 1620 aa33.42■■■□□ 2.94
PDLIM7-215ENST00000506161 DNAJC5Q9H3Z4 198 aa33.06■■■□□ 2.88
PDLIM7-215ENST00000506161 SMARCA4P51532 1647 aa32.55■■■□□ 2.8
PDLIM7-215ENST00000506161 ATAD2BQ9ULI0 1458 aa32.41■■■□□ 2.78
PDLIM7-215ENST00000506161 NCAPD3P42695 1498 aa32.4■■■□□ 2.78
PDLIM7-215ENST00000506161 BAZ1AQ9NRL2 1556 aaPredicted RBP32.33■■■□□ 2.77
PDLIM7-215ENST00000506161 SMARCA2P51531 1590 aa32.28■■■□□ 2.76
PDLIM7-215ENST00000506161 MROH2BQ7Z745 1585 aa32.26■■■□□ 2.75
PDLIM7-215ENST00000506161 CUX2O14529 1486 aa32.25■■■□□ 2.75
PDLIM7-215ENST00000506161 HMGXB3Q12766 1538 aa32.23■■■□□ 2.75
PDLIM7-215ENST00000506161 PEG3Q9GZU2 1588 aa32.18■■■□□ 2.74
PDLIM7-215ENST00000506161 ERCC6Q03468 1493 aa32.07■■■□□ 2.72
PDLIM7-215ENST00000506161 BAZ1BQ9UIG0 1483 aaKnown RBP32.07■■■□□ 2.72
PDLIM7-215ENST00000506161 WIZO95785 1651 aa31.94■■■□□ 2.7
PDLIM7-215ENST00000506161 NESP48681 1621 aa31.93■■■□□ 2.7
PDLIM7-215ENST00000506161 RSF1Q96T23 1441 aaPredicted RBP31.66■■■□□ 2.66
PDLIM7-215ENST00000506161 LAMC3Q9Y6N6 1575 aa31.63■■■□□ 2.65
PDLIM7-215ENST00000506161 KIF21AQ7Z4S6 1674 aa31.58■■■□□ 2.65
PDLIM7-215ENST00000506161 THOC2Q8NI27 1593 aaKnown RBP31.53■■■□□ 2.64
PDLIM7-215ENST00000506161 TOP2AP11388 1531 aaKnown RBP31.44■■■□□ 2.62
PDLIM7-215ENST00000506161 CADPSQ9ULU8 1353 aa31.41■■■□□ 2.62
PDLIM7-215ENST00000506161 TRIM41Q8WV44 630 aa31.32■■■□□ 2.6
PDLIM7-215ENST00000506161 PDS5BQ9NTI5 1447 aa31.32■■■□□ 2.6
PDLIM7-215ENST00000506161 CFTRP13569 1480 aa31.18■■■□□ 2.58
PDLIM7-215ENST00000506161 MRC2Q9UBG0 1479 aa31.14■■■□□ 2.57
PDLIM7-215ENST00000506161 WDR62O43379 1518 aa31.1■■■□□ 2.57
PDLIM7-215ENST00000506161 FANCD2Q9BXW9 1451 aa31.1■■■□□ 2.57
PDLIM7-215ENST00000506161 CCDC88BA6NC98 1476 aa31.09■■■□□ 2.57
PDLIM7-215ENST00000506161 CEP164Q9UPV0 1460 aa31.07■■■□□ 2.56
PDLIM7-215ENST00000506161 PRDM2Q13029 1718 aa31.07■■■□□ 2.56
PDLIM7-215ENST00000506161 URB2Q14146 1524 aaKnown RBP30.91■■■□□ 2.54
PDLIM7-215ENST00000506161 OSCARQ8IYS5 282 aa30.67■■■□□ 2.5
PDLIM7-215ENST00000506161 TOPBP1Q92547 1522 aa30.6■■■□□ 2.49
PDLIM7-215ENST00000506161 DNMBPQ6XZF7 1577 aa30.51■■■□□ 2.47
PDLIM7-215ENST00000506161 SUPT5HO00267 1087 aaKnown RBP30.48■■■□□ 2.47
PDLIM7-215ENST00000506161 ZNF608Q9ULD9 1512 aaPredicted RBP30.47■■■□□ 2.47
PDLIM7-215ENST00000506161 IFT140Q96RY7 1462 aa30.41■■■□□ 2.46
PDLIM7-215ENST00000506161 ABCC8Q09428 1581 aa30.38■■■□□ 2.45
PDLIM7-215ENST00000506161 TARBP1Q13395 1621 aaKnown RBP30.37■■■□□ 2.45
PDLIM7-215ENST00000506161 EIF4G3O43432 1585 aaKnown RBP30.33■■■□□ 2.45
PDLIM7-215ENST00000506161 POLA1P09884 1462 aaPredicted RBP30.31■■■□□ 2.44
PDLIM7-215ENST00000506161 RIMBP3CA6NJZ7 1639 aa30.3■■■□□ 2.44
PDLIM7-215ENST00000506161 RIMBP3BA6NNM3 1639 aa30.3■■■□□ 2.44
PDLIM7-215ENST00000506161 RIMBP3Q9UFD9 1639 aa30.3■■■□□ 2.44
PDLIM7-215ENST00000506161 CUX1P39880 1505 aa30.27■■■□□ 2.44
PDLIM7-215ENST00000506161 RAD54L2Q9Y4B4 1467 aa30.24■■■□□ 2.43
PDLIM7-215ENST00000506161 AQRO60306 1485 aaKnown RBP eCLIP30.19■■■□□ 2.426e-10■■■■□ 25.6
PDLIM7-215ENST00000506161 FGD5Q6ZNL6 1462 aa30.19■■■□□ 2.42
PDLIM7-215ENST00000506161 ARHGEF11O15085 1522 aa30.16■■■□□ 2.42
PDLIM7-215ENST00000506161 CHD1O14646 1710 aa30.1■■■□□ 2.41
PDLIM7-215ENST00000506161 SOGA1O94964 1423 aa30.1■■■□□ 2.41
PDLIM7-215ENST00000506161 WDR97A6NE52 1622 aa30.09■■■□□ 2.41
PDLIM7-215ENST00000506161 TDRD9Q8NDG6 1382 aaKnown RBP30.03■■■□□ 2.4
PDLIM7-215ENST00000506161 CYB5RLQ6IPT4 315 aa29.99■■■□□ 2.39
PDLIM7-215ENST00000506161 TRHP20396 242 aaPredicted RBP29.92■■■□□ 2.38
PDLIM7-215ENST00000506161 SYNJ1O43426 1573 aa29.91■■■□□ 2.38
PDLIM7-215ENST00000506161 BIVM-ERCC5R4GMW8 1640 aa29.9■■■□□ 2.38
PDLIM7-215ENST00000506161 PBRM1Q86U86 1689 aa29.89■■■□□ 2.38
PDLIM7-215ENST00000506161 SNAPC4Q5SXM2 1469 aa29.89■■■□□ 2.38
PDLIM7-215ENST00000506161 TOP2BQ02880 1626 aa29.85■■■□□ 2.37
PDLIM7-215ENST00000506161 ABCA5Q8WWZ7 1642 aa29.85■■■□□ 2.37
PDLIM7-215ENST00000506161 ABCA10Q8WWZ4 1543 aa29.82■■■□□ 2.36
PDLIM7-215ENST00000506161 ARAP1Q96P48 1450 aa29.8■■■□□ 2.36
PDLIM7-215ENST00000506161 WRNQ14191 1432 aaPredicted RBP eCLIP29.79■■■□□ 2.36
PDLIM7-215ENST00000506161 GRIN2BQ13224 1484 aa29.79■■■□□ 2.36
PDLIM7-215ENST00000506161 FBLN2P98095 1184 aa29.78■■■□□ 2.36
PDLIM7-215ENST00000506161 GAPVD1Q14C86 1478 aa29.76■■■□□ 2.35
PDLIM7-215ENST00000506161 MAGI1Q96QZ7 1491 aaPredicted RBP29.74■■■□□ 2.35
PDLIM7-215ENST00000506161 CLASP1Q7Z460 1538 aa29.69■■■□□ 2.34
PDLIM7-215ENST00000506161 SYNJ2O15056 1496 aa29.66■■■□□ 2.34
PDLIM7-215ENST00000506161 AEBP2Q6ZN18 517 aaPredicted RBP29.6■■■□□ 2.33
PDLIM7-215ENST00000506161 CHMP7Q8WUX9 453 aaPredicted RBP29.59■■■□□ 2.33
PDLIM7-215ENST00000506161 ADAMTS12P58397 1594 aa29.57■■■□□ 2.32
PDLIM7-215ENST00000506161 GRIN2AQ12879 1464 aa29.45■■■□□ 2.31
PDLIM7-215ENST00000506161 CEP170Q5SW79 1584 aa29.44■■■□□ 2.3
PDLIM7-215ENST00000506161 ERICH3Q5RHP9 1530 aa29.43■■■□□ 2.3
PDLIM7-215ENST00000506161 FHAD1B1AJZ9 1412 aa29.37■■■□□ 2.29
PDLIM7-215ENST00000506161 ERCC6L2Q5T890 1561 aa29.36■■■□□ 2.29
PDLIM7-215ENST00000506161 NUP160Q12769 1436 aa29.35■■■□□ 2.29
PDLIM7-215ENST00000506161 SHROOM2Q13796 1616 aa29.26■■■□□ 2.27
PDLIM7-215ENST00000506161 RUSC2Q8N2Y8 1516 aa29.15■■■□□ 2.26
PDLIM7-215ENST00000506161 IGF1RP08069 1367 aa29.15■■■□□ 2.26
PDLIM7-215ENST00000506161 KIF27Q86VH2 1401 aa29.13■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms