RNA–Protein interactions for RNA: ENST00000506080.5

PTPN20-216, Transcript of protein tyrosine phosphatase, non-receptor type 20, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN20, Length 1,401 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN20-216ENST00000506080 AEBP2Q6ZN18 517 aaPredicted RBP26.87■■□□□ 1.89
PTPN20-216ENST00000506080 CHIC1Q5VXU3 224 aa25.58■■□□□ 1.69
PTPN20-216ENST00000506080 NISCHQ9Y2I1 1504 aa23.35■■□□□ 1.33
PTPN20-216ENST00000506080 SENP3Q9H4L4 574 aaPredicted RBP22.8■■□□□ 1.24
PTPN20-216ENST00000506080 PHF23Q9BUL5 403 aaPredicted RBP22.58■■□□□ 1.21
PTPN20-216ENST00000506080 ABCC9O60706 1549 aa21.37■■□□□ 1.01
PTPN20-216ENST00000506080 FOXD1Q16676 465 aa21.3■■□□□ 1
PTPN20-216ENST00000506080 CCDC180Q9P1Z9 1646 aa21.02■□□□□ 0.96
PTPN20-216ENST00000506080 PLPPR3Q6T4P5 718 aa20.47■□□□□ 0.87
PTPN20-216ENST00000506080 DNAJC5BQ9UF47 199 aa20.3■□□□□ 0.84
PTPN20-216ENST00000506080 RB1CC1Q8TDY2 1594 aa20.16■□□□□ 0.82
PTPN20-216ENST00000506080 PPP6R1Q9UPN7 881 aa20.07■□□□□ 0.8
PTPN20-216ENST00000506080 ADRA2BP18089 450 aa20.01■□□□□ 0.79
PTPN20-216ENST00000506080 NACADO15069 1562 aa19.95■□□□□ 0.78
PTPN20-216ENST00000506080 DCAF8L2P0C7V8 631 aa19.93■□□□□ 0.78
PTPN20-216ENST00000506080 PIAS4Q8N2W9 510 aaPredicted RBP19.92■□□□□ 0.78
PTPN20-216ENST00000506080 PABPN1Q86U42 306 aaKnown RBP eCLIP19.89■□□□□ 0.77
PTPN20-216ENST00000506080 MSH5O43196 834 aa19.8■□□□□ 0.76
PTPN20-216ENST00000506080 UNC13AQ9UPW8 1703 aa19.71■□□□□ 0.75
PTPN20-216ENST00000506080 BICRAQ9NZM4 1560 aa19.6■□□□□ 0.73
PTPN20-216ENST00000506080 MYO15BQ96JP2 1530 aa19.55■□□□□ 0.72
PTPN20-216ENST00000506080 ZCCHC6Q5VYS8 1495 aaKnown RBP19.29■□□□□ 0.68
PTPN20-216ENST00000506080 CECR2Q9BXF3 1484 aa19.26■□□□□ 0.67
PTPN20-216ENST00000506080 CC2D2AQ9P2K1 1620 aa19.26■□□□□ 0.67
PTPN20-216ENST00000506080 SHROOM4Q9ULL8 1493 aa19.25■□□□□ 0.67
PTPN20-216ENST00000506080 DCAF1Q9Y4B6 1507 aa19.23■□□□□ 0.67
PTPN20-216ENST00000506080 SCRIBQ14160 1630 aa19.21■□□□□ 0.67
PTPN20-216ENST00000506080 POTEDQ86YR6 584 aa19.17■□□□□ 0.66
PTPN20-216ENST00000506080 EIF4G1Q04637 1599 aaKnown RBP19.14■□□□□ 0.66
PTPN20-216ENST00000506080 DNAJC5Q9H3Z4 198 aa18.8■□□□□ 0.6
PTPN20-216ENST00000506080 CUX2O14529 1486 aa18.48■□□□□ 0.55
PTPN20-216ENST00000506080 ERCC6Q03468 1493 aa18.46■□□□□ 0.55
PTPN20-216ENST00000506080 NCAPD3P42695 1498 aa18.44■□□□□ 0.54
PTPN20-216ENST00000506080 ATAD2BQ9ULI0 1458 aa18.36■□□□□ 0.53
PTPN20-216ENST00000506080 MAPK8IP2Q13387 824 aaPredicted RBP18.35■□□□□ 0.53
PTPN20-216ENST00000506080 NESP48681 1621 aa18.29■□□□□ 0.52
PTPN20-216ENST00000506080 SMARCA2P51531 1590 aa18.27■□□□□ 0.52
PTPN20-216ENST00000506080 SMARCA4P51532 1647 aa18.27■□□□□ 0.51
PTPN20-216ENST00000506080 HMGXB3Q12766 1538 aa18.26■□□□□ 0.51
PTPN20-216ENST00000506080 SCAF1Q9H7N4 1312 aaKnown RBP18.18■□□□□ 0.5
PTPN20-216ENST00000506080 BAZ1BQ9UIG0 1483 aaKnown RBP18.18■□□□□ 0.5
PTPN20-216ENST00000506080 BAZ1AQ9NRL2 1556 aaPredicted RBP18.13■□□□□ 0.49
PTPN20-216ENST00000506080 DMRT2Q9Y5R5 561 aa18.13■□□□□ 0.49
PTPN20-216ENST00000506080 THOC2Q8NI27 1593 aaKnown RBP18.11■□□□□ 0.49
PTPN20-216ENST00000506080 PEG3Q9GZU2 1588 aa18.06■□□□□ 0.48
PTPN20-216ENST00000506080 LAMC3Q9Y6N6 1575 aa18.06■□□□□ 0.48
PTPN20-216ENST00000506080 MROH2BQ7Z745 1585 aa18.01■□□□□ 0.47
PTPN20-216ENST00000506080 PPP4R3CPQ6ZMV5 832 aa18■□□□□ 0.47
PTPN20-216ENST00000506080 KIF21AQ7Z4S6 1674 aa18■□□□□ 0.47
PTPN20-216ENST00000506080 PDS5BQ9NTI5 1447 aa17.99■□□□□ 0.47
PTPN20-216ENST00000506080 TRIM41Q8WV44 630 aa17.93■□□□□ 0.46
PTPN20-216ENST00000506080 CADPSQ9ULU8 1353 aa17.89■□□□□ 0.45
PTPN20-216ENST00000506080 MRC2Q9UBG0 1479 aa17.85■□□□□ 0.45
PTPN20-216ENST00000506080 WDR62O43379 1518 aa17.79■□□□□ 0.44
PTPN20-216ENST00000506080 WIZO95785 1651 aa17.78■□□□□ 0.44
PTPN20-216ENST00000506080 CEP164Q9UPV0 1460 aa17.73■□□□□ 0.43
PTPN20-216ENST00000506080 FANCD2Q9BXW9 1451 aa17.69■□□□□ 0.42
PTPN20-216ENST00000506080 OSCARQ8IYS5 282 aa17.63■□□□□ 0.41
PTPN20-216ENST00000506080 CFTRP13569 1480 aa17.61■□□□□ 0.41
PTPN20-216ENST00000506080 CNKSR2Q8WXI2 1034 aa17.6■□□□□ 0.41
PTPN20-216ENST00000506080 URB2Q14146 1524 aaKnown RBP17.56■□□□□ 0.4
PTPN20-216ENST00000506080 RSF1Q96T23 1441 aaPredicted RBP17.54■□□□□ 0.4
PTPN20-216ENST00000506080 TOP2AP11388 1531 aaKnown RBP17.51■□□□□ 0.39
PTPN20-216ENST00000506080 HOXD11P31277 338 aaPredicted RBP17.51■□□□□ 0.39
PTPN20-216ENST00000506080 DCAF8L1A6NGE4 600 aa17.41■□□□□ 0.38
PTPN20-216ENST00000506080 RIMBP3CA6NJZ7 1639 aa17.41■□□□□ 0.38
PTPN20-216ENST00000506080 RIMBP3BA6NNM3 1639 aa17.41■□□□□ 0.38
PTPN20-216ENST00000506080 RIMBP3Q9UFD9 1639 aa17.41■□□□□ 0.38
PTPN20-216ENST00000506080 RNF216Q9NWF9 866 aaPredicted RBP17.4■□□□□ 0.38
PTPN20-216ENST00000506080 ZNF608Q9ULD9 1512 aaPredicted RBP17.4■□□□□ 0.38
PTPN20-216ENST00000506080 PRDM2Q13029 1718 aa17.37■□□□□ 0.37
PTPN20-216ENST00000506080 IFT140Q96RY7 1462 aa17.37■□□□□ 0.37
PTPN20-216ENST00000506080 CCDC88BA6NC98 1476 aa17.35■□□□□ 0.37
PTPN20-216ENST00000506080 ARHGEF11O15085 1522 aa17.33■□□□□ 0.37
PTPN20-216ENST00000506080 TOPBP1Q92547 1522 aa17.32■□□□□ 0.36
PTPN20-216ENST00000506080 NCBP3Q53F19 620 aaKnown RBP17.3■□□□□ 0.36
PTPN20-216ENST00000506080 EIF4G3O43432 1585 aaKnown RBP17.27■□□□□ 0.35
PTPN20-216ENST00000506080 CYB5RLQ6IPT4 315 aa17.26■□□□□ 0.35
PTPN20-216ENST00000506080 ABCC8Q09428 1581 aa17.22■□□□□ 0.35
PTPN20-216ENST00000506080 DNMBPQ6XZF7 1577 aa17.22■□□□□ 0.35
PTPN20-216ENST00000506080 AQRO60306 1485 aaKnown RBP eCLIP17.22■□□□□ 0.35
PTPN20-216ENST00000506080 FBLN2P98095 1184 aa17.2■□□□□ 0.34
PTPN20-216ENST00000506080 CHD1O14646 1710 aa17.19■□□□□ 0.34
PTPN20-216ENST00000506080 TRHP20396 242 aaPredicted RBP17.18■□□□□ 0.34
PTPN20-216ENST00000506080 TARBP1Q13395 1621 aaKnown RBP17.16■□□□□ 0.34
PTPN20-216ENST00000506080 ARAP1Q96P48 1450 aa17.15■□□□□ 0.34
PTPN20-216ENST00000506080 POLA1P09884 1462 aaPredicted RBP17.12■□□□□ 0.33
PTPN20-216ENST00000506080 NPM3O75607 178 aaKnown RBP17.12■□□□□ 0.33
PTPN20-216ENST00000506080 RAD54L2Q9Y4B4 1467 aa17.1■□□□□ 0.33
PTPN20-216ENST00000506080 TDRD9Q8NDG6 1382 aaKnown RBP17.08■□□□□ 0.33
PTPN20-216ENST00000506080 SOGA1O94964 1423 aa17.06■□□□□ 0.32
PTPN20-216ENST00000506080 SNAPC4Q5SXM2 1469 aa17.02■□□□□ 0.32
PTPN20-216ENST00000506080 FGD5Q6ZNL6 1462 aa16.99■□□□□ 0.31
PTPN20-216ENST00000506080 CHMP7Q8WUX9 453 aaPredicted RBP16.99■□□□□ 0.31
PTPN20-216ENST00000506080 CLASP1Q7Z460 1538 aa16.97■□□□□ 0.31
PTPN20-216ENST00000506080 CACNB1Q02641 598 aaPredicted RBP16.96■□□□□ 0.3
PTPN20-216ENST00000506080 RNF39Q9H2S5 420 aa16.96■□□□□ 0.3
PTPN20-216ENST00000506080 SYNJ1O43426 1573 aa16.95■□□□□ 0.3
PTPN20-216ENST00000506080 KCNA4P22459 653 aa16.95■□□□□ 0.3
PTPN20-216ENST00000506080 CUX1P39880 1505 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 105.3 ms