RNA–Protein interactions for RNA: ENST00000505496.6

CTSB-205, Transcript of cathepsin B, humanhuman

TSL 4

Gene CTSB, Length 540 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSB-205ENST00000505496 NISCHQ9Y2I1 1504 aa21.25■□□□□ 0.99
CTSB-205ENST00000505496 CCDC180Q9P1Z9 1646 aa18.85■□□□□ 0.61
CTSB-205ENST00000505496 ABCC9O60706 1549 aa18.42■□□□□ 0.54
CTSB-205ENST00000505496 NACADO15069 1562 aa17.75■□□□□ 0.43
CTSB-205ENST00000505496 RB1CC1Q8TDY2 1594 aa17.74■□□□□ 0.43
CTSB-205ENST00000505496 MYO15BQ96JP2 1530 aa17.72■□□□□ 0.43
CTSB-205ENST00000505496 ZCCHC6Q5VYS8 1495 aaKnown RBP17.72■□□□□ 0.43
CTSB-205ENST00000505496 DCAF8L2P0C7V8 631 aa17.65■□□□□ 0.42
CTSB-205ENST00000505496 DCAF1Q9Y4B6 1507 aa17.63■□□□□ 0.41
CTSB-205ENST00000505496 UNC13AQ9UPW8 1703 aa17.26■□□□□ 0.35
CTSB-205ENST00000505496 BICRAQ9NZM4 1560 aa17.23■□□□□ 0.35
CTSB-205ENST00000505496 PABPN1Q86U42 306 aaKnown RBP eCLIP17.23■□□□□ 0.35
CTSB-205ENST00000505496 SCRIBQ14160 1630 aa17.16■□□□□ 0.34
CTSB-205ENST00000505496 SHROOM4Q9ULL8 1493 aa17.11■□□□□ 0.33
CTSB-205ENST00000505496 DNAJC5BQ9UF47 199 aa16.96■□□□□ 0.31
CTSB-205ENST00000505496 EIF4G1Q04637 1599 aaKnown RBP16.76■□□□□ 0.27
CTSB-205ENST00000505496 CC2D2AQ9P2K1 1620 aa16.67■□□□□ 0.26
CTSB-205ENST00000505496 CECR2Q9BXF3 1484 aa16.58■□□□□ 0.24
CTSB-205ENST00000505496 BAZ1AQ9NRL2 1556 aaPredicted RBP16.46■□□□□ 0.23
CTSB-205ENST00000505496 SMARCA4P51532 1647 aa16.45■□□□□ 0.22
CTSB-205ENST00000505496 NCAPD3P42695 1498 aa16.42■□□□□ 0.22
CTSB-205ENST00000505496 ATAD2BQ9ULI0 1458 aa16.41■□□□□ 0.22
CTSB-205ENST00000505496 SMARCA2P51531 1590 aa16.36■□□□□ 0.21
CTSB-205ENST00000505496 MROH2BQ7Z745 1585 aa16.36■□□□□ 0.21
CTSB-205ENST00000505496 PEG3Q9GZU2 1588 aa16.35■□□□□ 0.21
CTSB-205ENST00000505496 HMGXB3Q12766 1538 aa16.31■□□□□ 0.2
CTSB-205ENST00000505496 BAZ1BQ9UIG0 1483 aaKnown RBP16.23■□□□□ 0.19
CTSB-205ENST00000505496 RSF1Q96T23 1441 aaPredicted RBP16.21■□□□□ 0.19
CTSB-205ENST00000505496 WIZO95785 1651 aa16.14■□□□□ 0.17
CTSB-205ENST00000505496 TOP2AP11388 1531 aaKnown RBP16.01■□□□□ 0.15
CTSB-205ENST00000505496 NESP48681 1621 aa15.96■□□□□ 0.15
CTSB-205ENST00000505496 CADPSQ9ULU8 1353 aa15.93■□□□□ 0.14
CTSB-205ENST00000505496 LAMC3Q9Y6N6 1575 aa15.92■□□□□ 0.14
CTSB-205ENST00000505496 ERCC6Q03468 1493 aa15.86■□□□□ 0.13
CTSB-205ENST00000505496 PDS5BQ9NTI5 1447 aa15.85■□□□□ 0.13
CTSB-205ENST00000505496 CFTRP13569 1480 aa15.84■□□□□ 0.13
CTSB-205ENST00000505496 CCDC88BA6NC98 1476 aa15.84■□□□□ 0.13
CTSB-205ENST00000505496 CUX2O14529 1486 aa15.76■□□□□ 0.11
CTSB-205ENST00000505496 THOC2Q8NI27 1593 aaKnown RBP15.71■□□□□ 0.11
CTSB-205ENST00000505496 SUPT5HO00267 1087 aaKnown RBP15.71■□□□□ 0.11
CTSB-205ENST00000505496 FANCD2Q9BXW9 1451 aa15.71■□□□□ 0.1
CTSB-205ENST00000505496 KIF21AQ7Z4S6 1674 aa15.7■□□□□ 0.1
CTSB-205ENST00000505496 CEP164Q9UPV0 1460 aa15.67■□□□□ 0.1
CTSB-205ENST00000505496 MRC2Q9UBG0 1479 aa15.66■□□□□ 0.1
CTSB-205ENST00000505496 WDR62O43379 1518 aa15.63■□□□□ 0.09
CTSB-205ENST00000505496 PRDM2Q13029 1718 aa15.59■□□□□ 0.09
CTSB-205ENST00000505496 URB2Q14146 1524 aaKnown RBP15.56■□□□□ 0.08
CTSB-205ENST00000505496 ABCC8Q09428 1581 aa15.47■□□□□ 0.07
CTSB-205ENST00000505496 TOPBP1Q92547 1522 aa15.46■□□□□ 0.07
CTSB-205ENST00000505496 DNMBPQ6XZF7 1577 aa15.43■□□□□ 0.06
CTSB-205ENST00000505496 IFT140Q96RY7 1462 aa15.38■□□□□ 0.05
CTSB-205ENST00000505496 CUX1P39880 1505 aa15.35■□□□□ 0.05
CTSB-205ENST00000505496 POLA1P09884 1462 aaPredicted RBP15.34■□□□□ 0.05
CTSB-205ENST00000505496 ZNF608Q9ULD9 1512 aaPredicted RBP15.29■□□□□ 0.04
CTSB-205ENST00000505496 TARBP1Q13395 1621 aaKnown RBP15.28■□□□□ 0.04
CTSB-205ENST00000505496 FGD5Q6ZNL6 1462 aa15.28■□□□□ 0.04
CTSB-205ENST00000505496 DNAJC5Q9H3Z4 198 aa15.28■□□□□ 0.04
CTSB-205ENST00000505496 SOGA1O94964 1423 aa15.26■□□□□ 0.03
CTSB-205ENST00000505496 RAD54L2Q9Y4B4 1467 aa15.26■□□□□ 0.03
CTSB-205ENST00000505496 WRNQ14191 1432 aaPredicted RBP eCLIP15.26■□□□□ 0.03
CTSB-205ENST00000505496 TOP2BQ02880 1626 aa15.21■□□□□ 0.03
CTSB-205ENST00000505496 AQRO60306 1485 aaKnown RBP eCLIP15.2■□□□□ 0.022e-8■■■■■ 40.1
CTSB-205ENST00000505496 SYNJ1O43426 1573 aa15.19■□□□□ 0.02
CTSB-205ENST00000505496 EIF4G3O43432 1585 aaKnown RBP15.19■□□□□ 0.02
CTSB-205ENST00000505496 WDR97A6NE52 1622 aa15.19■□□□□ 0.02
CTSB-205ENST00000505496 BIVM-ERCC5R4GMW8 1640 aa15.19■□□□□ 0.02
CTSB-205ENST00000505496 TDRD9Q8NDG6 1382 aaKnown RBP15.18■□□□□ 0.02
CTSB-205ENST00000505496 ABCA10Q8WWZ4 1543 aa15.17■□□□□ 0.02
CTSB-205ENST00000505496 OSCARQ8IYS5 282 aa15.1■□□□□ 0.01
CTSB-205ENST00000505496 GRIN2BQ13224 1484 aa15.09■□□□□ 0.01
CTSB-205ENST00000505496 GAPVD1Q14C86 1478 aa15.09■□□□□ 0.01
CTSB-205ENST00000505496 ABCA5Q8WWZ7 1642 aa15.07■□□□□ 0
CTSB-205ENST00000505496 MAGI1Q96QZ7 1491 aaPredicted RBP15.06■□□□□ 0
CTSB-205ENST00000505496 SNAPC4Q5SXM2 1469 aa15.05■□□□□ -0
CTSB-205ENST00000505496 SYNJ2O15056 1496 aa15□□□□□ -0.01
CTSB-205ENST00000505496 ERICH3Q5RHP9 1530 aa14.98□□□□□ -0.01
CTSB-205ENST00000505496 PBRM1Q86U86 1689 aa14.97□□□□□ -0.01
CTSB-205ENST00000505496 CHMP7Q8WUX9 453 aaPredicted RBP14.97□□□□□ -0.01
CTSB-205ENST00000505496 FBLN2P98095 1184 aa14.96□□□□□ -0.01
CTSB-205ENST00000505496 CHD1O14646 1710 aa14.95□□□□□ -0.02
CTSB-205ENST00000505496 KIF27Q86VH2 1401 aa14.94□□□□□ -0.02
CTSB-205ENST00000505496 FHAD1B1AJZ9 1412 aa14.93□□□□□ -0.02
CTSB-205ENST00000505496 IGF1RP08069 1367 aa14.92□□□□□ -0.02
CTSB-205ENST00000505496 ADAMTS12P58397 1594 aa14.92□□□□□ -0.02
CTSB-205ENST00000505496 GRIN2AQ12879 1464 aa14.89□□□□□ -0.03
CTSB-205ENST00000505496 CLASP1Q7Z460 1538 aa14.88□□□□□ -0.03
CTSB-205ENST00000505496 NUP160Q12769 1436 aa14.87□□□□□ -0.03
CTSB-205ENST00000505496 TRIM41Q8WV44 630 aa14.87□□□□□ -0.03
CTSB-205ENST00000505496 ARHGEF11O15085 1522 aa14.83□□□□□ -0.04
CTSB-205ENST00000505496 CARMIL1Q5VZK9 1371 aa14.8□□□□□ -0.04
CTSB-205ENST00000505496 CEP170Q5SW79 1584 aa14.8□□□□□ -0.04
CTSB-205ENST00000505496 RIMBP3CA6NJZ7 1639 aa14.8□□□□□ -0.04
CTSB-205ENST00000505496 RIMBP3BA6NNM3 1639 aa14.8□□□□□ -0.04
CTSB-205ENST00000505496 RIMBP3Q9UFD9 1639 aa14.8□□□□□ -0.04
CTSB-205ENST00000505496 CUL7Q14999 1698 aa14.8□□□□□ -0.04
CTSB-205ENST00000505496 RUSC2Q8N2Y8 1516 aa14.78□□□□□ -0.04
CTSB-205ENST00000505496 CHIC1Q5VXU3 224 aa14.74□□□□□ -0.05
CTSB-205ENST00000505496 ARAP1Q96P48 1450 aa14.73□□□□□ -0.05
CTSB-205ENST00000505496 KIAA0586Q9BVV6 1533 aa14.71□□□□□ -0.05
CTSB-205ENST00000505496 SHROOM2Q13796 1616 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms