RNA–Protein interactions for RNA: ENST00000504841.6

NPIPB3-203, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

APPRIS P1 TSL 1 (best)

Gene NPIPB3, Length 1,254 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-203ENST00000504841 NISCHQ9Y2I1 1504 aa17.52■□□□□ 0.39
NPIPB3-203ENST00000504841 AEBP2Q6ZN18 517 aaPredicted RBP16.16■□□□□ 0.18
NPIPB3-203ENST00000504841 ABCC9O60706 1549 aa16.08■□□□□ 0.16
NPIPB3-203ENST00000504841 CCDC180Q9P1Z9 1646 aa15.79■□□□□ 0.12
NPIPB3-203ENST00000504841 CHIC1Q5VXU3 224 aa15.73■□□□□ 0.11
NPIPB3-203ENST00000504841 DNAJC5BQ9UF47 199 aa15.21■□□□□ 0.03
NPIPB3-203ENST00000504841 RB1CC1Q8TDY2 1594 aa15.15■□□□□ 0.02
NPIPB3-203ENST00000504841 NACADO15069 1562 aa14.98□□□□□ -0.01
NPIPB3-203ENST00000504841 DCAF8L2P0C7V8 631 aa14.96□□□□□ -0.01
NPIPB3-203ENST00000504841 PABPN1Q86U42 306 aaKnown RBP eCLIP14.93□□□□□ -0.02
NPIPB3-203ENST00000504841 UNC13AQ9UPW8 1703 aa14.81□□□□□ -0.04
NPIPB3-203ENST00000504841 BICRAQ9NZM4 1560 aa14.71□□□□□ -0.05
NPIPB3-203ENST00000504841 MYO15BQ96JP2 1530 aa14.66□□□□□ -0.06
NPIPB3-203ENST00000504841 ZCCHC6Q5VYS8 1495 aaKnown RBP14.49□□□□□ -0.09
NPIPB3-203ENST00000504841 CC2D2AQ9P2K1 1620 aa14.48□□□□□ -0.09
NPIPB3-203ENST00000504841 CECR2Q9BXF3 1484 aa14.47□□□□□ -0.09
NPIPB3-203ENST00000504841 SCRIBQ14160 1630 aa14.46□□□□□ -0.09
NPIPB3-203ENST00000504841 SHROOM4Q9ULL8 1493 aa14.45□□□□□ -0.1
NPIPB3-203ENST00000504841 DCAF1Q9Y4B6 1507 aa14.41□□□□□ -0.1
NPIPB3-203ENST00000504841 EIF4G1Q04637 1599 aaKnown RBP14.39□□□□□ -0.11
NPIPB3-203ENST00000504841 DNAJC5Q9H3Z4 198 aa14.09□□□□□ -0.15
NPIPB3-203ENST00000504841 ERCC6Q03468 1493 aa13.9□□□□□ -0.18
NPIPB3-203ENST00000504841 CUX2O14529 1486 aa13.87□□□□□ -0.19
NPIPB3-203ENST00000504841 NCAPD3P42695 1498 aa13.81□□□□□ -0.2
NPIPB3-203ENST00000504841 PHF23Q9BUL5 403 aaPredicted RBP13.79□□□□□ -0.2
NPIPB3-203ENST00000504841 SENP3Q9H4L4 574 aaPredicted RBP13.78□□□□□ -0.2
NPIPB3-203ENST00000504841 ATAD2BQ9ULI0 1458 aa13.78□□□□□ -0.2
NPIPB3-203ENST00000504841 NESP48681 1621 aa13.74□□□□□ -0.21
NPIPB3-203ENST00000504841 SMARCA2P51531 1590 aa13.73□□□□□ -0.21
NPIPB3-203ENST00000504841 SMARCA4P51532 1647 aa13.72□□□□□ -0.21
NPIPB3-203ENST00000504841 HMGXB3Q12766 1538 aa13.71□□□□□ -0.21
NPIPB3-203ENST00000504841 BAZ1BQ9UIG0 1483 aaKnown RBP13.66□□□□□ -0.22
NPIPB3-203ENST00000504841 THOC2Q8NI27 1593 aaKnown RBP13.62□□□□□ -0.23
NPIPB3-203ENST00000504841 BAZ1AQ9NRL2 1556 aaPredicted RBP13.62□□□□□ -0.23
NPIPB3-203ENST00000504841 LAMC3Q9Y6N6 1575 aa13.56□□□□□ -0.24
NPIPB3-203ENST00000504841 PEG3Q9GZU2 1588 aa13.54□□□□□ -0.24
NPIPB3-203ENST00000504841 KIF21AQ7Z4S6 1674 aa13.54□□□□□ -0.24
NPIPB3-203ENST00000504841 MROH2BQ7Z745 1585 aa13.53□□□□□ -0.24
NPIPB3-203ENST00000504841 PDS5BQ9NTI5 1447 aa13.49□□□□□ -0.25
NPIPB3-203ENST00000504841 TRIM41Q8WV44 630 aa13.49□□□□□ -0.25
NPIPB3-203ENST00000504841 MRC2Q9UBG0 1479 aa13.42□□□□□ -0.26
NPIPB3-203ENST00000504841 CADPSQ9ULU8 1353 aa13.41□□□□□ -0.26
NPIPB3-203ENST00000504841 WDR62O43379 1518 aa13.38□□□□□ -0.27
NPIPB3-203ENST00000504841 WIZO95785 1651 aa13.36□□□□□ -0.27
NPIPB3-203ENST00000504841 CEP164Q9UPV0 1460 aa13.34□□□□□ -0.27
NPIPB3-203ENST00000504841 FANCD2Q9BXW9 1451 aa13.29□□□□□ -0.28
NPIPB3-203ENST00000504841 OSCARQ8IYS5 282 aa13.21□□□□□ -0.29
NPIPB3-203ENST00000504841 CFTRP13569 1480 aa13.21□□□□□ -0.3
NPIPB3-203ENST00000504841 URB2Q14146 1524 aaKnown RBP13.19□□□□□ -0.3
NPIPB3-203ENST00000504841 TOP2AP11388 1531 aaKnown RBP13.17□□□□□ -0.3
NPIPB3-203ENST00000504841 RSF1Q96T23 1441 aaPredicted RBP13.14□□□□□ -0.31
NPIPB3-203ENST00000504841 RIMBP3CA6NJZ7 1639 aa13.1□□□□□ -0.31
NPIPB3-203ENST00000504841 RIMBP3BA6NNM3 1639 aa13.1□□□□□ -0.31
NPIPB3-203ENST00000504841 RIMBP3Q9UFD9 1639 aa13.1□□□□□ -0.31
NPIPB3-203ENST00000504841 ZNF608Q9ULD9 1512 aaPredicted RBP13.08□□□□□ -0.32
NPIPB3-203ENST00000504841 PRDM2Q13029 1718 aa13.07□□□□□ -0.32
NPIPB3-203ENST00000504841 IFT140Q96RY7 1462 aa13.05□□□□□ -0.32
NPIPB3-203ENST00000504841 ARHGEF11O15085 1522 aa13.03□□□□□ -0.32
NPIPB3-203ENST00000504841 TOPBP1Q92547 1522 aa13.01□□□□□ -0.33
NPIPB3-203ENST00000504841 EIF4G3O43432 1585 aaKnown RBP13□□□□□ -0.33
NPIPB3-203ENST00000504841 CCDC88BA6NC98 1476 aa13□□□□□ -0.33
NPIPB3-203ENST00000504841 CYB5RLQ6IPT4 315 aa12.96□□□□□ -0.33
NPIPB3-203ENST00000504841 DNMBPQ6XZF7 1577 aa12.94□□□□□ -0.34
NPIPB3-203ENST00000504841 CHD1O14646 1710 aa12.94□□□□□ -0.34
NPIPB3-203ENST00000504841 FBLN2P98095 1184 aa12.93□□□□□ -0.34
NPIPB3-203ENST00000504841 AQRO60306 1485 aaKnown RBP eCLIP12.92□□□□□ -0.34
NPIPB3-203ENST00000504841 TRHP20396 242 aaPredicted RBP12.92□□□□□ -0.34
NPIPB3-203ENST00000504841 ABCC8Q09428 1581 aa12.92□□□□□ -0.34
NPIPB3-203ENST00000504841 ARAP1Q96P48 1450 aa12.9□□□□□ -0.34
NPIPB3-203ENST00000504841 TARBP1Q13395 1621 aaKnown RBP12.88□□□□□ -0.35
NPIPB3-203ENST00000504841 POLA1P09884 1462 aaPredicted RBP12.86□□□□□ -0.35
NPIPB3-203ENST00000504841 RAD54L2Q9Y4B4 1467 aa12.84□□□□□ -0.35
NPIPB3-203ENST00000504841 TDRD9Q8NDG6 1382 aaKnown RBP12.82□□□□□ -0.36
NPIPB3-203ENST00000504841 SNAPC4Q5SXM2 1469 aa12.81□□□□□ -0.36
NPIPB3-203ENST00000504841 SOGA1O94964 1423 aa12.8□□□□□ -0.36
NPIPB3-203ENST00000504841 FGD5Q6ZNL6 1462 aa12.78□□□□□ -0.36
NPIPB3-203ENST00000504841 FOXD1Q16676 465 aa12.77□□□□□ -0.37
NPIPB3-203ENST00000504841 CHMP7Q8WUX9 453 aaPredicted RBP12.76□□□□□ -0.37
NPIPB3-203ENST00000504841 CLASP1Q7Z460 1538 aa12.76□□□□□ -0.37
NPIPB3-203ENST00000504841 SYNJ1O43426 1573 aa12.75□□□□□ -0.37
NPIPB3-203ENST00000504841 PLPPR3Q6T4P5 718 aa12.74□□□□□ -0.37
NPIPB3-203ENST00000504841 MAGI1Q96QZ7 1491 aaPredicted RBP12.72□□□□□ -0.37
NPIPB3-203ENST00000504841 CUX1P39880 1505 aa12.72□□□□□ -0.37
NPIPB3-203ENST00000504841 GRIN2BQ13224 1484 aa12.72□□□□□ -0.37
NPIPB3-203ENST00000504841 WDR97A6NE52 1622 aa12.71□□□□□ -0.37
NPIPB3-203ENST00000504841 SYNJ2O15056 1496 aa12.69□□□□□ -0.38
NPIPB3-203ENST00000504841 PBRM1Q86U86 1689 aa12.67□□□□□ -0.38
NPIPB3-203ENST00000504841 GAPVD1Q14C86 1478 aa12.65□□□□□ -0.38
NPIPB3-203ENST00000504841 ABCA5Q8WWZ7 1642 aa12.59□□□□□ -0.39
NPIPB3-203ENST00000504841 ABCA10Q8WWZ4 1543 aa12.58□□□□□ -0.4
NPIPB3-203ENST00000504841 ERCC6L2Q5T890 1561 aa12.58□□□□□ -0.4
NPIPB3-203ENST00000504841 GRIN2AQ12879 1464 aa12.55□□□□□ -0.4
NPIPB3-203ENST00000504841 ADAMTS12P58397 1594 aa12.53□□□□□ -0.4
NPIPB3-203ENST00000504841 CEP170Q5SW79 1584 aa12.53□□□□□ -0.4
NPIPB3-203ENST00000504841 NUP160Q12769 1436 aa12.5□□□□□ -0.41
NPIPB3-203ENST00000504841 WRNQ14191 1432 aaPredicted RBP eCLIP12.5□□□□□ -0.41
NPIPB3-203ENST00000504841 SUPT5HO00267 1087 aaKnown RBP12.49□□□□□ -0.41
NPIPB3-203ENST00000504841 FHAD1B1AJZ9 1412 aa12.47□□□□□ -0.41
NPIPB3-203ENST00000504841 SHROOM2Q13796 1616 aa12.46□□□□□ -0.41
NPIPB3-203ENST00000504841 TOP2BQ02880 1626 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms