RNA–Protein interactions for RNA: ENST00000504443.6

COL6A4P2-202, Transcript of collagen type VI alpha 4 pseudogene 2, humanhuman

BASIC

Gene COL6A4P2, Length 2,753 nt, Biotype transcribed unitary pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A4P2-202ENST00000504443 NISCHQ9Y2I1 1504 aa26.51■■□□□ 1.83
COL6A4P2-202ENST00000504443 HRCP23327 699 aa24.17■■□□□ 1.46
COL6A4P2-202ENST00000504443 PPARGC1BQ86YN6 1023 aaKnown RBP23.93■■□□□ 1.42
COL6A4P2-202ENST00000504443 PCGF6Q9BYE7 350 aa23.71■■□□□ 1.39
COL6A4P2-202ENST00000504443 SHROOM4Q9ULL8 1493 aa23.59■■□□□ 1.37
COL6A4P2-202ENST00000504443 PELP1Q8IZL8 1130 aaKnown RBP23.55■■□□□ 1.36
COL6A4P2-202ENST00000504443 SUPT5HO00267 1087 aaKnown RBP23.52■■□□□ 1.35
COL6A4P2-202ENST00000504443 MYO15BQ96JP2 1530 aa23.39■■□□□ 1.33
COL6A4P2-202ENST00000504443 SCAF1Q9H7N4 1312 aaKnown RBP23.15■■□□□ 1.3
COL6A4P2-202ENST00000504443 CHIC1Q5VXU3 224 aa23.12■■□□□ 1.29
COL6A4P2-202ENST00000504443 CCDC180Q9P1Z9 1646 aa22.75■■□□□ 1.23
COL6A4P2-202ENST00000504443 LOC105371045A0A1W2PR82 267 aa22.74■■□□□ 1.23
COL6A4P2-202ENST00000504443 DCAF8L2P0C7V8 631 aa22.72■■□□□ 1.23
COL6A4P2-202ENST00000504443 DCAF1Q9Y4B6 1507 aa22.71■■□□□ 1.23
COL6A4P2-202ENST00000504443 TRIM26Q12899 539 aaPredicted RBP22.65■■□□□ 1.22
COL6A4P2-202ENST00000504443 MYT1Q01538 1121 aa22.63■■□□□ 1.21
COL6A4P2-202ENST00000504443 ZEB1P37275 1124 aaPredicted RBP22.43■■□□□ 1.18
COL6A4P2-202ENST00000504443 NEUROD1Q13562 356 aa22.43■■□□□ 1.18
COL6A4P2-202ENST00000504443 ACIN1Q9UKV3 1341 aaKnown RBP22.39■■□□□ 1.18
COL6A4P2-202ENST00000504443 ZCCHC6Q5VYS8 1495 aaKnown RBP22.34■■□□□ 1.17
COL6A4P2-202ENST00000504443 GTF3C3Q9Y5Q9 886 aa22.33■■□□□ 1.17
COL6A4P2-202ENST00000504443 ABCC9O60706 1549 aa22.2■■□□□ 1.14
COL6A4P2-202ENST00000504443 CENPBP07199 599 aaPredicted RBP21.99■■□□□ 1.11
COL6A4P2-202ENST00000504443 EHMT2Q96KQ7 1210 aa21.91■■□□□ 1.1
COL6A4P2-202ENST00000504443 DIEXFQ68CQ4 756 aaKnown RBP21.89■■□□□ 1.09
COL6A4P2-202ENST00000504443 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.87■■□□□ 1.09
COL6A4P2-202ENST00000504443 FAM9AQ8IZU1 332 aaPredicted RBP21.8■■□□□ 1.08
COL6A4P2-202ENST00000504443 YTHDC1Q96MU7 727 aaKnown RBP21.77■■□□□ 1.08
COL6A4P2-202ENST00000504443 CCER1Q8TC90 406 aaPredicted RBP21.76■■□□□ 1.07
COL6A4P2-202ENST00000504443 TRIM41Q8WV44 630 aa21.63■■□□□ 1.05
COL6A4P2-202ENST00000504443 BCL11AQ9H165 835 aa21.5■■□□□ 1.03
COL6A4P2-202ENST00000504443 SCRIBQ14160 1630 aa21.47■■□□□ 1.03
COL6A4P2-202ENST00000504443 TTBK1Q5TCY1 1321 aaPredicted RBP21.41■■□□□ 1.02
COL6A4P2-202ENST00000504443 MIER1Q8N108 512 aa21.36■■□□□ 1.01
COL6A4P2-202ENST00000504443 ZNF316A6NFI3 1004 aaPredicted RBP21.32■■□□□ 1
COL6A4P2-202ENST00000504443 NACADO15069 1562 aa21.32■■□□□ 1
COL6A4P2-202ENST00000504443 ANP32EQ9BTT0 268 aa21.25■□□□□ 0.99
COL6A4P2-202ENST00000504443 RSF1Q96T23 1441 aaPredicted RBP21.24■□□□□ 0.99
COL6A4P2-202ENST00000504443 RB1CC1Q8TDY2 1594 aa21.22■□□□□ 0.99
COL6A4P2-202ENST00000504443 PABPN1Q86U42 306 aaKnown RBP eCLIP21.2■□□□□ 0.98
COL6A4P2-202ENST00000504443 CSRNP3Q8WYN3 585 aa21.16■□□□□ 0.98
COL6A4P2-202ENST00000504443 TSHZ2Q9NRE2 1034 aa21.12■□□□□ 0.97
COL6A4P2-202ENST00000504443 SUPT16HQ9Y5B9 1047 aaKnown RBP21.11■□□□□ 0.97
COL6A4P2-202ENST00000504443 CECR2Q9BXF3 1484 aa20.89■□□□□ 0.94
COL6A4P2-202ENST00000504443 UNC13AQ9UPW8 1703 aa20.88■□□□□ 0.93
COL6A4P2-202ENST00000504443 BCANQ96GW7 911 aa20.83■□□□□ 0.93
COL6A4P2-202ENST00000504443 PRKCSHP14314 528 aaPredicted RBP20.81■□□□□ 0.92
COL6A4P2-202ENST00000504443 WRNQ14191 1432 aaPredicted RBP eCLIP20.81■□□□□ 0.92
COL6A4P2-202ENST00000504443 HNRNPUL2Q1KMD3 747 aaKnown RBP20.78■□□□□ 0.92
COL6A4P2-202ENST00000504443 CEP162Q5TB80 1403 aa20.76■□□□□ 0.91
COL6A4P2-202ENST00000504443 BICRAQ9NZM4 1560 aa20.7■□□□□ 0.9
COL6A4P2-202ENST00000504443 CLSPNQ9HAW4 1339 aa20.7■□□□□ 0.9
COL6A4P2-202ENST00000504443 MROH2BQ7Z745 1585 aa20.66■□□□□ 0.9
COL6A4P2-202ENST00000504443 RBM19Q9Y4C8 960 aaKnown RBP20.59■□□□□ 0.89
COL6A4P2-202ENST00000504443 KCNH8Q96L42 1107 aa20.58■□□□□ 0.88
COL6A4P2-202ENST00000504443 CCDC88BA6NC98 1476 aa20.56■□□□□ 0.88
COL6A4P2-202ENST00000504443 FKBP8Q14318 412 aa20.56■□□□□ 0.88
COL6A4P2-202ENST00000504443 WIZO95785 1651 aa20.54■□□□□ 0.88
COL6A4P2-202ENST00000504443 TNIKQ9UKE5 1360 aa20.54■□□□□ 0.88
COL6A4P2-202ENST00000504443 ABCC8Q09428 1581 aa20.54■□□□□ 0.88
COL6A4P2-202ENST00000504443 UBTFP17480 764 aaKnown RBP20.53■□□□□ 0.88
COL6A4P2-202ENST00000504443 SOGA1O94964 1423 aa20.52■□□□□ 0.88
COL6A4P2-202ENST00000504443 EIF4G1Q04637 1599 aaKnown RBP20.51■□□□□ 0.87
COL6A4P2-202ENST00000504443 ITGAEP38570 1179 aa20.5■□□□□ 0.87
COL6A4P2-202ENST00000504443 MSH5O43196 834 aa20.49■□□□□ 0.87
COL6A4P2-202ENST00000504443 RUSC2Q8N2Y8 1516 aa20.43■□□□□ 0.86
COL6A4P2-202ENST00000504443 BAZ1AQ9NRL2 1556 aaPredicted RBP20.39■□□□□ 0.85
COL6A4P2-202ENST00000504443 SMARCA4P51532 1647 aa20.34■□□□□ 0.85
COL6A4P2-202ENST00000504443 DHX57Q6P158 1386 aaKnown RBP20.26■□□□□ 0.83
COL6A4P2-202ENST00000504443 ERICH6Q7L0X2 663 aa20.26■□□□□ 0.83
COL6A4P2-202ENST00000504443 ANO8Q9HCE9 1232 aaPredicted RBP20.26■□□□□ 0.83
COL6A4P2-202ENST00000504443 GOLGA3Q08378 1498 aa20.25■□□□□ 0.83
COL6A4P2-202ENST00000504443 NEFLP07196 543 aa20.24■□□□□ 0.83
COL6A4P2-202ENST00000504443 RANGAP1P46060 587 aaPredicted RBP20.19■□□□□ 0.82
COL6A4P2-202ENST00000504443 TRIM52Q96A61 297 aa20.19■□□□□ 0.82
COL6A4P2-202ENST00000504443 DEKP35659 375 aaKnown RBP20.18■□□□□ 0.82
COL6A4P2-202ENST00000504443 CLIP1P30622 1438 aa20.17■□□□□ 0.82
COL6A4P2-202ENST00000504443 EEA1Q15075 1411 aa20.16■□□□□ 0.82
COL6A4P2-202ENST00000504443 APLP2Q06481 763 aa20.14■□□□□ 0.81
COL6A4P2-202ENST00000504443 VPS8Q8N3P4 1428 aa20.12■□□□□ 0.81
COL6A4P2-202ENST00000504443 DDX10Q13206 875 aaKnown RBP20.11■□□□□ 0.81
COL6A4P2-202ENST00000504443 ATAD2BQ9ULI0 1458 aa20.1■□□□□ 0.81
COL6A4P2-202ENST00000504443 IRX6P78412 446 aaPredicted RBP20.09■□□□□ 0.81
COL6A4P2-202ENST00000504443 FANCIQ9NVI1 1328 aa20.06■□□□□ 0.8
COL6A4P2-202ENST00000504443 SMARCA2P51531 1590 aa20.03■□□□□ 0.8
COL6A4P2-202ENST00000504443 TOP2AP11388 1531 aaKnown RBP20.03■□□□□ 0.8
COL6A4P2-202ENST00000504443 SALL2Q9Y467 1007 aaPredicted RBP20.02■□□□□ 0.8
COL6A4P2-202ENST00000504443 CEP164Q9UPV0 1460 aa20■□□□□ 0.79
COL6A4P2-202ENST00000504443 NBR1Q14596 966 aa20■□□□□ 0.79
COL6A4P2-202ENST00000504443 BAZ1BQ9UIG0 1483 aaKnown RBP20■□□□□ 0.79
COL6A4P2-202ENST00000504443 CDK11AQ9UQ88 783 aaPredicted RBP20■□□□□ 0.79
COL6A4P2-202ENST00000504443 CCDC136Q96JN2 1154 aa20■□□□□ 0.79
COL6A4P2-202ENST00000504443 HIRIP3Q9BW71 556 aaPredicted RBP19.98■□□□□ 0.79
COL6A4P2-202ENST00000504443 KANK4Q5T7N3 995 aaPredicted RBP19.95■□□□□ 0.78
COL6A4P2-202ENST00000504443 DNAJC5BQ9UF47 199 aa19.95■□□□□ 0.78
COL6A4P2-202ENST00000504443 KIF21BO75037 1637 aa19.94■□□□□ 0.78
COL6A4P2-202ENST00000504443 RAPGEF2Q9Y4G8 1499 aa19.92■□□□□ 0.78
COL6A4P2-202ENST00000504443 PEG3Q9GZU2 1588 aa19.88■□□□□ 0.77
COL6A4P2-202ENST00000504443 RTN4Q9NQC3 1192 aaKnown RBP19.86■□□□□ 0.77
COL6A4P2-202ENST00000504443 MYT1LQ9UL68 1186 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms