RNA–Protein interactions for RNA: ENST00000504380.1

PDLIM7-212, Transcript of PDZ and LIM domain 7, humanhuman

TSL 2

Gene PDLIM7, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-212ENST00000504380 NISCHQ9Y2I1 1504 aa31.57■■■□□ 2.64
PDLIM7-212ENST00000504380 CCDC180Q9P1Z9 1646 aa27.85■■■□□ 2.05
PDLIM7-212ENST00000504380 ABCC9O60706 1549 aa27.09■■□□□ 1.93
PDLIM7-212ENST00000504380 DCAF8L2P0C7V8 631 aa26.41■■□□□ 1.82
PDLIM7-212ENST00000504380 ZCCHC6Q5VYS8 1495 aaKnown RBP26.36■■□□□ 1.81
PDLIM7-212ENST00000504380 NACADO15069 1562 aa26.12■■□□□ 1.77
PDLIM7-212ENST00000504380 RB1CC1Q8TDY2 1594 aa26.08■■□□□ 1.77
PDLIM7-212ENST00000504380 DNAJC5BQ9UF47 199 aa26.08■■□□□ 1.77
PDLIM7-212ENST00000504380 DCAF1Q9Y4B6 1507 aa26.04■■□□□ 1.76
PDLIM7-212ENST00000504380 MYO15BQ96JP2 1530 aa26■■□□□ 1.75
PDLIM7-212ENST00000504380 SCRIBQ14160 1630 aa25.58■■□□□ 1.69
PDLIM7-212ENST00000504380 UNC13AQ9UPW8 1703 aa25.57■■□□□ 1.68
PDLIM7-212ENST00000504380 PABPN1Q86U42 306 aaKnown RBP eCLIP25.43■■□□□ 1.661e-8■■■■■ 32.2
PDLIM7-212ENST00000504380 BICRAQ9NZM4 1560 aa25.35■■□□□ 1.65
PDLIM7-212ENST00000504380 SHROOM4Q9ULL8 1493 aa25.32■■□□□ 1.64
PDLIM7-212ENST00000504380 CECR2Q9BXF3 1484 aa24.64■■□□□ 1.54
PDLIM7-212ENST00000504380 EIF4G1Q04637 1599 aaKnown RBP24.63■■□□□ 1.53
PDLIM7-212ENST00000504380 CC2D2AQ9P2K1 1620 aa24.47■■□□□ 1.51
PDLIM7-212ENST00000504380 DNAJC5Q9H3Z4 198 aa24.47■■□□□ 1.51
PDLIM7-212ENST00000504380 SMARCA4P51532 1647 aa24.43■■□□□ 1.5
PDLIM7-212ENST00000504380 BAZ1AQ9NRL2 1556 aaPredicted RBP24.41■■□□□ 1.5
PDLIM7-212ENST00000504380 MROH2BQ7Z745 1585 aa24.4■■□□□ 1.5
PDLIM7-212ENST00000504380 ATAD2BQ9ULI0 1458 aa24.22■■□□□ 1.47
PDLIM7-212ENST00000504380 RSF1Q96T23 1441 aaPredicted RBP24.21■■□□□ 1.47
PDLIM7-212ENST00000504380 WIZO95785 1651 aa24.17■■□□□ 1.46
PDLIM7-212ENST00000504380 SMARCA2P51531 1590 aa24.16■■□□□ 1.46
PDLIM7-212ENST00000504380 PEG3Q9GZU2 1588 aa24.12■■□□□ 1.45
PDLIM7-212ENST00000504380 NCAPD3P42695 1498 aa24.11■■□□□ 1.45
PDLIM7-212ENST00000504380 BAZ1BQ9UIG0 1483 aaKnown RBP24.03■■□□□ 1.44
PDLIM7-212ENST00000504380 HMGXB3Q12766 1538 aa24■■□□□ 1.43
PDLIM7-212ENST00000504380 SUPT5HO00267 1087 aaKnown RBP23.98■■□□□ 1.43
PDLIM7-212ENST00000504380 TOP2AP11388 1531 aaKnown RBP23.85■■□□□ 1.41
PDLIM7-212ENST00000504380 CCDC88BA6NC98 1476 aa23.62■■□□□ 1.37
PDLIM7-212ENST00000504380 CUX2O14529 1486 aa23.62■■□□□ 1.37
PDLIM7-212ENST00000504380 NESP48681 1621 aa23.55■■□□□ 1.36
PDLIM7-212ENST00000504380 CADPSQ9ULU8 1353 aa23.46■■□□□ 1.35
PDLIM7-212ENST00000504380 LAMC3Q9Y6N6 1575 aa23.41■■□□□ 1.34
PDLIM7-212ENST00000504380 CFTRP13569 1480 aa23.37■■□□□ 1.33
PDLIM7-212ENST00000504380 ERCC6Q03468 1493 aa23.35■■□□□ 1.33
PDLIM7-212ENST00000504380 PDS5BQ9NTI5 1447 aa23.25■■□□□ 1.31
PDLIM7-212ENST00000504380 KIF21AQ7Z4S6 1674 aa23.24■■□□□ 1.31
PDLIM7-212ENST00000504380 FANCD2Q9BXW9 1451 aa23.21■■□□□ 1.31
PDLIM7-212ENST00000504380 PRDM2Q13029 1718 aa23.2■■□□□ 1.3
PDLIM7-212ENST00000504380 CEP164Q9UPV0 1460 aa23.13■■□□□ 1.29
PDLIM7-212ENST00000504380 THOC2Q8NI27 1593 aaKnown RBP23.04■■□□□ 1.28
PDLIM7-212ENST00000504380 MRC2Q9UBG0 1479 aa23.03■■□□□ 1.28
PDLIM7-212ENST00000504380 URB2Q14146 1524 aaKnown RBP22.98■■□□□ 1.27
PDLIM7-212ENST00000504380 TRIM41Q8WV44 630 aa22.95■■□□□ 1.26
PDLIM7-212ENST00000504380 WDR62O43379 1518 aa22.92■■□□□ 1.26
PDLIM7-212ENST00000504380 ABCC8Q09428 1581 aa22.91■■□□□ 1.26
PDLIM7-212ENST00000504380 TOPBP1Q92547 1522 aa22.88■■□□□ 1.25
PDLIM7-212ENST00000504380 CUX1P39880 1505 aa22.86■■□□□ 1.25
PDLIM7-212ENST00000504380 DNMBPQ6XZF7 1577 aa22.85■■□□□ 1.25
PDLIM7-212ENST00000504380 WRNQ14191 1432 aaPredicted RBP eCLIP22.81■■□□□ 1.24
PDLIM7-212ENST00000504380 SYNJ1O43426 1573 aa22.76■■□□□ 1.23
PDLIM7-212ENST00000504380 FGD5Q6ZNL6 1462 aa22.72■■□□□ 1.23
PDLIM7-212ENST00000504380 POLA1P09884 1462 aaPredicted RBP22.7■■□□□ 1.22
PDLIM7-212ENST00000504380 TOP2BQ02880 1626 aa22.69■■□□□ 1.22
PDLIM7-212ENST00000504380 BIVM-ERCC5R4GMW8 1640 aa22.69■■□□□ 1.22
PDLIM7-212ENST00000504380 RAD54L2Q9Y4B4 1467 aa22.66■■□□□ 1.22
PDLIM7-212ENST00000504380 SOGA1O94964 1423 aa22.64■■□□□ 1.21
PDLIM7-212ENST00000504380 IFT140Q96RY7 1462 aa22.61■■□□□ 1.21
PDLIM7-212ENST00000504380 TARBP1Q13395 1621 aaKnown RBP22.59■■□□□ 1.21
PDLIM7-212ENST00000504380 ZNF608Q9ULD9 1512 aaPredicted RBP22.57■■□□□ 1.2
PDLIM7-212ENST00000504380 CHIC1Q5VXU3 224 aa22.53■■□□□ 1.2
PDLIM7-212ENST00000504380 TDRD9Q8NDG6 1382 aaKnown RBP22.51■■□□□ 1.19
PDLIM7-212ENST00000504380 AQRO60306 1485 aaKnown RBP eCLIP22.49■■□□□ 1.192e-9■■■■■ 47.9
PDLIM7-212ENST00000504380 OSCARQ8IYS5 282 aa22.49■■□□□ 1.19
PDLIM7-212ENST00000504380 WDR97A6NE52 1622 aa22.47■■□□□ 1.19
PDLIM7-212ENST00000504380 ABCA10Q8WWZ4 1543 aa22.47■■□□□ 1.19
PDLIM7-212ENST00000504380 EIF4G3O43432 1585 aaKnown RBP22.44■■□□□ 1.18
PDLIM7-212ENST00000504380 GAPVD1Q14C86 1478 aa22.36■■□□□ 1.17
PDLIM7-212ENST00000504380 ABCA5Q8WWZ7 1642 aa22.35■■□□□ 1.17
PDLIM7-212ENST00000504380 RUSC2Q8N2Y8 1516 aa22.31■■□□□ 1.16
PDLIM7-212ENST00000504380 PBRM1Q86U86 1689 aa22.3■■□□□ 1.16
PDLIM7-212ENST00000504380 GRIN2BQ13224 1484 aa22.29■■□□□ 1.16
PDLIM7-212ENST00000504380 KIF27Q86VH2 1401 aa22.28■■□□□ 1.16
PDLIM7-212ENST00000504380 SNAPC4Q5SXM2 1469 aa22.26■■□□□ 1.15
PDLIM7-212ENST00000504380 FBLN2P98095 1184 aa22.19■■□□□ 1.14
PDLIM7-212ENST00000504380 FAM9AQ8IZU1 332 aaPredicted RBP22.19■■□□□ 1.14
PDLIM7-212ENST00000504380 IGF1RP08069 1367 aa22.19■■□□□ 1.14
PDLIM7-212ENST00000504380 ERICH3Q5RHP9 1530 aa22.18■■□□□ 1.14
PDLIM7-212ENST00000504380 MAGI1Q96QZ7 1491 aaPredicted RBP22.16■■□□□ 1.14
PDLIM7-212ENST00000504380 ADAMTS12P58397 1594 aa22.12■■□□□ 1.13
PDLIM7-212ENST00000504380 CHD1O14646 1710 aa22.12■■□□□ 1.13
PDLIM7-212ENST00000504380 CHMP7Q8WUX9 453 aaPredicted RBP22.12■■□□□ 1.13
PDLIM7-212ENST00000504380 RIMBP3CA6NJZ7 1639 aa22.12■■□□□ 1.13
PDLIM7-212ENST00000504380 RIMBP3BA6NNM3 1639 aa22.12■■□□□ 1.13
PDLIM7-212ENST00000504380 RIMBP3Q9UFD9 1639 aa22.12■■□□□ 1.13
PDLIM7-212ENST00000504380 SYNJ2O15056 1496 aa22.09■■□□□ 1.13
PDLIM7-212ENST00000504380 FHAD1B1AJZ9 1412 aa22.09■■□□□ 1.13
PDLIM7-212ENST00000504380 CSRNP3Q8WYN3 585 aa22.06■■□□□ 1.12
PDLIM7-212ENST00000504380 CARMIL1Q5VZK9 1371 aa22.06■■□□□ 1.12
PDLIM7-212ENST00000504380 CUL7Q14999 1698 aa22.04■■□□□ 1.12
PDLIM7-212ENST00000504380 ARHGEF11O15085 1522 aa22.03■■□□□ 1.12
PDLIM7-212ENST00000504380 EEA1Q15075 1411 aa22.03■■□□□ 1.12
PDLIM7-212ENST00000504380 GRIN2AQ12879 1464 aa22.02■■□□□ 1.12
PDLIM7-212ENST00000504380 CYB5RLQ6IPT4 315 aa21.96■■□□□ 1.11
PDLIM7-212ENST00000504380 EHMT2Q96KQ7 1210 aa21.96■■□□□ 1.11
PDLIM7-212ENST00000504380 PRXQ9BXM0 1461 aa21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 163.5 ms