RNA–Protein interactions for RNA: ENST00000504315.1

HOXC6-203, Transcript of homeobox C6, humanhuman

TSL 3

Gene HOXC6, Length 538 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC6-203ENST00000504315 NISCHQ9Y2I1 1504 aa33.97■■■■□ 3.03
HOXC6-203ENST00000504315 CCDC180Q9P1Z9 1646 aa30.44■■■□□ 2.46
HOXC6-203ENST00000504315 ABCC9O60706 1549 aa29.86■■■□□ 2.37
HOXC6-203ENST00000504315 RB1CC1Q8TDY2 1594 aa28.7■■■□□ 2.18
HOXC6-203ENST00000504315 NACADO15069 1562 aa28.62■■■□□ 2.17
HOXC6-203ENST00000504315 MYO15BQ96JP2 1530 aa28.4■■■□□ 2.14
HOXC6-203ENST00000504315 ZCCHC6Q5VYS8 1495 aaKnown RBP28.26■■■□□ 2.11
HOXC6-203ENST00000504315 DCAF8L2P0C7V8 631 aa28.25■■■□□ 2.11
HOXC6-203ENST00000504315 UNC13AQ9UPW8 1703 aa28.2■■■□□ 2.1
HOXC6-203ENST00000504315 DCAF1Q9Y4B6 1507 aa28.16■■■□□ 2.1
HOXC6-203ENST00000504315 BICRAQ9NZM4 1560 aa27.87■■■□□ 2.05
HOXC6-203ENST00000504315 PABPN1Q86U42 306 aaKnown RBP eCLIP27.77■■■□□ 2.04
HOXC6-203ENST00000504315 DNAJC5BQ9UF47 199 aa27.63■■■□□ 2.01
HOXC6-203ENST00000504315 SCRIBQ14160 1630 aa27.63■■■□□ 2.01
HOXC6-203ENST00000504315 SHROOM4Q9ULL8 1493 aa27.57■■■□□ 2
HOXC6-203ENST00000504315 EIF4G1Q04637 1599 aaKnown RBP27.13■■□□□ 1.93
HOXC6-203ENST00000504315 CC2D2AQ9P2K1 1620 aa27.09■■□□□ 1.93
HOXC6-203ENST00000504315 CECR2Q9BXF3 1484 aa26.88■■□□□ 1.89
HOXC6-203ENST00000504315 SMARCA4P51532 1647 aa26.46■■□□□ 1.83
HOXC6-203ENST00000504315 NCAPD3P42695 1498 aa26.37■■□□□ 1.81
HOXC6-203ENST00000504315 BAZ1AQ9NRL2 1556 aaPredicted RBP26.36■■□□□ 1.81
HOXC6-203ENST00000504315 ATAD2BQ9ULI0 1458 aa26.33■■□□□ 1.81
HOXC6-203ENST00000504315 SMARCA2P51531 1590 aa26.31■■□□□ 1.8
HOXC6-203ENST00000504315 HMGXB3Q12766 1538 aa26.27■■□□□ 1.8
HOXC6-203ENST00000504315 PEG3Q9GZU2 1588 aa26.24■■□□□ 1.79
HOXC6-203ENST00000504315 MROH2BQ7Z745 1585 aa26.16■■□□□ 1.78
HOXC6-203ENST00000504315 BAZ1BQ9UIG0 1483 aaKnown RBP26.07■■□□□ 1.76
HOXC6-203ENST00000504315 WIZO95785 1651 aa25.9■■□□□ 1.74
HOXC6-203ENST00000504315 NESP48681 1621 aa25.78■■□□□ 1.72
HOXC6-203ENST00000504315 LAMC3Q9Y6N6 1575 aa25.76■■□□□ 1.71
HOXC6-203ENST00000504315 ERCC6Q03468 1493 aa25.74■■□□□ 1.71
HOXC6-203ENST00000504315 RSF1Q96T23 1441 aaPredicted RBP25.73■■□□□ 1.71
HOXC6-203ENST00000504315 CUX2O14529 1486 aa25.66■■□□□ 1.7
HOXC6-203ENST00000504315 TOP2AP11388 1531 aaKnown RBP25.6■■□□□ 1.69
HOXC6-203ENST00000504315 KIF21AQ7Z4S6 1674 aa25.58■■□□□ 1.69
HOXC6-203ENST00000504315 THOC2Q8NI27 1593 aaKnown RBP25.56■■□□□ 1.68
HOXC6-203ENST00000504315 CADPSQ9ULU8 1353 aa25.55■■□□□ 1.68
HOXC6-203ENST00000504315 PDS5BQ9NTI5 1447 aa25.51■■□□□ 1.67
HOXC6-203ENST00000504315 CFTRP13569 1480 aa25.38■■□□□ 1.65
HOXC6-203ENST00000504315 PRDM2Q13029 1718 aa25.35■■□□□ 1.65
HOXC6-203ENST00000504315 MRC2Q9UBG0 1479 aa25.29■■□□□ 1.64
HOXC6-203ENST00000504315 WDR62O43379 1518 aa25.27■■□□□ 1.64
HOXC6-203ENST00000504315 FANCD2Q9BXW9 1451 aa25.26■■□□□ 1.63
HOXC6-203ENST00000504315 CEP164Q9UPV0 1460 aa25.26■■□□□ 1.63
HOXC6-203ENST00000504315 CCDC88BA6NC98 1476 aa25.24■■□□□ 1.63
HOXC6-203ENST00000504315 DNAJC5Q9H3Z4 198 aa25.11■■□□□ 1.61
HOXC6-203ENST00000504315 URB2Q14146 1524 aaKnown RBP25.04■■□□□ 1.6
HOXC6-203ENST00000504315 TOPBP1Q92547 1522 aa24.85■■□□□ 1.57
HOXC6-203ENST00000504315 ABCC8Q09428 1581 aa24.84■■□□□ 1.57
HOXC6-203ENST00000504315 DNMBPQ6XZF7 1577 aa24.83■■□□□ 1.57
HOXC6-203ENST00000504315 IFT140Q96RY7 1462 aa24.74■■□□□ 1.55
HOXC6-203ENST00000504315 SUPT5HO00267 1087 aaKnown RBP24.7■■□□□ 1.54
HOXC6-203ENST00000504315 TARBP1Q13395 1621 aaKnown RBP24.66■■□□□ 1.54
HOXC6-203ENST00000504315 ZNF608Q9ULD9 1512 aaPredicted RBP24.65■■□□□ 1.54
HOXC6-203ENST00000504315 POLA1P09884 1462 aaPredicted RBP24.62■■□□□ 1.53
HOXC6-203ENST00000504315 EIF4G3O43432 1585 aaKnown RBP24.6■■□□□ 1.53
HOXC6-203ENST00000504315 CUX1P39880 1505 aa24.57■■□□□ 1.52
HOXC6-203ENST00000504315 FGD5Q6ZNL6 1462 aa24.5■■□□□ 1.51
HOXC6-203ENST00000504315 WDR97A6NE52 1622 aa24.49■■□□□ 1.51
HOXC6-203ENST00000504315 RAD54L2Q9Y4B4 1467 aa24.46■■□□□ 1.51
HOXC6-203ENST00000504315 SOGA1O94964 1423 aa24.44■■□□□ 1.5
HOXC6-203ENST00000504315 AQRO60306 1485 aaKnown RBP eCLIP24.44■■□□□ 1.5
HOXC6-203ENST00000504315 OSCARQ8IYS5 282 aa24.43■■□□□ 1.5
HOXC6-203ENST00000504315 CHD1O14646 1710 aa24.4■■□□□ 1.5
HOXC6-203ENST00000504315 BIVM-ERCC5R4GMW8 1640 aa24.35■■□□□ 1.49
HOXC6-203ENST00000504315 TOP2BQ02880 1626 aa24.32■■□□□ 1.48
HOXC6-203ENST00000504315 TDRD9Q8NDG6 1382 aaKnown RBP24.31■■□□□ 1.48
HOXC6-203ENST00000504315 PBRM1Q86U86 1689 aa24.29■■□□□ 1.48
HOXC6-203ENST00000504315 ABCA10Q8WWZ4 1543 aa24.29■■□□□ 1.48
HOXC6-203ENST00000504315 SYNJ1O43426 1573 aa24.27■■□□□ 1.48
HOXC6-203ENST00000504315 ABCA5Q8WWZ7 1642 aa24.27■■□□□ 1.48
HOXC6-203ENST00000504315 WRNQ14191 1432 aaPredicted RBP eCLIP24.26■■□□□ 1.47
HOXC6-203ENST00000504315 GRIN2BQ13224 1484 aa24.24■■□□□ 1.47
HOXC6-203ENST00000504315 SNAPC4Q5SXM2 1469 aa24.24■■□□□ 1.47
HOXC6-203ENST00000504315 MAGI1Q96QZ7 1491 aaPredicted RBP24.24■■□□□ 1.47
HOXC6-203ENST00000504315 GAPVD1Q14C86 1478 aa24.2■■□□□ 1.47
HOXC6-203ENST00000504315 RIMBP3CA6NJZ7 1639 aa24.2■■□□□ 1.46
HOXC6-203ENST00000504315 RIMBP3BA6NNM3 1639 aa24.2■■□□□ 1.46
HOXC6-203ENST00000504315 RIMBP3Q9UFD9 1639 aa24.2■■□□□ 1.46
HOXC6-203ENST00000504315 ARHGEF11O15085 1522 aa24.14■■□□□ 1.45
HOXC6-203ENST00000504315 SYNJ2O15056 1496 aa24.13■■□□□ 1.45
HOXC6-203ENST00000504315 CLASP1Q7Z460 1538 aa24.09■■□□□ 1.45
HOXC6-203ENST00000504315 FBLN2P98095 1184 aa24.08■■□□□ 1.45
HOXC6-203ENST00000504315 TRIM41Q8WV44 630 aa24.06■■□□□ 1.44
HOXC6-203ENST00000504315 ADAMTS12P58397 1594 aa24.03■■□□□ 1.44
HOXC6-203ENST00000504315 CHMP7Q8WUX9 453 aaPredicted RBP24.02■■□□□ 1.44
HOXC6-203ENST00000504315 ERICH3Q5RHP9 1530 aa24■■□□□ 1.43
HOXC6-203ENST00000504315 GRIN2AQ12879 1464 aa23.94■■□□□ 1.42
HOXC6-203ENST00000504315 ARAP1Q96P48 1450 aa23.92■■□□□ 1.42
HOXC6-203ENST00000504315 FHAD1B1AJZ9 1412 aa23.91■■□□□ 1.42
HOXC6-203ENST00000504315 NUP160Q12769 1436 aa23.87■■□□□ 1.41
HOXC6-203ENST00000504315 CEP170Q5SW79 1584 aa23.86■■□□□ 1.41
HOXC6-203ENST00000504315 CYB5RLQ6IPT4 315 aa23.79■■□□□ 1.4
HOXC6-203ENST00000504315 SHROOM2Q13796 1616 aa23.79■■□□□ 1.4
HOXC6-203ENST00000504315 CUL7Q14999 1698 aa23.76■■□□□ 1.39
HOXC6-203ENST00000504315 KIF27Q86VH2 1401 aa23.76■■□□□ 1.39
HOXC6-203ENST00000504315 IGF1RP08069 1367 aa23.69■■□□□ 1.38
HOXC6-203ENST00000504315 ERCC6L2Q5T890 1561 aa23.69■■□□□ 1.38
HOXC6-203ENST00000504315 RUSC2Q8N2Y8 1516 aa23.69■■□□□ 1.38
HOXC6-203ENST00000504315 KIAA0586Q9BVV6 1533 aa23.54■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms