RNA–Protein interactions for RNA: ENST00000503868.5

PTCD2-207, Transcript of pentatricopeptide repeat domain 2, humanhuman

TSL 2 BASIC

Gene PTCD2, Length 1,653 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD2-207ENST00000503868 NISCHQ9Y2I1 1504 aa31.41■■■□□ 2.62
PTCD2-207ENST00000503868 CCDC180Q9P1Z9 1646 aa27.53■■■□□ 2
PTCD2-207ENST00000503868 ZCCHC6Q5VYS8 1495 aaKnown RBP26.33■■□□□ 1.8
PTCD2-207ENST00000503868 ABCC9O60706 1549 aa26.16■■□□□ 1.78
PTCD2-207ENST00000503868 DCAF1Q9Y4B6 1507 aa26.02■■□□□ 1.76
PTCD2-207ENST00000503868 DCAF8L2P0C7V8 631 aa25.89■■□□□ 1.73
PTCD2-207ENST00000503868 MYO15BQ96JP2 1530 aa25.81■■□□□ 1.72
PTCD2-207ENST00000503868 NACADO15069 1562 aa25.68■■□□□ 1.7
PTCD2-207ENST00000503868 RB1CC1Q8TDY2 1594 aa25.5■■□□□ 1.67
PTCD2-207ENST00000503868 SHROOM4Q9ULL8 1493 aa25.31■■□□□ 1.64
PTCD2-207ENST00000503868 SCRIBQ14160 1630 aa25.19■■□□□ 1.62
PTCD2-207ENST00000503868 UNC13AQ9UPW8 1703 aa25.02■■□□□ 1.6
PTCD2-207ENST00000503868 BICRAQ9NZM4 1560 aa24.77■■□□□ 1.56
PTCD2-207ENST00000503868 PABPN1Q86U42 306 aaKnown RBP eCLIP24.6■■□□□ 1.53
PTCD2-207ENST00000503868 CECR2Q9BXF3 1484 aa24.4■■□□□ 1.5
PTCD2-207ENST00000503868 BAZ1AQ9NRL2 1556 aaPredicted RBP24.26■■□□□ 1.47
PTCD2-207ENST00000503868 RSF1Q96T23 1441 aaPredicted RBP24.25■■□□□ 1.47
PTCD2-207ENST00000503868 SUPT5HO00267 1087 aaKnown RBP24.24■■□□□ 1.47
PTCD2-207ENST00000503868 MROH2BQ7Z745 1585 aa24.24■■□□□ 1.47
PTCD2-207ENST00000503868 SMARCA4P51532 1647 aa24.19■■□□□ 1.46
PTCD2-207ENST00000503868 WIZO95785 1651 aa24.02■■□□□ 1.44
PTCD2-207ENST00000503868 EIF4G1Q04637 1599 aaKnown RBP24.01■■□□□ 1.43
PTCD2-207ENST00000503868 PEG3Q9GZU2 1588 aa23.95■■□□□ 1.42
PTCD2-207ENST00000503868 ATAD2BQ9ULI0 1458 aa23.85■■□□□ 1.41
PTCD2-207ENST00000503868 SMARCA2P51531 1590 aa23.82■■□□□ 1.4
PTCD2-207ENST00000503868 TOP2AP11388 1531 aaKnown RBP23.77■■□□□ 1.4
PTCD2-207ENST00000503868 NCAPD3P42695 1498 aa23.71■■□□□ 1.39
PTCD2-207ENST00000503868 CC2D2AQ9P2K1 1620 aa23.71■■□□□ 1.39
PTCD2-207ENST00000503868 BAZ1BQ9UIG0 1483 aaKnown RBP23.66■■□□□ 1.38
PTCD2-207ENST00000503868 HMGXB3Q12766 1538 aa23.65■■□□□ 1.38
PTCD2-207ENST00000503868 CCDC88BA6NC98 1476 aa23.52■■□□□ 1.36
PTCD2-207ENST00000503868 DNAJC5BQ9UF47 199 aa23.33■■□□□ 1.33
PTCD2-207ENST00000503868 CHIC1Q5VXU3 224 aa23.15■■□□□ 1.3
PTCD2-207ENST00000503868 CFTRP13569 1480 aa23.1■■□□□ 1.29
PTCD2-207ENST00000503868 CADPSQ9ULU8 1353 aa23.06■■□□□ 1.28
PTCD2-207ENST00000503868 PRDM2Q13029 1718 aa23■■□□□ 1.27
PTCD2-207ENST00000503868 LAMC3Q9Y6N6 1575 aa22.94■■□□□ 1.26
PTCD2-207ENST00000503868 ABCC8Q09428 1581 aa22.92■■□□□ 1.26
PTCD2-207ENST00000503868 NESP48681 1621 aa22.91■■□□□ 1.26
PTCD2-207ENST00000503868 TRIM41Q8WV44 630 aa22.85■■□□□ 1.25
PTCD2-207ENST00000503868 WRNQ14191 1432 aaPredicted RBP eCLIP22.81■■□□□ 1.24
PTCD2-207ENST00000503868 FANCD2Q9BXW9 1451 aa22.78■■□□□ 1.24
PTCD2-207ENST00000503868 SYNJ1O43426 1573 aa22.74■■□□□ 1.23
PTCD2-207ENST00000503868 PDS5BQ9NTI5 1447 aa22.73■■□□□ 1.23
PTCD2-207ENST00000503868 TOP2BQ02880 1626 aa22.7■■□□□ 1.22
PTCD2-207ENST00000503868 BIVM-ERCC5R4GMW8 1640 aa22.69■■□□□ 1.22
PTCD2-207ENST00000503868 CUX1P39880 1505 aa22.67■■□□□ 1.22
PTCD2-207ENST00000503868 KIF21AQ7Z4S6 1674 aa22.66■■□□□ 1.22
PTCD2-207ENST00000503868 CEP164Q9UPV0 1460 aa22.65■■□□□ 1.22
PTCD2-207ENST00000503868 DNMBPQ6XZF7 1577 aa22.55■■□□□ 1.2
PTCD2-207ENST00000503868 URB2Q14146 1524 aaKnown RBP22.52■■□□□ 1.2
PTCD2-207ENST00000503868 TOPBP1Q92547 1522 aa22.52■■□□□ 1.2
PTCD2-207ENST00000503868 FGD5Q6ZNL6 1462 aa22.45■■□□□ 1.18
PTCD2-207ENST00000503868 MRC2Q9UBG0 1479 aa22.45■■□□□ 1.18
PTCD2-207ENST00000503868 SOGA1O94964 1423 aa22.44■■□□□ 1.18
PTCD2-207ENST00000503868 ERCC6Q03468 1493 aa22.43■■□□□ 1.18
PTCD2-207ENST00000503868 POLA1P09884 1462 aaPredicted RBP22.39■■□□□ 1.17
PTCD2-207ENST00000503868 RUSC2Q8N2Y8 1516 aa22.39■■□□□ 1.17
PTCD2-207ENST00000503868 EEA1Q15075 1411 aa22.37■■□□□ 1.17
PTCD2-207ENST00000503868 FAM9AQ8IZU1 332 aaPredicted RBP22.37■■□□□ 1.17
PTCD2-207ENST00000503868 WDR62O43379 1518 aa22.37■■□□□ 1.17
PTCD2-207ENST00000503868 THOC2Q8NI27 1593 aaKnown RBP22.36■■□□□ 1.17
PTCD2-207ENST00000503868 RAD54L2Q9Y4B4 1467 aa22.3■■□□□ 1.16
PTCD2-207ENST00000503868 ABCA10Q8WWZ4 1543 aa22.27■■□□□ 1.16
PTCD2-207ENST00000503868 CSRNP3Q8WYN3 585 aa22.26■■□□□ 1.15
PTCD2-207ENST00000503868 KIF27Q86VH2 1401 aa22.26■■□□□ 1.15
PTCD2-207ENST00000503868 WDR97A6NE52 1622 aa22.25■■□□□ 1.15
PTCD2-207ENST00000503868 CUX2O14529 1486 aa22.24■■□□□ 1.15
PTCD2-207ENST00000503868 TARBP1Q13395 1621 aaKnown RBP22.24■■□□□ 1.15
PTCD2-207ENST00000503868 LOC105371045A0A1W2PR82 267 aa22.22■■□□□ 1.15
PTCD2-207ENST00000503868 IFT140Q96RY7 1462 aa22.15■■□□□ 1.14
PTCD2-207ENST00000503868 ABCA5Q8WWZ7 1642 aa22.12■■□□□ 1.13
PTCD2-207ENST00000503868 IGF1RP08069 1367 aa22.11■■□□□ 1.13
PTCD2-207ENST00000503868 KIF21BO75037 1637 aa22.1■■□□□ 1.13
PTCD2-207ENST00000503868 TDRD9Q8NDG6 1382 aaKnown RBP22.09■■□□□ 1.13
PTCD2-207ENST00000503868 PRXQ9BXM0 1461 aa22.08■■□□□ 1.12
PTCD2-207ENST00000503868 GAPVD1Q14C86 1478 aa22.06■■□□□ 1.12
PTCD2-207ENST00000503868 GOLGA3Q08378 1498 aa22.03■■□□□ 1.12
PTCD2-207ENST00000503868 ZNF608Q9ULD9 1512 aaPredicted RBP22.02■■□□□ 1.12
PTCD2-207ENST00000503868 ERICH3Q5RHP9 1530 aa22.01■■□□□ 1.11
PTCD2-207ENST00000503868 EHMT2Q96KQ7 1210 aa22.01■■□□□ 1.11
PTCD2-207ENST00000503868 AQRO60306 1485 aaKnown RBP eCLIP22■■□□□ 1.11
PTCD2-207ENST00000503868 RAPGEF2Q9Y4G8 1499 aa22■■□□□ 1.11
PTCD2-207ENST00000503868 CARMIL1Q5VZK9 1371 aa21.97■■□□□ 1.11
PTCD2-207ENST00000503868 PBRM1Q86U86 1689 aa21.97■■□□□ 1.11
PTCD2-207ENST00000503868 CUL7Q14999 1698 aa21.97■■□□□ 1.11
PTCD2-207ENST00000503868 EIF4G3O43432 1585 aaKnown RBP21.95■■□□□ 1.1
PTCD2-207ENST00000503868 TNIKQ9UKE5 1360 aa21.94■■□□□ 1.1
PTCD2-207ENST00000503868 GRIN2BQ13224 1484 aa21.92■■□□□ 1.1
PTCD2-207ENST00000503868 UBTFP17480 764 aaKnown RBP21.89■■□□□ 1.1
PTCD2-207ENST00000503868 ADAMTS12P58397 1594 aa21.83■■□□□ 1.08
PTCD2-207ENST00000503868 FHAD1B1AJZ9 1412 aa21.82■■□□□ 1.08
PTCD2-207ENST00000503868 SNAPC4Q5SXM2 1469 aa21.79■■□□□ 1.08
PTCD2-207ENST00000503868 MAGI1Q96QZ7 1491 aaPredicted RBP21.78■■□□□ 1.08
PTCD2-207ENST00000503868 CEP162Q5TB80 1403 aa21.76■■□□□ 1.07
PTCD2-207ENST00000503868 SYNJ2O15056 1496 aa21.69■■□□□ 1.06
PTCD2-207ENST00000503868 CTTNBP2Q8WZ74 1663 aa21.69■■□□□ 1.06
PTCD2-207ENST00000503868 GRIN2AQ12879 1464 aa21.66■■□□□ 1.06
PTCD2-207ENST00000503868 CLIP1P30622 1438 aa21.65■■□□□ 1.06
PTCD2-207ENST00000503868 CHMP7Q8WUX9 453 aaPredicted RBP21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 201.5 ms