RNA–Protein interactions for RNA: ENST00000503004.5

CLDND1-208, Transcript of claudin domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDND1, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-208ENST00000503004 NISCHQ9Y2I1 1504 aa10.62□□□□□ -0.71
CLDND1-208ENST00000503004 CHIC1Q5VXU3 224 aa9.32□□□□□ -0.92
CLDND1-208ENST00000503004 SHROOM4Q9ULL8 1493 aa9.13□□□□□ -0.95
CLDND1-208ENST00000503004 SLC24A1O60721 1099 aa9.01□□□□□ -0.97
CLDND1-208ENST00000503004 CCDC180Q9P1Z9 1646 aa8.98□□□□□ -0.97
CLDND1-208ENST00000503004 ZCCHC6Q5VYS8 1495 aaKnown RBP8.97□□□□□ -0.97
CLDND1-208ENST00000503004 DCAF8L2P0C7V8 631 aa8.95□□□□□ -0.98
CLDND1-208ENST00000503004 SUPT5HO00267 1087 aaKnown RBP8.94□□□□□ -0.98
CLDND1-208ENST00000503004 PELP1Q8IZL8 1130 aaKnown RBP8.83□□□□□ -1
CLDND1-208ENST00000503004 AEBP2Q6ZN18 517 aaPredicted RBP8.71□□□□□ -1.02
CLDND1-208ENST00000503004 DCAF1Q9Y4B6 1507 aa8.66□□□□□ -1.02
CLDND1-208ENST00000503004 MYT1Q01538 1121 aa8.61□□□□□ -1.03
CLDND1-208ENST00000503004 EHMT2Q96KQ7 1210 aa8.59□□□□□ -1.03
CLDND1-208ENST00000503004 MYO15BQ96JP2 1530 aa8.58□□□□□ -1.04
CLDND1-208ENST00000503004 POTEDQ86YR6 584 aa8.58□□□□□ -1.04
CLDND1-208ENST00000503004 SCRIBQ14160 1630 aa8.5□□□□□ -1.05
CLDND1-208ENST00000503004 ABCC9O60706 1549 aa8.48□□□□□ -1.05
CLDND1-208ENST00000503004 HRCP23327 699 aa8.46□□□□□ -1.06
CLDND1-208ENST00000503004 RSF1Q96T23 1441 aaPredicted RBP8.42□□□□□ -1.06
CLDND1-208ENST00000503004 LOC105371045A0A1W2PR82 267 aa8.41□□□□□ -1.06
CLDND1-208ENST00000503004 PPARGC1BQ86YN6 1023 aaKnown RBP8.4□□□□□ -1.06
CLDND1-208ENST00000503004 PHF23Q9BUL5 403 aaPredicted RBP8.35□□□□□ -1.07
CLDND1-208ENST00000503004 PCGF6Q9BYE7 350 aa8.35□□□□□ -1.07
CLDND1-208ENST00000503004 NACADO15069 1562 aa8.34□□□□□ -1.07
CLDND1-208ENST00000503004 CECR2Q9BXF3 1484 aa8.34□□□□□ -1.07
CLDND1-208ENST00000503004 RB1CC1Q8TDY2 1594 aa8.32□□□□□ -1.08
CLDND1-208ENST00000503004 SCAF1Q9H7N4 1312 aaKnown RBP8.31□□□□□ -1.08
CLDND1-208ENST00000503004 TRIM41Q8WV44 630 aa8.29□□□□□ -1.08
CLDND1-208ENST00000503004 MROH2BQ7Z745 1585 aa8.28□□□□□ -1.08
CLDND1-208ENST00000503004 FAM9AQ8IZU1 332 aaPredicted RBP8.27□□□□□ -1.09
CLDND1-208ENST00000503004 PLPPR3Q6T4P5 718 aa8.27□□□□□ -1.09
CLDND1-208ENST00000503004 TTBK1Q5TCY1 1321 aaPredicted RBP8.24□□□□□ -1.09
CLDND1-208ENST00000503004 WIZO95785 1651 aa8.23□□□□□ -1.09
CLDND1-208ENST00000503004 RTN4Q9NQC3 1192 aaKnown RBP8.23□□□□□ -1.09
CLDND1-208ENST00000503004 PRKCSHP14314 528 aaPredicted RBP8.21□□□□□ -1.1
CLDND1-208ENST00000503004 BAZ1AQ9NRL2 1556 aaPredicted RBP8.15□□□□□ -1.1
CLDND1-208ENST00000503004 TRIM26Q12899 539 aaPredicted RBP8.14□□□□□ -1.11
CLDND1-208ENST00000503004 PABPN1Q86U42 306 aaKnown RBP eCLIP8.14□□□□□ -1.11
CLDND1-208ENST00000503004 AMER1Q5JTC6 1135 aaPredicted RBP8.14□□□□□ -1.11
CLDND1-208ENST00000503004 UNC13AQ9UPW8 1703 aa8.11□□□□□ -1.11
CLDND1-208ENST00000503004 CSRNP3Q8WYN3 585 aa8.11□□□□□ -1.11
CLDND1-208ENST00000503004 BCL11AQ9H165 835 aa8.1□□□□□ -1.11
CLDND1-208ENST00000503004 SMARCA4P51532 1647 aa8.09□□□□□ -1.11
CLDND1-208ENST00000503004 NCBP3Q53F19 620 aaKnown RBP8.08□□□□□ -1.12
CLDND1-208ENST00000503004 CCDC88BA6NC98 1476 aa8.07□□□□□ -1.12
CLDND1-208ENST00000503004 TOP2AP11388 1531 aaKnown RBP8.06□□□□□ -1.12
CLDND1-208ENST00000503004 EIF4G1Q04637 1599 aaKnown RBP8.06□□□□□ -1.12
CLDND1-208ENST00000503004 ABCC8Q09428 1581 aa8.06□□□□□ -1.12
CLDND1-208ENST00000503004 KCNA4P22459 653 aa8.05□□□□□ -1.12
CLDND1-208ENST00000503004 DAXXQ9UER7 740 aaPredicted RBP8.05□□□□□ -1.12
CLDND1-208ENST00000503004 SMARCA2P51531 1590 aa8.03□□□□□ -1.12
CLDND1-208ENST00000503004 BICRAQ9NZM4 1560 aa8.03□□□□□ -1.12
CLDND1-208ENST00000503004 SOGA1O94964 1423 aa7.98□□□□□ -1.13
CLDND1-208ENST00000503004 RUSC2Q8N2Y8 1516 aa7.95□□□□□ -1.14
CLDND1-208ENST00000503004 APLP2Q06481 763 aa7.93□□□□□ -1.14
CLDND1-208ENST00000503004 ACIN1Q9UKV3 1341 aaKnown RBP7.92□□□□□ -1.14
CLDND1-208ENST00000503004 UBTFP17480 764 aaKnown RBP7.92□□□□□ -1.14
CLDND1-208ENST00000503004 ATAD2BQ9ULI0 1458 aa7.92□□□□□ -1.14
CLDND1-208ENST00000503004 PEG3Q9GZU2 1588 aa7.91□□□□□ -1.14
CLDND1-208ENST00000503004 WRNQ14191 1432 aaPredicted RBP eCLIP7.91□□□□□ -1.14
CLDND1-208ENST00000503004 CEP162Q5TB80 1403 aa7.9□□□□□ -1.14
CLDND1-208ENST00000503004 ZEB1P37275 1124 aaPredicted RBP7.89□□□□□ -1.15
CLDND1-208ENST00000503004 NEUROD1Q13562 356 aa7.89□□□□□ -1.15
CLDND1-208ENST00000503004 BAZ1BQ9UIG0 1483 aaKnown RBP7.89□□□□□ -1.15
CLDND1-208ENST00000503004 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.88□□□□□ -1.15
CLDND1-208ENST00000503004 ERICH6Q7L0X2 663 aa7.88□□□□□ -1.15
CLDND1-208ENST00000503004 GTF3C3Q9Y5Q9 886 aa7.88□□□□□ -1.15
CLDND1-208ENST00000503004 TNIKQ9UKE5 1360 aa7.87□□□□□ -1.15
CLDND1-208ENST00000503004 SYNJ1O43426 1573 aa7.86□□□□□ -1.15
CLDND1-208ENST00000503004 EEA1Q15075 1411 aa7.85□□□□□ -1.15
CLDND1-208ENST00000503004 CENPBP07199 599 aaPredicted RBP7.85□□□□□ -1.15
CLDND1-208ENST00000503004 RANGAP1P46060 587 aaPredicted RBP7.83□□□□□ -1.16
CLDND1-208ENST00000503004 CCER1Q8TC90 406 aaPredicted RBP7.83□□□□□ -1.16
CLDND1-208ENST00000503004 GOLGA3Q08378 1498 aa7.83□□□□□ -1.16
CLDND1-208ENST00000503004 CEP164Q9UPV0 1460 aa7.79□□□□□ -1.16
CLDND1-208ENST00000503004 RAPGEF2Q9Y4G8 1499 aa7.78□□□□□ -1.16
CLDND1-208ENST00000503004 CLIP1P30622 1438 aa7.76□□□□□ -1.17
CLDND1-208ENST00000503004 NCAPD3P42695 1498 aa7.75□□□□□ -1.17
CLDND1-208ENST00000503004 SLC4A1APQ9BWU0 796 aaKnown RBP7.74□□□□□ -1.17
CLDND1-208ENST00000503004 KIF21BO75037 1637 aa7.74□□□□□ -1.17
CLDND1-208ENST00000503004 TOP2BQ02880 1626 aa7.74□□□□□ -1.17
CLDND1-208ENST00000503004 ANP32EQ9BTT0 268 aa7.74□□□□□ -1.17
CLDND1-208ENST00000503004 HNRNPUL2Q1KMD3 747 aaKnown RBP7.73□□□□□ -1.17
CLDND1-208ENST00000503004 HMGXB3Q12766 1538 aa7.72□□□□□ -1.17
CLDND1-208ENST00000503004 VPS8Q8N3P4 1428 aa7.71□□□□□ -1.18
CLDND1-208ENST00000503004 ARXQ96QS3 562 aa7.7□□□□□ -1.18
CLDND1-208ENST00000503004 CUX1P39880 1505 aa7.7□□□□□ -1.18
CLDND1-208ENST00000503004 BIVM-ERCC5R4GMW8 1640 aa7.69□□□□□ -1.18
CLDND1-208ENST00000503004 CFTRP13569 1480 aa7.69□□□□□ -1.18
CLDND1-208ENST00000503004 PRXQ9BXM0 1461 aa7.67□□□□□ -1.18
CLDND1-208ENST00000503004 YTHDC1Q96MU7 727 aaKnown RBP7.66□□□□□ -1.18
CLDND1-208ENST00000503004 KIF27Q86VH2 1401 aa7.66□□□□□ -1.18
CLDND1-208ENST00000503004 KANK4Q5T7N3 995 aaPredicted RBP7.64□□□□□ -1.19
CLDND1-208ENST00000503004 DIEXFQ68CQ4 756 aaKnown RBP7.64□□□□□ -1.19
CLDND1-208ENST00000503004 ERICH3Q5RHP9 1530 aa7.63□□□□□ -1.19
CLDND1-208ENST00000503004 ARAP1Q96P48 1450 aa7.63□□□□□ -1.19
CLDND1-208ENST00000503004 CADPSQ9ULU8 1353 aa7.62□□□□□ -1.19
CLDND1-208ENST00000503004 CUX2O14529 1486 aa7.61□□□□□ -1.19
CLDND1-208ENST00000503004 TAOK2Q9UL54 1235 aa7.61□□□□□ -1.19
CLDND1-208ENST00000503004 TIMELESSQ9UNS1 1208 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms