RNA–Protein interactions for RNA: ENST00000502563.5

UBE2D3-212, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 3

Gene UBE2D3, Length 680 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-212ENST00000502563 NISCHQ9Y2I1 1504 aa26.06■■□□□ 1.76
UBE2D3-212ENST00000502563 AEBP2Q6ZN18 517 aaPredicted RBP24.12■■□□□ 1.45
UBE2D3-212ENST00000502563 CCDC180Q9P1Z9 1646 aa23.19■■□□□ 1.3
UBE2D3-212ENST00000502563 CHIC1Q5VXU3 224 aa22.49■■□□□ 1.19
UBE2D3-212ENST00000502563 ABCC9O60706 1549 aa22.36■■□□□ 1.17
UBE2D3-212ENST00000502563 MYO15BQ96JP2 1530 aa21.81■■□□□ 1.08
UBE2D3-212ENST00000502563 NACADO15069 1562 aa21.78■■□□□ 1.08
UBE2D3-212ENST00000502563 ZCCHC6Q5VYS8 1495 aaKnown RBP21.76■■□□□ 1.07
UBE2D3-212ENST00000502563 RB1CC1Q8TDY2 1594 aa21.73■■□□□ 1.07
UBE2D3-212ENST00000502563 DCAF1Q9Y4B6 1507 aa21.71■■□□□ 1.07
UBE2D3-212ENST00000502563 DCAF8L2P0C7V8 631 aa21.43■■□□□ 1.02
UBE2D3-212ENST00000502563 UNC13AQ9UPW8 1703 aa21.15■□□□□ 0.98
UBE2D3-212ENST00000502563 SHROOM4Q9ULL8 1493 aa21.04■□□□□ 0.96
UBE2D3-212ENST00000502563 BICRAQ9NZM4 1560 aa21.04■□□□□ 0.96
UBE2D3-212ENST00000502563 SCRIBQ14160 1630 aa20.96■□□□□ 0.95
UBE2D3-212ENST00000502563 PABPN1Q86U42 306 aaKnown RBP eCLIP20.85■□□□□ 0.93
UBE2D3-212ENST00000502563 SENP3Q9H4L4 574 aaPredicted RBP20.59■□□□□ 0.89
UBE2D3-212ENST00000502563 EIF4G1Q04637 1599 aaKnown RBP20.47■□□□□ 0.87
UBE2D3-212ENST00000502563 DNAJC5BQ9UF47 199 aa20.41■□□□□ 0.86
UBE2D3-212ENST00000502563 CC2D2AQ9P2K1 1620 aa20.32■□□□□ 0.84
UBE2D3-212ENST00000502563 PHF23Q9BUL5 403 aaPredicted RBP20.28■□□□□ 0.84
UBE2D3-212ENST00000502563 BAZ1AQ9NRL2 1556 aaPredicted RBP20.21■□□□□ 0.83
UBE2D3-212ENST00000502563 CECR2Q9BXF3 1484 aa20.18■□□□□ 0.82
UBE2D3-212ENST00000502563 SMARCA4P51532 1647 aa20.18■□□□□ 0.82
UBE2D3-212ENST00000502563 PEG3Q9GZU2 1588 aa20.1■□□□□ 0.81
UBE2D3-212ENST00000502563 NCAPD3P42695 1498 aa20.1■□□□□ 0.81
UBE2D3-212ENST00000502563 SMARCA2P51531 1590 aa20.08■□□□□ 0.81
UBE2D3-212ENST00000502563 ATAD2BQ9ULI0 1458 aa20.05■□□□□ 0.8
UBE2D3-212ENST00000502563 HMGXB3Q12766 1538 aa20.02■□□□□ 0.8
UBE2D3-212ENST00000502563 MROH2BQ7Z745 1585 aa20.01■□□□□ 0.79
UBE2D3-212ENST00000502563 BAZ1BQ9UIG0 1483 aaKnown RBP19.86■□□□□ 0.77
UBE2D3-212ENST00000502563 RSF1Q96T23 1441 aaPredicted RBP19.86■□□□□ 0.77
UBE2D3-212ENST00000502563 WIZO95785 1651 aa19.76■□□□□ 0.75
UBE2D3-212ENST00000502563 TOP2AP11388 1531 aaKnown RBP19.66■□□□□ 0.74
UBE2D3-212ENST00000502563 LAMC3Q9Y6N6 1575 aa19.53■□□□□ 0.72
UBE2D3-212ENST00000502563 CADPSQ9ULU8 1353 aa19.46■□□□□ 0.71
UBE2D3-212ENST00000502563 CFTRP13569 1480 aa19.4■□□□□ 0.7
UBE2D3-212ENST00000502563 NESP48681 1621 aa19.39■□□□□ 0.69
UBE2D3-212ENST00000502563 CCDC88BA6NC98 1476 aa19.37■□□□□ 0.69
UBE2D3-212ENST00000502563 PDS5BQ9NTI5 1447 aa19.37■□□□□ 0.69
UBE2D3-212ENST00000502563 ERCC6Q03468 1493 aa19.31■□□□□ 0.68
UBE2D3-212ENST00000502563 FOXD1Q16676 465 aa19.28■□□□□ 0.68
UBE2D3-212ENST00000502563 PRDM2Q13029 1718 aa19.24■□□□□ 0.67
UBE2D3-212ENST00000502563 CUX2O14529 1486 aa19.22■□□□□ 0.67
UBE2D3-212ENST00000502563 SUPT5HO00267 1087 aaKnown RBP19.2■□□□□ 0.66
UBE2D3-212ENST00000502563 KIF21AQ7Z4S6 1674 aa19.2■□□□□ 0.66
UBE2D3-212ENST00000502563 THOC2Q8NI27 1593 aaKnown RBP19.19■□□□□ 0.66
UBE2D3-212ENST00000502563 FANCD2Q9BXW9 1451 aa19.19■□□□□ 0.66
UBE2D3-212ENST00000502563 CEP164Q9UPV0 1460 aa19.17■□□□□ 0.66
UBE2D3-212ENST00000502563 MRC2Q9UBG0 1479 aa19.14■□□□□ 0.65
UBE2D3-212ENST00000502563 WDR62O43379 1518 aa19.11■□□□□ 0.65
UBE2D3-212ENST00000502563 ABCC8Q09428 1581 aa19.02■□□□□ 0.63
UBE2D3-212ENST00000502563 URB2Q14146 1524 aaKnown RBP18.98■□□□□ 0.63
UBE2D3-212ENST00000502563 DNMBPQ6XZF7 1577 aa18.93■□□□□ 0.62
UBE2D3-212ENST00000502563 TOPBP1Q92547 1522 aa18.9■□□□□ 0.62
UBE2D3-212ENST00000502563 IFT140Q96RY7 1462 aa18.8■□□□□ 0.6
UBE2D3-212ENST00000502563 CUX1P39880 1505 aa18.78■□□□□ 0.6
UBE2D3-212ENST00000502563 POLA1P09884 1462 aaPredicted RBP18.76■□□□□ 0.59
UBE2D3-212ENST00000502563 WDR97A6NE52 1622 aa18.72■□□□□ 0.59
UBE2D3-212ENST00000502563 WRNQ14191 1432 aaPredicted RBP eCLIP18.72■□□□□ 0.59
UBE2D3-212ENST00000502563 TARBP1Q13395 1621 aaKnown RBP18.71■□□□□ 0.59
UBE2D3-212ENST00000502563 TOP2BQ02880 1626 aa18.71■□□□□ 0.58
UBE2D3-212ENST00000502563 BIVM-ERCC5R4GMW8 1640 aa18.71■□□□□ 0.58
UBE2D3-212ENST00000502563 FGD5Q6ZNL6 1462 aa18.69■□□□□ 0.58
UBE2D3-212ENST00000502563 SOGA1O94964 1423 aa18.65■□□□□ 0.58
UBE2D3-212ENST00000502563 SYNJ1O43426 1573 aa18.62■□□□□ 0.57
UBE2D3-212ENST00000502563 ABCA10Q8WWZ4 1543 aa18.6■□□□□ 0.57
UBE2D3-212ENST00000502563 ZNF608Q9ULD9 1512 aaPredicted RBP18.6■□□□□ 0.57
UBE2D3-212ENST00000502563 RAD54L2Q9Y4B4 1467 aa18.58■□□□□ 0.57
UBE2D3-212ENST00000502563 EIF4G3O43432 1585 aaKnown RBP18.58■□□□□ 0.56
UBE2D3-212ENST00000502563 AQRO60306 1485 aaKnown RBP eCLIP18.5■□□□□ 0.554e-14■■■■□ 25.1
UBE2D3-212ENST00000502563 ABCA5Q8WWZ7 1642 aa18.49■□□□□ 0.55
UBE2D3-212ENST00000502563 GRIN2BQ13224 1484 aa18.47■□□□□ 0.55
UBE2D3-212ENST00000502563 TDRD9Q8NDG6 1382 aaKnown RBP18.47■□□□□ 0.55
UBE2D3-212ENST00000502563 GAPVD1Q14C86 1478 aa18.46■□□□□ 0.55
UBE2D3-212ENST00000502563 MAGI1Q96QZ7 1491 aaPredicted RBP18.46■□□□□ 0.54
UBE2D3-212ENST00000502563 POTEDQ86YR6 584 aa18.44■□□□□ 0.54
UBE2D3-212ENST00000502563 DNAJC5Q9H3Z4 198 aa18.41■□□□□ 0.54
UBE2D3-212ENST00000502563 ERICH3Q5RHP9 1530 aa18.4■□□□□ 0.54
UBE2D3-212ENST00000502563 PBRM1Q86U86 1689 aa18.39■□□□□ 0.53
UBE2D3-212ENST00000502563 SNAPC4Q5SXM2 1469 aa18.37■□□□□ 0.53
UBE2D3-212ENST00000502563 SYNJ2O15056 1496 aa18.35■□□□□ 0.53
UBE2D3-212ENST00000502563 KIF27Q86VH2 1401 aa18.34■□□□□ 0.53
UBE2D3-212ENST00000502563 OSCARQ8IYS5 282 aa18.34■□□□□ 0.53
UBE2D3-212ENST00000502563 ADAMTS12P58397 1594 aa18.3■□□□□ 0.52
UBE2D3-212ENST00000502563 FHAD1B1AJZ9 1412 aa18.29■□□□□ 0.52
UBE2D3-212ENST00000502563 CHD1O14646 1710 aa18.28■□□□□ 0.52
UBE2D3-212ENST00000502563 TRIM41Q8WV44 630 aa18.24■□□□□ 0.51
UBE2D3-212ENST00000502563 CUL7Q14999 1698 aa18.23■□□□□ 0.51
UBE2D3-212ENST00000502563 IGF1RP08069 1367 aa18.23■□□□□ 0.51
UBE2D3-212ENST00000502563 CHMP7Q8WUX9 453 aaPredicted RBP18.23■□□□□ 0.51
UBE2D3-212ENST00000502563 GRIN2AQ12879 1464 aa18.22■□□□□ 0.51
UBE2D3-212ENST00000502563 NUP160Q12769 1436 aa18.19■□□□□ 0.5
UBE2D3-212ENST00000502563 CLASP1Q7Z460 1538 aa18.18■□□□□ 0.5
UBE2D3-212ENST00000502563 FBLN2P98095 1184 aa18.15■□□□□ 0.5
UBE2D3-212ENST00000502563 MSH5O43196 834 aa18.14■□□□□ 0.49
UBE2D3-212ENST00000502563 EEA1Q15075 1411 aa18.14■□□□□ 0.49
UBE2D3-212ENST00000502563 CARMIL1Q5VZK9 1371 aa18.11■□□□□ 0.49
UBE2D3-212ENST00000502563 CEP170Q5SW79 1584 aa18.09■□□□□ 0.49
UBE2D3-212ENST00000502563 RUSC2Q8N2Y8 1516 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms