RNA–Protein interactions for RNA: ENST00000497758.1

MRPL55-234, Transcript of mitochondrial ribosomal protein L55, humanhuman

TSL 3

Gene MRPL55, Length 470 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL55-234ENST00000497758 NISCHQ9Y2I1 1504 aa28.35■■■□□ 2.13
MRPL55-234ENST00000497758 CCDC180Q9P1Z9 1646 aa25.18■■□□□ 1.62
MRPL55-234ENST00000497758 ABCC9O60706 1549 aa24.67■■□□□ 1.54
MRPL55-234ENST00000497758 DCAF8L2P0C7V8 631 aa23.78■■□□□ 1.4
MRPL55-234ENST00000497758 RB1CC1Q8TDY2 1594 aa23.74■■□□□ 1.39
MRPL55-234ENST00000497758 NACADO15069 1562 aa23.7■■□□□ 1.38
MRPL55-234ENST00000497758 ZCCHC6Q5VYS8 1495 aaKnown RBP23.62■■□□□ 1.37
MRPL55-234ENST00000497758 MYO15BQ96JP2 1530 aa23.54■■□□□ 1.36
MRPL55-234ENST00000497758 DCAF1Q9Y4B6 1507 aa23.44■■□□□ 1.34
MRPL55-234ENST00000497758 UNC13AQ9UPW8 1703 aa23.11■■□□□ 1.29
MRPL55-234ENST00000497758 PABPN1Q86U42 306 aaKnown RBP eCLIP23.08■■□□□ 1.29
MRPL55-234ENST00000497758 SCRIBQ14160 1630 aa23.02■■□□□ 1.28
MRPL55-234ENST00000497758 BICRAQ9NZM4 1560 aa22.96■■□□□ 1.27
MRPL55-234ENST00000497758 SHROOM4Q9ULL8 1493 aa22.78■■□□□ 1.24
MRPL55-234ENST00000497758 DNAJC5BQ9UF47 199 aa22.59■■□□□ 1.21
MRPL55-234ENST00000497758 EIF4G1Q04637 1599 aaKnown RBP22.39■■□□□ 1.18
MRPL55-234ENST00000497758 CC2D2AQ9P2K1 1620 aa22.29■■□□□ 1.16
MRPL55-234ENST00000497758 CECR2Q9BXF3 1484 aa22.18■■□□□ 1.14
MRPL55-234ENST00000497758 SMARCA4P51532 1647 aa21.99■■□□□ 1.11
MRPL55-234ENST00000497758 BAZ1AQ9NRL2 1556 aaPredicted RBP21.99■■□□□ 1.11
MRPL55-234ENST00000497758 ATAD2BQ9ULI0 1458 aa21.88■■□□□ 1.09
MRPL55-234ENST00000497758 SMARCA2P51531 1590 aa21.87■■□□□ 1.09
MRPL55-234ENST00000497758 NCAPD3P42695 1498 aa21.86■■□□□ 1.09
MRPL55-234ENST00000497758 MROH2BQ7Z745 1585 aa21.84■■□□□ 1.09
MRPL55-234ENST00000497758 HMGXB3Q12766 1538 aa21.76■■□□□ 1.07
MRPL55-234ENST00000497758 PEG3Q9GZU2 1588 aa21.75■■□□□ 1.07
MRPL55-234ENST00000497758 BAZ1BQ9UIG0 1483 aaKnown RBP21.74■■□□□ 1.07
MRPL55-234ENST00000497758 RSF1Q96T23 1441 aaPredicted RBP21.61■■□□□ 1.05
MRPL55-234ENST00000497758 WIZO95785 1651 aa21.6■■□□□ 1.05
MRPL55-234ENST00000497758 TOP2AP11388 1531 aaKnown RBP21.39■■□□□ 1.02
MRPL55-234ENST00000497758 NESP48681 1621 aa21.33■■□□□ 1.01
MRPL55-234ENST00000497758 ERCC6Q03468 1493 aa21.32■■□□□ 1
MRPL55-234ENST00000497758 LAMC3Q9Y6N6 1575 aa21.29■■□□□ 1
MRPL55-234ENST00000497758 CADPSQ9ULU8 1353 aa21.24■□□□□ 0.99
MRPL55-234ENST00000497758 PDS5BQ9NTI5 1447 aa21.19■□□□□ 0.98
MRPL55-234ENST00000497758 CCDC88BA6NC98 1476 aa21.14■□□□□ 0.98
MRPL55-234ENST00000497758 SUPT5HO00267 1087 aaKnown RBP21.14■□□□□ 0.97
MRPL55-234ENST00000497758 CFTRP13569 1480 aa21.11■□□□□ 0.97
MRPL55-234ENST00000497758 KIF21AQ7Z4S6 1674 aa21.05■□□□□ 0.96
MRPL55-234ENST00000497758 CUX2O14529 1486 aa21.04■□□□□ 0.96
MRPL55-234ENST00000497758 FANCD2Q9BXW9 1451 aa21.01■□□□□ 0.95
MRPL55-234ENST00000497758 CEP164Q9UPV0 1460 aa21■□□□□ 0.95
MRPL55-234ENST00000497758 THOC2Q8NI27 1593 aaKnown RBP20.99■□□□□ 0.95
MRPL55-234ENST00000497758 MRC2Q9UBG0 1479 aa20.95■□□□□ 0.94
MRPL55-234ENST00000497758 PRDM2Q13029 1718 aa20.9■□□□□ 0.94
MRPL55-234ENST00000497758 DNAJC5Q9H3Z4 198 aa20.88■□□□□ 0.93
MRPL55-234ENST00000497758 WDR62O43379 1518 aa20.85■□□□□ 0.93
MRPL55-234ENST00000497758 URB2Q14146 1524 aaKnown RBP20.78■□□□□ 0.92
MRPL55-234ENST00000497758 ABCC8Q09428 1581 aa20.68■□□□□ 0.9
MRPL55-234ENST00000497758 TOPBP1Q92547 1522 aa20.66■□□□□ 0.9
MRPL55-234ENST00000497758 DNMBPQ6XZF7 1577 aa20.63■□□□□ 0.89
MRPL55-234ENST00000497758 IFT140Q96RY7 1462 aa20.55■□□□□ 0.88
MRPL55-234ENST00000497758 CUX1P39880 1505 aa20.5■□□□□ 0.87
MRPL55-234ENST00000497758 POLA1P09884 1462 aaPredicted RBP20.49■□□□□ 0.87
MRPL55-234ENST00000497758 FGD5Q6ZNL6 1462 aa20.44■□□□□ 0.86
MRPL55-234ENST00000497758 SOGA1O94964 1423 aa20.43■□□□□ 0.86
MRPL55-234ENST00000497758 ZNF608Q9ULD9 1512 aaPredicted RBP20.43■□□□□ 0.86
MRPL55-234ENST00000497758 TARBP1Q13395 1621 aaKnown RBP20.4■□□□□ 0.86
MRPL55-234ENST00000497758 WRNQ14191 1432 aaPredicted RBP eCLIP20.4■□□□□ 0.86
MRPL55-234ENST00000497758 RAD54L2Q9Y4B4 1467 aa20.4■□□□□ 0.86
MRPL55-234ENST00000497758 EIF4G3O43432 1585 aaKnown RBP20.34■□□□□ 0.85
MRPL55-234ENST00000497758 AQRO60306 1485 aaKnown RBP eCLIP20.33■□□□□ 0.853e-7■■■■■ 28.3
MRPL55-234ENST00000497758 TOP2BQ02880 1626 aa20.32■□□□□ 0.84
MRPL55-234ENST00000497758 SYNJ1O43426 1573 aa20.31■□□□□ 0.84
MRPL55-234ENST00000497758 TDRD9Q8NDG6 1382 aaKnown RBP20.31■□□□□ 0.84
MRPL55-234ENST00000497758 BIVM-ERCC5R4GMW8 1640 aa20.31■□□□□ 0.84
MRPL55-234ENST00000497758 WDR97A6NE52 1622 aa20.27■□□□□ 0.83
MRPL55-234ENST00000497758 ABCA10Q8WWZ4 1543 aa20.24■□□□□ 0.83
MRPL55-234ENST00000497758 OSCARQ8IYS5 282 aa20.2■□□□□ 0.82
MRPL55-234ENST00000497758 GRIN2BQ13224 1484 aa20.18■□□□□ 0.82
MRPL55-234ENST00000497758 GAPVD1Q14C86 1478 aa20.18■□□□□ 0.82
MRPL55-234ENST00000497758 FBLN2P98095 1184 aa20.15■□□□□ 0.82
MRPL55-234ENST00000497758 SNAPC4Q5SXM2 1469 aa20.15■□□□□ 0.82
MRPL55-234ENST00000497758 ABCA5Q8WWZ7 1642 aa20.14■□□□□ 0.81
MRPL55-234ENST00000497758 MAGI1Q96QZ7 1491 aaPredicted RBP20.13■□□□□ 0.81
MRPL55-234ENST00000497758 PBRM1Q86U86 1689 aa20.1■□□□□ 0.81
MRPL55-234ENST00000497758 CHMP7Q8WUX9 453 aaPredicted RBP20.08■□□□□ 0.81
MRPL55-234ENST00000497758 CHD1O14646 1710 aa20.07■□□□□ 0.8
MRPL55-234ENST00000497758 SYNJ2O15056 1496 aa20.05■□□□□ 0.8
MRPL55-234ENST00000497758 ERICH3Q5RHP9 1530 aa20■□□□□ 0.79
MRPL55-234ENST00000497758 KIF27Q86VH2 1401 aa20■□□□□ 0.79
MRPL55-234ENST00000497758 TRIM41Q8WV44 630 aa19.97■□□□□ 0.79
MRPL55-234ENST00000497758 ADAMTS12P58397 1594 aa19.96■□□□□ 0.79
MRPL55-234ENST00000497758 FHAD1B1AJZ9 1412 aa19.96■□□□□ 0.79
MRPL55-234ENST00000497758 GRIN2AQ12879 1464 aa19.92■□□□□ 0.78
MRPL55-234ENST00000497758 IGF1RP08069 1367 aa19.87■□□□□ 0.77
MRPL55-234ENST00000497758 CLASP1Q7Z460 1538 aa19.86■□□□□ 0.77
MRPL55-234ENST00000497758 ARHGEF11O15085 1522 aa19.83■□□□□ 0.77
MRPL55-234ENST00000497758 CUL7Q14999 1698 aa19.82■□□□□ 0.76
MRPL55-234ENST00000497758 RIMBP3CA6NJZ7 1639 aa19.82■□□□□ 0.76
MRPL55-234ENST00000497758 RIMBP3BA6NNM3 1639 aa19.82■□□□□ 0.76
MRPL55-234ENST00000497758 RIMBP3Q9UFD9 1639 aa19.82■□□□□ 0.76
MRPL55-234ENST00000497758 NUP160Q12769 1436 aa19.81■□□□□ 0.76
MRPL55-234ENST00000497758 CEP170Q5SW79 1584 aa19.79■□□□□ 0.76
MRPL55-234ENST00000497758 CARMIL1Q5VZK9 1371 aa19.78■□□□□ 0.76
MRPL55-234ENST00000497758 RUSC2Q8N2Y8 1516 aa19.75■□□□□ 0.75
MRPL55-234ENST00000497758 CYB5RLQ6IPT4 315 aa19.69■□□□□ 0.74
MRPL55-234ENST00000497758 CHIC1Q5VXU3 224 aa19.68■□□□□ 0.74
MRPL55-234ENST00000497758 ARAP1Q96P48 1450 aa19.67■□□□□ 0.74
MRPL55-234ENST00000497758 RAPGEF2Q9Y4G8 1499 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms