RNA–Protein interactions for RNA: ENST00000497544.2

CTSD-206, Transcript of cathepsin D, humanhuman

TSL 2

Gene CTSD, Length 783 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSD-206ENST00000497544 NISCHQ9Y2I1 1504 aa47.34■■■■■ 5.17
CTSD-206ENST00000497544 ABCC9O60706 1549 aa43.37■■■■■ 4.53
CTSD-206ENST00000497544 CCDC180Q9P1Z9 1646 aa42.04■■■■■ 4.32
CTSD-206ENST00000497544 DNAJC5BQ9UF47 199 aa41.95■■■■■ 4.31
CTSD-206ENST00000497544 RB1CC1Q8TDY2 1594 aa40.65■■■■■ 4.1
CTSD-206ENST00000497544 PABPN1Q86U42 306 aaKnown RBP eCLIP40.1■■■■■ 4.01
CTSD-206ENST00000497544 NACADO15069 1562 aa40.01■■■■□ 3.99
CTSD-206ENST00000497544 UNC13AQ9UPW8 1703 aa39.9■■■■□ 3.98
CTSD-206ENST00000497544 BICRAQ9NZM4 1560 aa39.6■■■■□ 3.93
CTSD-206ENST00000497544 DCAF8L2P0C7V8 631 aa39.56■■■■□ 3.92
CTSD-206ENST00000497544 ZCCHC6Q5VYS8 1495 aaKnown RBP39.5■■■■□ 3.91
CTSD-206ENST00000497544 DNAJC5Q9H3Z4 198 aa39.49■■■■□ 3.91
CTSD-206ENST00000497544 CECR2Q9BXF3 1484 aa39.19■■■■□ 3.86
CTSD-206ENST00000497544 DCAF1Q9Y4B6 1507 aa39.15■■■■□ 3.86
CTSD-206ENST00000497544 CC2D2AQ9P2K1 1620 aa39.14■■■■□ 3.86
CTSD-206ENST00000497544 MYO15BQ96JP2 1530 aa39.11■■■■□ 3.85
CTSD-206ENST00000497544 SHROOM4Q9ULL8 1493 aa38.8■■■■□ 3.8
CTSD-206ENST00000497544 EIF4G1Q04637 1599 aaKnown RBP38.7■■■■□ 3.79
CTSD-206ENST00000497544 SCRIBQ14160 1630 aa38.23■■■■□ 3.71
CTSD-206ENST00000497544 CUX2O14529 1486 aa37.93■■■■□ 3.66
CTSD-206ENST00000497544 ERCC6Q03468 1493 aa37.5■■■■□ 3.59
CTSD-206ENST00000497544 TRIM41Q8WV44 630 aa37.17■■■■□ 3.54
CTSD-206ENST00000497544 NCAPD3P42695 1498 aa36.93■■■■□ 3.5
CTSD-206ENST00000497544 NESP48681 1621 aa36.88■■■■□ 3.5
CTSD-206ENST00000497544 THOC2Q8NI27 1593 aaKnown RBP36.84■■■■□ 3.49
CTSD-206ENST00000497544 BAZ1AQ9NRL2 1556 aaPredicted RBP36.66■■■■□ 3.46
CTSD-206ENST00000497544 ATAD2BQ9ULI0 1458 aa36.64■■■■□ 3.46
CTSD-206ENST00000497544 SMARCA4P51532 1647 aa36.59■■■■□ 3.45
CTSD-206ENST00000497544 HMGXB3Q12766 1538 aa36.57■■■■□ 3.44
CTSD-206ENST00000497544 SMARCA2P51531 1590 aa36.49■■■■□ 3.43
CTSD-206ENST00000497544 MROH2BQ7Z745 1585 aa36.49■■■■□ 3.43
CTSD-206ENST00000497544 KIF21AQ7Z4S6 1674 aa36.43■■■■□ 3.42
CTSD-206ENST00000497544 LAMC3Q9Y6N6 1575 aa36.36■■■■□ 3.41
CTSD-206ENST00000497544 RSF1Q96T23 1441 aaPredicted RBP36.29■■■■□ 3.4
CTSD-206ENST00000497544 BAZ1BQ9UIG0 1483 aaKnown RBP36.2■■■■□ 3.39
CTSD-206ENST00000497544 PEG3Q9GZU2 1588 aa36.19■■■■□ 3.38
CTSD-206ENST00000497544 WIZO95785 1651 aa36.14■■■■□ 3.38
CTSD-206ENST00000497544 PDS5BQ9NTI5 1447 aa36.12■■■■□ 3.37
CTSD-206ENST00000497544 MRC2Q9UBG0 1479 aa35.96■■■■□ 3.35
CTSD-206ENST00000497544 WDR62O43379 1518 aa35.96■■■■□ 3.35
CTSD-206ENST00000497544 SUPT5HO00267 1087 aaKnown RBP35.95■■■■□ 3.35
CTSD-206ENST00000497544 OSCARQ8IYS5 282 aa35.88■■■■□ 3.33
CTSD-206ENST00000497544 TOP2AP11388 1531 aaKnown RBP35.77■■■■□ 3.32
CTSD-206ENST00000497544 RIMBP3CA6NJZ7 1639 aa35.74■■■■□ 3.31
CTSD-206ENST00000497544 RIMBP3BA6NNM3 1639 aa35.74■■■■□ 3.31
CTSD-206ENST00000497544 RIMBP3Q9UFD9 1639 aa35.74■■■■□ 3.31
CTSD-206ENST00000497544 CADPSQ9ULU8 1353 aa35.71■■■■□ 3.31
CTSD-206ENST00000497544 CEP164Q9UPV0 1460 aa35.53■■■■□ 3.28
CTSD-206ENST00000497544 ARHGEF11O15085 1522 aa35.43■■■■□ 3.26
CTSD-206ENST00000497544 CCDC88BA6NC98 1476 aa35.39■■■■□ 3.26
CTSD-206ENST00000497544 FANCD2Q9BXW9 1451 aa35.35■■■■□ 3.25
CTSD-206ENST00000497544 TRHP20396 242 aaPredicted RBP35.21■■■■□ 3.23
CTSD-206ENST00000497544 AEBP2Q6ZN18 517 aaPredicted RBP35.21■■■■□ 3.23
CTSD-206ENST00000497544 URB2Q14146 1524 aaKnown RBP35.21■■■■□ 3.23
CTSD-206ENST00000497544 CYB5RLQ6IPT4 315 aa35.16■■■■□ 3.22
CTSD-206ENST00000497544 CFTRP13569 1480 aa35.06■■■■□ 3.2
CTSD-206ENST00000497544 ARAP1Q96P48 1450 aa35.01■■■■□ 3.19
CTSD-206ENST00000497544 ZNF608Q9ULD9 1512 aaPredicted RBP35■■■■□ 3.19
CTSD-206ENST00000497544 IFT140Q96RY7 1462 aa34.85■■■■□ 3.17
CTSD-206ENST00000497544 CHD1O14646 1710 aa34.83■■■■□ 3.17
CTSD-206ENST00000497544 PRDM2Q13029 1718 aa34.81■■■■□ 3.16
CTSD-206ENST00000497544 EIF4G3O43432 1585 aaKnown RBP34.77■■■■□ 3.16
CTSD-206ENST00000497544 TOPBP1Q92547 1522 aa34.55■■■■□ 3.12
CTSD-206ENST00000497544 AQRO60306 1485 aaKnown RBP eCLIP34.46■■■■□ 3.113e-6■■■■□ 24.9
CTSD-206ENST00000497544 FBLN2P98095 1184 aa34.44■■■■□ 3.1
CTSD-206ENST00000497544 TARBP1Q13395 1621 aaKnown RBP34.41■■■■□ 3.1
CTSD-206ENST00000497544 CLASP1Q7Z460 1538 aa34.34■■■■□ 3.09
CTSD-206ENST00000497544 ABCC8Q09428 1581 aa34.33■■■■□ 3.09
CTSD-206ENST00000497544 DNMBPQ6XZF7 1577 aa34.31■■■■□ 3.08
CTSD-206ENST00000497544 WRNQ14191 1432 aaPredicted RBP eCLIP34.23■■■■□ 3.07
CTSD-206ENST00000497544 CUX1P39880 1505 aa34.19■■■■□ 3.06
CTSD-206ENST00000497544 SYNJ1O43426 1573 aa34.13■■■■□ 3.05
CTSD-206ENST00000497544 POLA1P09884 1462 aaPredicted RBP34.11■■■■□ 3.05
CTSD-206ENST00000497544 SNAPC4Q5SXM2 1469 aa34.09■■■■□ 3.05
CTSD-206ENST00000497544 TOP2BQ02880 1626 aa34.04■■■■□ 3.04
CTSD-206ENST00000497544 GAPVD1Q14C86 1478 aa34.01■■■■□ 3.04
CTSD-206ENST00000497544 FGD5Q6ZNL6 1462 aa34.01■■■■□ 3.04
CTSD-206ENST00000497544 RAD54L2Q9Y4B4 1467 aa34.01■■■■□ 3.04
CTSD-206ENST00000497544 BIVM-ERCC5R4GMW8 1640 aa34.01■■■■□ 3.04
CTSD-206ENST00000497544 TDRD9Q8NDG6 1382 aaKnown RBP34■■■■□ 3.03
CTSD-206ENST00000497544 ILDR1Q86SU0 546 aaPredicted RBP33.99■■■■□ 3.03
CTSD-206ENST00000497544 SOGA1O94964 1423 aa33.96■■■■□ 3.03
CTSD-206ENST00000497544 CHMP7Q8WUX9 453 aaPredicted RBP33.94■■■■□ 3.02
CTSD-206ENST00000497544 MAGI1Q96QZ7 1491 aaPredicted RBP33.91■■■■□ 3.02
CTSD-206ENST00000497544 WDR97A6NE52 1622 aa33.9■■■■□ 3.02
CTSD-206ENST00000497544 CHIC1Q5VXU3 224 aa33.82■■■■□ 3
CTSD-206ENST00000497544 SYNJ2O15056 1496 aa33.82■■■■□ 3
CTSD-206ENST00000497544 KIF13AQ9H1H9 1805 aa33.79■■■■□ 3
CTSD-206ENST00000497544 GRIN2BQ13224 1484 aa33.76■■■□□ 2.99
CTSD-206ENST00000497544 ERCC6L2Q5T890 1561 aa33.73■■■□□ 2.99
CTSD-206ENST00000497544 ABCA10Q8WWZ4 1543 aa33.7■■■□□ 2.99
CTSD-206ENST00000497544 PBRM1Q86U86 1689 aa33.65■■■□□ 2.98
CTSD-206ENST00000497544 KDM4FA0A1W2PPD8 638 aa33.55■■■□□ 2.96
CTSD-206ENST00000497544 CEP170Q5SW79 1584 aa33.49■■■□□ 2.95
CTSD-206ENST00000497544 KIF27Q86VH2 1401 aa33.49■■■□□ 2.95
CTSD-206ENST00000497544 ABCA5Q8WWZ7 1642 aa33.47■■■□□ 2.95
CTSD-206ENST00000497544 SHROOM2Q13796 1616 aa33.37■■■□□ 2.93
CTSD-206ENST00000497544 GRIN2AQ12879 1464 aa33.35■■■□□ 2.93
CTSD-206ENST00000497544 RUSC2Q8N2Y8 1516 aa33.33■■■□□ 2.93
CTSD-206ENST00000497544 ERICH3Q5RHP9 1530 aa33.31■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms