RNA–Protein interactions for RNA: ENST00000497188.1

CLK2-207, Transcript of CDC like kinase 2, humanhuman

TSL 2

Gene CLK2, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK2-207ENST00000497188 NISCHQ9Y2I1 1504 aa26.72■■□□□ 1.87
CLK2-207ENST00000497188 CCDC180Q9P1Z9 1646 aa23.31■■□□□ 1.32
CLK2-207ENST00000497188 ABCC9O60706 1549 aa22.4■■□□□ 1.18
CLK2-207ENST00000497188 ZCCHC6Q5VYS8 1495 aaKnown RBP22.38■■□□□ 1.17
CLK2-207ENST00000497188 DCAF8L2P0C7V8 631 aa22.33■■□□□ 1.16
CLK2-207ENST00000497188 DCAF1Q9Y4B6 1507 aa22■■□□□ 1.11
CLK2-207ENST00000497188 SHROOM4Q9ULL8 1493 aa21.82■■□□□ 1.08
CLK2-207ENST00000497188 MYO15BQ96JP2 1530 aa21.79■■□□□ 1.08
CLK2-207ENST00000497188 NACADO15069 1562 aa21.78■■□□□ 1.08
CLK2-207ENST00000497188 RB1CC1Q8TDY2 1594 aa21.66■■□□□ 1.06
CLK2-207ENST00000497188 SCRIBQ14160 1630 aa21.54■■□□□ 1.04
CLK2-207ENST00000497188 UNC13AQ9UPW8 1703 aa21.31■■□□□ 1
CLK2-207ENST00000497188 PABPN1Q86U42 306 aaKnown RBP eCLIP21.15■□□□□ 0.982e-6■□□□□ 11.1
CLK2-207ENST00000497188 BICRAQ9NZM4 1560 aa21.08■□□□□ 0.96
CLK2-207ENST00000497188 SUPT5HO00267 1087 aaKnown RBP20.89■□□□□ 0.93
CLK2-207ENST00000497188 CECR2Q9BXF3 1484 aa20.87■□□□□ 0.93
CLK2-207ENST00000497188 MROH2BQ7Z745 1585 aa20.69■□□□□ 0.9
CLK2-207ENST00000497188 RSF1Q96T23 1441 aaPredicted RBP20.68■□□□□ 0.9
CLK2-207ENST00000497188 BAZ1AQ9NRL2 1556 aaPredicted RBP20.61■□□□□ 0.89
CLK2-207ENST00000497188 SMARCA4P51532 1647 aa20.58■□□□□ 0.89
CLK2-207ENST00000497188 WIZO95785 1651 aa20.52■□□□□ 0.88
CLK2-207ENST00000497188 EIF4G1Q04637 1599 aaKnown RBP20.44■□□□□ 0.86
CLK2-207ENST00000497188 ATAD2BQ9ULI0 1458 aa20.31■□□□□ 0.84
CLK2-207ENST00000497188 PEG3Q9GZU2 1588 aa20.28■□□□□ 0.84
CLK2-207ENST00000497188 SMARCA2P51531 1590 aa20.24■□□□□ 0.83
CLK2-207ENST00000497188 CC2D2AQ9P2K1 1620 aa20.22■□□□□ 0.83
CLK2-207ENST00000497188 TOP2AP11388 1531 aaKnown RBP20.21■□□□□ 0.83
CLK2-207ENST00000497188 BAZ1BQ9UIG0 1483 aaKnown RBP20.18■□□□□ 0.82
CLK2-207ENST00000497188 NCAPD3P42695 1498 aa20.14■□□□□ 0.81
CLK2-207ENST00000497188 CCDC88BA6NC98 1476 aa20.07■□□□□ 0.8
CLK2-207ENST00000497188 HMGXB3Q12766 1538 aa20.05■□□□□ 0.8
CLK2-207ENST00000497188 DNAJC5BQ9UF47 199 aa20.04■□□□□ 0.8
CLK2-207ENST00000497188 CHIC1Q5VXU3 224 aa19.83■□□□□ 0.77
CLK2-207ENST00000497188 CFTRP13569 1480 aa19.65■□□□□ 0.74
CLK2-207ENST00000497188 CADPSQ9ULU8 1353 aa19.64■□□□□ 0.73
CLK2-207ENST00000497188 ABCC8Q09428 1581 aa19.62■□□□□ 0.73
CLK2-207ENST00000497188 NESP48681 1621 aa19.62■□□□□ 0.73
CLK2-207ENST00000497188 TRIM41Q8WV44 630 aa19.59■□□□□ 0.73
CLK2-207ENST00000497188 PRDM2Q13029 1718 aa19.5■□□□□ 0.71
CLK2-207ENST00000497188 LAMC3Q9Y6N6 1575 aa19.46■□□□□ 0.71
CLK2-207ENST00000497188 WRNQ14191 1432 aaPredicted RBP eCLIP19.46■□□□□ 0.71
CLK2-207ENST00000497188 FANCD2Q9BXW9 1451 aa19.43■□□□□ 0.7
CLK2-207ENST00000497188 SYNJ1O43426 1573 aa19.41■□□□□ 0.7
CLK2-207ENST00000497188 PDS5BQ9NTI5 1447 aa19.35■□□□□ 0.69
CLK2-207ENST00000497188 CUX1P39880 1505 aa19.34■□□□□ 0.69
CLK2-207ENST00000497188 KIF21AQ7Z4S6 1674 aa19.33■□□□□ 0.68
CLK2-207ENST00000497188 FAM9AQ8IZU1 332 aaPredicted RBP19.32■□□□□ 0.68
CLK2-207ENST00000497188 CEP164Q9UPV0 1460 aa19.3■□□□□ 0.68
CLK2-207ENST00000497188 TOP2BQ02880 1626 aa19.3■□□□□ 0.68
CLK2-207ENST00000497188 BIVM-ERCC5R4GMW8 1640 aa19.26■□□□□ 0.67
CLK2-207ENST00000497188 SOGA1O94964 1423 aa19.22■□□□□ 0.67
CLK2-207ENST00000497188 URB2Q14146 1524 aaKnown RBP19.22■□□□□ 0.67
CLK2-207ENST00000497188 TOPBP1Q92547 1522 aa19.2■□□□□ 0.66
CLK2-207ENST00000497188 RUSC2Q8N2Y8 1516 aa19.19■□□□□ 0.66
CLK2-207ENST00000497188 ERCC6Q03468 1493 aa19.18■□□□□ 0.66
CLK2-207ENST00000497188 DNMBPQ6XZF7 1577 aa19.17■□□□□ 0.66
CLK2-207ENST00000497188 LOC105371045A0A1W2PR82 267 aa19.16■□□□□ 0.66
CLK2-207ENST00000497188 FGD5Q6ZNL6 1462 aa19.15■□□□□ 0.66
CLK2-207ENST00000497188 EHMT2Q96KQ7 1210 aa19.14■□□□□ 0.65
CLK2-207ENST00000497188 MRC2Q9UBG0 1479 aa19.11■□□□□ 0.65
CLK2-207ENST00000497188 POLA1P09884 1462 aaPredicted RBP19.09■□□□□ 0.65
CLK2-207ENST00000497188 RAD54L2Q9Y4B4 1467 aa19.09■□□□□ 0.65
CLK2-207ENST00000497188 CSRNP3Q8WYN3 585 aa19.03■□□□□ 0.64
CLK2-207ENST00000497188 THOC2Q8NI27 1593 aaKnown RBP19.01■□□□□ 0.63
CLK2-207ENST00000497188 CUX2O14529 1486 aa19.01■□□□□ 0.63
CLK2-207ENST00000497188 WDR62O43379 1518 aa19■□□□□ 0.63
CLK2-207ENST00000497188 EEA1Q15075 1411 aa18.98■□□□□ 0.63
CLK2-207ENST00000497188 KIF27Q86VH2 1401 aa18.96■□□□□ 0.63
CLK2-207ENST00000497188 ABCA10Q8WWZ4 1543 aa18.94■□□□□ 0.62
CLK2-207ENST00000497188 TDRD9Q8NDG6 1382 aaKnown RBP18.93■□□□□ 0.62
CLK2-207ENST00000497188 TARBP1Q13395 1621 aaKnown RBP18.91■□□□□ 0.62
CLK2-207ENST00000497188 WDR97A6NE52 1622 aa18.89■□□□□ 0.61
CLK2-207ENST00000497188 IGF1RP08069 1367 aa18.87■□□□□ 0.61
CLK2-207ENST00000497188 ZNF608Q9ULD9 1512 aaPredicted RBP18.84■□□□□ 0.61
CLK2-207ENST00000497188 AQRO60306 1485 aaKnown RBP eCLIP18.84■□□□□ 0.617e-7■■■■■ 40.5
CLK2-207ENST00000497188 IFT140Q96RY7 1462 aa18.84■□□□□ 0.61
CLK2-207ENST00000497188 GAPVD1Q14C86 1478 aa18.81■□□□□ 0.6
CLK2-207ENST00000497188 RAPGEF2Q9Y4G8 1499 aa18.81■□□□□ 0.6
CLK2-207ENST00000497188 UBTFP17480 764 aaKnown RBP18.81■□□□□ 0.6
CLK2-207ENST00000497188 ABCA5Q8WWZ7 1642 aa18.8■□□□□ 0.6
CLK2-207ENST00000497188 PRXQ9BXM0 1461 aa18.79■□□□□ 0.6
CLK2-207ENST00000497188 KIF21BO75037 1637 aa18.78■□□□□ 0.6
CLK2-207ENST00000497188 GOLGA3Q08378 1498 aa18.77■□□□□ 0.6
CLK2-207ENST00000497188 CARMIL1Q5VZK9 1371 aa18.76■□□□□ 0.59
CLK2-207ENST00000497188 EIF4G3O43432 1585 aaKnown RBP18.7■□□□□ 0.58
CLK2-207ENST00000497188 PBRM1Q86U86 1689 aa18.7■□□□□ 0.58
CLK2-207ENST00000497188 ERICH3Q5RHP9 1530 aa18.69■□□□□ 0.58
CLK2-207ENST00000497188 TNIKQ9UKE5 1360 aa18.68■□□□□ 0.58
CLK2-207ENST00000497188 RANGAP1P46060 587 aaPredicted RBP18.67■□□□□ 0.58
CLK2-207ENST00000497188 GRIN2BQ13224 1484 aa18.67■□□□□ 0.58
CLK2-207ENST00000497188 CUL7Q14999 1698 aa18.64■□□□□ 0.58
CLK2-207ENST00000497188 SNAPC4Q5SXM2 1469 aa18.6■□□□□ 0.57
CLK2-207ENST00000497188 CEP162Q5TB80 1403 aa18.6■□□□□ 0.57
CLK2-207ENST00000497188 FHAD1B1AJZ9 1412 aa18.58■□□□□ 0.56
CLK2-207ENST00000497188 ADAMTS12P58397 1594 aa18.57■□□□□ 0.56
CLK2-207ENST00000497188 FBLN2P98095 1184 aa18.55■□□□□ 0.56
CLK2-207ENST00000497188 CHMP7Q8WUX9 453 aaPredicted RBP18.51■□□□□ 0.55
CLK2-207ENST00000497188 MAGI1Q96QZ7 1491 aaPredicted RBP18.51■□□□□ 0.55
CLK2-207ENST00000497188 CLIP1P30622 1438 aa18.5■□□□□ 0.55
CLK2-207ENST00000497188 SYNJ2O15056 1496 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms