RNA–Protein interactions for RNA: ENST00000496822.1

NEK4-206, Transcript of NIMA related kinase 4, humanhuman

TSL 3

Gene NEK4, Length 582 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK4-206ENST00000496822 NISCHQ9Y2I1 1504 aa37.56■■■■□ 3.6
NEK4-206ENST00000496822 CCDC180Q9P1Z9 1646 aa33.57■■■□□ 2.96
NEK4-206ENST00000496822 ABCC9O60706 1549 aa33.33■■■□□ 2.93
NEK4-206ENST00000496822 RB1CC1Q8TDY2 1594 aa31.81■■■□□ 2.68
NEK4-206ENST00000496822 NACADO15069 1562 aa31.65■■■□□ 2.66
NEK4-206ENST00000496822 DCAF8L2P0C7V8 631 aa31.52■■■□□ 2.64
NEK4-206ENST00000496822 MYO15BQ96JP2 1530 aa31.31■■■□□ 2.6
NEK4-206ENST00000496822 ZCCHC6Q5VYS8 1495 aaKnown RBP31.22■■■□□ 2.59
NEK4-206ENST00000496822 UNC13AQ9UPW8 1703 aa31.12■■■□□ 2.57
NEK4-206ENST00000496822 PABPN1Q86U42 306 aaKnown RBP eCLIP31.07■■■□□ 2.56
NEK4-206ENST00000496822 DNAJC5BQ9UF47 199 aa31.03■■■□□ 2.56
NEK4-206ENST00000496822 DCAF1Q9Y4B6 1507 aa31.02■■■□□ 2.56
NEK4-206ENST00000496822 BICRAQ9NZM4 1560 aa30.93■■■□□ 2.54
NEK4-206ENST00000496822 SCRIBQ14160 1630 aa30.66■■■□□ 2.5
NEK4-206ENST00000496822 SHROOM4Q9ULL8 1493 aa30.48■■■□□ 2.47
NEK4-206ENST00000496822 EIF4G1Q04637 1599 aaKnown RBP30.13■■■□□ 2.41
NEK4-206ENST00000496822 CC2D2AQ9P2K1 1620 aa30.11■■■□□ 2.41
NEK4-206ENST00000496822 CECR2Q9BXF3 1484 aa29.98■■■□□ 2.39
NEK4-206ENST00000496822 SMARCA4P51532 1647 aa29.25■■■□□ 2.27
NEK4-206ENST00000496822 NCAPD3P42695 1498 aa29.23■■■□□ 2.27
NEK4-206ENST00000496822 ATAD2BQ9ULI0 1458 aa29.2■■■□□ 2.26
NEK4-206ENST00000496822 BAZ1AQ9NRL2 1556 aaPredicted RBP29.12■■■□□ 2.25
NEK4-206ENST00000496822 SMARCA2P51531 1590 aa29.11■■■□□ 2.25
NEK4-206ENST00000496822 HMGXB3Q12766 1538 aa29.05■■■□□ 2.24
NEK4-206ENST00000496822 MROH2BQ7Z745 1585 aa28.98■■■□□ 2.23
NEK4-206ENST00000496822 PEG3Q9GZU2 1588 aa28.95■■■□□ 2.22
NEK4-206ENST00000496822 BAZ1BQ9UIG0 1483 aaKnown RBP28.92■■■□□ 2.22
NEK4-206ENST00000496822 NESP48681 1621 aa28.74■■■□□ 2.19
NEK4-206ENST00000496822 ERCC6Q03468 1493 aa28.73■■■□□ 2.19
NEK4-206ENST00000496822 WIZO95785 1651 aa28.63■■■□□ 2.17
NEK4-206ENST00000496822 CUX2O14529 1486 aa28.58■■■□□ 2.17
NEK4-206ENST00000496822 LAMC3Q9Y6N6 1575 aa28.52■■■□□ 2.16
NEK4-206ENST00000496822 RSF1Q96T23 1441 aaPredicted RBP28.46■■■□□ 2.15
NEK4-206ENST00000496822 THOC2Q8NI27 1593 aaKnown RBP28.39■■■□□ 2.14
NEK4-206ENST00000496822 KIF21AQ7Z4S6 1674 aa28.35■■■□□ 2.13
NEK4-206ENST00000496822 CADPSQ9ULU8 1353 aa28.35■■■□□ 2.13
NEK4-206ENST00000496822 PDS5BQ9NTI5 1447 aa28.33■■■□□ 2.13
NEK4-206ENST00000496822 TOP2AP11388 1531 aaKnown RBP28.28■■■□□ 2.12
NEK4-206ENST00000496822 DNAJC5Q9H3Z4 198 aa28.22■■■□□ 2.11
NEK4-206ENST00000496822 MRC2Q9UBG0 1479 aa28.11■■■□□ 2.09
NEK4-206ENST00000496822 CFTRP13569 1480 aa28.1■■■□□ 2.09
NEK4-206ENST00000496822 FANCD2Q9BXW9 1451 aa28.05■■■□□ 2.08
NEK4-206ENST00000496822 CEP164Q9UPV0 1460 aa28.05■■■□□ 2.08
NEK4-206ENST00000496822 WDR62O43379 1518 aa28.04■■■□□ 2.08
NEK4-206ENST00000496822 CCDC88BA6NC98 1476 aa27.95■■■□□ 2.07
NEK4-206ENST00000496822 URB2Q14146 1524 aaKnown RBP27.83■■■□□ 2.05
NEK4-206ENST00000496822 PRDM2Q13029 1718 aa27.82■■■□□ 2.04
NEK4-206ENST00000496822 TOPBP1Q92547 1522 aa27.56■■■□□ 2
NEK4-206ENST00000496822 DNMBPQ6XZF7 1577 aa27.48■■□□□ 1.99
NEK4-206ENST00000496822 IFT140Q96RY7 1462 aa27.47■■□□□ 1.99
NEK4-206ENST00000496822 ZNF608Q9ULD9 1512 aaPredicted RBP27.45■■□□□ 1.98
NEK4-206ENST00000496822 ABCC8Q09428 1581 aa27.44■■□□□ 1.98
NEK4-206ENST00000496822 SUPT5HO00267 1087 aaKnown RBP27.37■■□□□ 1.97
NEK4-206ENST00000496822 POLA1P09884 1462 aaPredicted RBP27.31■■□□□ 1.96
NEK4-206ENST00000496822 EIF4G3O43432 1585 aaKnown RBP27.31■■□□□ 1.96
NEK4-206ENST00000496822 TARBP1Q13395 1621 aaKnown RBP27.3■■□□□ 1.96
NEK4-206ENST00000496822 OSCARQ8IYS5 282 aa27.27■■□□□ 1.96
NEK4-206ENST00000496822 CUX1P39880 1505 aa27.21■■□□□ 1.95
NEK4-206ENST00000496822 AQRO60306 1485 aaKnown RBP eCLIP27.2■■□□□ 1.95
NEK4-206ENST00000496822 RAD54L2Q9Y4B4 1467 aa27.2■■□□□ 1.95
NEK4-206ENST00000496822 FGD5Q6ZNL6 1462 aa27.18■■□□□ 1.94
NEK4-206ENST00000496822 SOGA1O94964 1423 aa27.14■■□□□ 1.93
NEK4-206ENST00000496822 TRIM41Q8WV44 630 aa27.12■■□□□ 1.93
NEK4-206ENST00000496822 TDRD9Q8NDG6 1382 aaKnown RBP27.09■■□□□ 1.93
NEK4-206ENST00000496822 CHD1O14646 1710 aa27.03■■□□□ 1.92
NEK4-206ENST00000496822 WDR97A6NE52 1622 aa26.99■■□□□ 1.91
NEK4-206ENST00000496822 RIMBP3CA6NJZ7 1639 aa26.98■■□□□ 1.91
NEK4-206ENST00000496822 RIMBP3BA6NNM3 1639 aa26.98■■□□□ 1.91
NEK4-206ENST00000496822 RIMBP3Q9UFD9 1639 aa26.98■■□□□ 1.91
NEK4-206ENST00000496822 SNAPC4Q5SXM2 1469 aa26.96■■□□□ 1.91
NEK4-206ENST00000496822 FBLN2P98095 1184 aa26.92■■□□□ 1.9
NEK4-206ENST00000496822 ARHGEF11O15085 1522 aa26.91■■□□□ 1.9
NEK4-206ENST00000496822 GRIN2BQ13224 1484 aa26.89■■□□□ 1.9
NEK4-206ENST00000496822 ABCA10Q8WWZ4 1543 aa26.86■■□□□ 1.89
NEK4-206ENST00000496822 MAGI1Q96QZ7 1491 aaPredicted RBP26.86■■□□□ 1.89
NEK4-206ENST00000496822 SYNJ1O43426 1573 aa26.84■■□□□ 1.89
NEK4-206ENST00000496822 GAPVD1Q14C86 1478 aa26.83■■□□□ 1.89
NEK4-206ENST00000496822 ABCA5Q8WWZ7 1642 aa26.83■■□□□ 1.88
NEK4-206ENST00000496822 BIVM-ERCC5R4GMW8 1640 aa26.83■■□□□ 1.88
NEK4-206ENST00000496822 WRNQ14191 1432 aaPredicted RBP eCLIP26.82■■□□□ 1.88
NEK4-206ENST00000496822 TOP2BQ02880 1626 aa26.82■■□□□ 1.88
NEK4-206ENST00000496822 PBRM1Q86U86 1689 aa26.82■■□□□ 1.88
NEK4-206ENST00000496822 SYNJ2O15056 1496 aa26.77■■□□□ 1.88
NEK4-206ENST00000496822 CHMP7Q8WUX9 453 aaPredicted RBP26.76■■□□□ 1.87
NEK4-206ENST00000496822 CLASP1Q7Z460 1538 aa26.75■■□□□ 1.87
NEK4-206ENST00000496822 ARAP1Q96P48 1450 aa26.69■■□□□ 1.86
NEK4-206ENST00000496822 CYB5RLQ6IPT4 315 aa26.64■■□□□ 1.86
NEK4-206ENST00000496822 ADAMTS12P58397 1594 aa26.61■■□□□ 1.85
NEK4-206ENST00000496822 GRIN2AQ12879 1464 aa26.56■■□□□ 1.84
NEK4-206ENST00000496822 ERICH3Q5RHP9 1530 aa26.52■■□□□ 1.84
NEK4-206ENST00000496822 FHAD1B1AJZ9 1412 aa26.5■■□□□ 1.83
NEK4-206ENST00000496822 CEP170Q5SW79 1584 aa26.49■■□□□ 1.83
NEK4-206ENST00000496822 NUP160Q12769 1436 aa26.47■■□□□ 1.83
NEK4-206ENST00000496822 ERCC6L2Q5T890 1561 aa26.38■■□□□ 1.81
NEK4-206ENST00000496822 SHROOM2Q13796 1616 aa26.32■■□□□ 1.8
NEK4-206ENST00000496822 KIF27Q86VH2 1401 aa26.27■■□□□ 1.8
NEK4-206ENST00000496822 IGF1RP08069 1367 aa26.24■■□□□ 1.79
NEK4-206ENST00000496822 TRHP20396 242 aaPredicted RBP26.24■■□□□ 1.79
NEK4-206ENST00000496822 RUSC2Q8N2Y8 1516 aa26.24■■□□□ 1.79
NEK4-206ENST00000496822 CUL7Q14999 1698 aa26.19■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms