RNA–Protein interactions for RNA: ENST00000496071.5

COMMD3-214, Transcript of COMM domain containing 3, humanhuman

TSL 5

Gene COMMD3, Length 1,150 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-214ENST00000496071 NISCHQ9Y2I1 1504 aa41.75■■■■■ 4.27
COMMD3-214ENST00000496071 CCDC180Q9P1Z9 1646 aa37.26■■■■□ 3.56
COMMD3-214ENST00000496071 ABCC9O60706 1549 aa36.64■■■■□ 3.46
COMMD3-214ENST00000496071 RB1CC1Q8TDY2 1594 aa35.2■■■■□ 3.23
COMMD3-214ENST00000496071 NACADO15069 1562 aa35.09■■■■□ 3.21
COMMD3-214ENST00000496071 DCAF8L2P0C7V8 631 aa35■■■■□ 3.19
COMMD3-214ENST00000496071 MYO15BQ96JP2 1530 aa34.82■■■■□ 3.16
COMMD3-214ENST00000496071 ZCCHC6Q5VYS8 1495 aaKnown RBP34.71■■■■□ 3.15
COMMD3-214ENST00000496071 DCAF1Q9Y4B6 1507 aa34.56■■■■□ 3.12
COMMD3-214ENST00000496071 UNC13AQ9UPW8 1703 aa34.36■■■■□ 3.09
COMMD3-214ENST00000496071 PABPN1Q86U42 306 aaKnown RBP eCLIP34.18■■■■□ 3.06
COMMD3-214ENST00000496071 BICRAQ9NZM4 1560 aa34.08■■■■□ 3.05
COMMD3-214ENST00000496071 SCRIBQ14160 1630 aa33.91■■■■□ 3.02
COMMD3-214ENST00000496071 DNAJC5BQ9UF47 199 aa33.83■■■■□ 3.01
COMMD3-214ENST00000496071 SHROOM4Q9ULL8 1493 aa33.77■■■■□ 3
COMMD3-214ENST00000496071 EIF4G1Q04637 1599 aaKnown RBP33.21■■■□□ 2.91
COMMD3-214ENST00000496071 CC2D2AQ9P2K1 1620 aa33.15■■■□□ 2.9
COMMD3-214ENST00000496071 CECR2Q9BXF3 1484 aa32.97■■■□□ 2.87
COMMD3-214ENST00000496071 SMARCA4P51532 1647 aa32.44■■■□□ 2.78
COMMD3-214ENST00000496071 BAZ1AQ9NRL2 1556 aaPredicted RBP32.4■■■□□ 2.78
COMMD3-214ENST00000496071 NCAPD3P42695 1498 aa32.37■■■□□ 2.77
COMMD3-214ENST00000496071 ATAD2BQ9ULI0 1458 aa32.33■■■□□ 2.77
COMMD3-214ENST00000496071 SMARCA2P51531 1590 aa32.32■■■□□ 2.76
COMMD3-214ENST00000496071 HMGXB3Q12766 1538 aa32.19■■■□□ 2.74
COMMD3-214ENST00000496071 MROH2BQ7Z745 1585 aa32.15■■■□□ 2.74
COMMD3-214ENST00000496071 PEG3Q9GZU2 1588 aa32.15■■■□□ 2.74
COMMD3-214ENST00000496071 BAZ1BQ9UIG0 1483 aaKnown RBP32.06■■■□□ 2.72
COMMD3-214ENST00000496071 WIZO95785 1651 aa31.8■■■□□ 2.68
COMMD3-214ENST00000496071 RSF1Q96T23 1441 aaPredicted RBP31.7■■■□□ 2.67
COMMD3-214ENST00000496071 ERCC6Q03468 1493 aa31.63■■■□□ 2.65
COMMD3-214ENST00000496071 NESP48681 1621 aa31.61■■■□□ 2.65
COMMD3-214ENST00000496071 LAMC3Q9Y6N6 1575 aa31.57■■■□□ 2.64
COMMD3-214ENST00000496071 TOP2AP11388 1531 aaKnown RBP31.45■■■□□ 2.63
COMMD3-214ENST00000496071 AEBP2Q6ZN18 517 aaPredicted RBP31.43■■■□□ 2.62
COMMD3-214ENST00000496071 CADPSQ9ULU8 1353 aa31.42■■■□□ 2.62
COMMD3-214ENST00000496071 CUX2O14529 1486 aa31.4■■■□□ 2.62
COMMD3-214ENST00000496071 PDS5BQ9NTI5 1447 aa31.38■■■□□ 2.61
COMMD3-214ENST00000496071 KIF21AQ7Z4S6 1674 aa31.26■■■□□ 2.6
COMMD3-214ENST00000496071 THOC2Q8NI27 1593 aaKnown RBP31.21■■■□□ 2.59
COMMD3-214ENST00000496071 CFTRP13569 1480 aa31.17■■■□□ 2.58
COMMD3-214ENST00000496071 CCDC88BA6NC98 1476 aa31.08■■■□□ 2.57
COMMD3-214ENST00000496071 FANCD2Q9BXW9 1451 aa31.04■■■□□ 2.56
COMMD3-214ENST00000496071 MRC2Q9UBG0 1479 aa31.03■■■□□ 2.56
COMMD3-214ENST00000496071 CEP164Q9UPV0 1460 aa31.03■■■□□ 2.56
COMMD3-214ENST00000496071 PRDM2Q13029 1718 aa30.95■■■□□ 2.54
COMMD3-214ENST00000496071 WDR62O43379 1518 aa30.93■■■□□ 2.54
COMMD3-214ENST00000496071 DNAJC5Q9H3Z4 198 aa30.73■■■□□ 2.51
COMMD3-214ENST00000496071 URB2Q14146 1524 aaKnown RBP30.73■■■□□ 2.51
COMMD3-214ENST00000496071 SUPT5HO00267 1087 aaKnown RBP30.72■■■□□ 2.51
COMMD3-214ENST00000496071 ABCC8Q09428 1581 aa30.57■■■□□ 2.48
COMMD3-214ENST00000496071 TOPBP1Q92547 1522 aa30.52■■■□□ 2.48
COMMD3-214ENST00000496071 DNMBPQ6XZF7 1577 aa30.46■■■□□ 2.47
COMMD3-214ENST00000496071 IFT140Q96RY7 1462 aa30.4■■■□□ 2.46
COMMD3-214ENST00000496071 ZNF608Q9ULD9 1512 aaPredicted RBP30.23■■■□□ 2.43
COMMD3-214ENST00000496071 POLA1P09884 1462 aaPredicted RBP30.23■■■□□ 2.43
COMMD3-214ENST00000496071 TARBP1Q13395 1621 aaKnown RBP30.2■■■□□ 2.43
COMMD3-214ENST00000496071 CUX1P39880 1505 aa30.17■■■□□ 2.42
COMMD3-214ENST00000496071 SOGA1O94964 1423 aa30.13■■■□□ 2.41
COMMD3-214ENST00000496071 EIF4G3O43432 1585 aaKnown RBP30.12■■■□□ 2.41
COMMD3-214ENST00000496071 FGD5Q6ZNL6 1462 aa30.12■■■□□ 2.41
COMMD3-214ENST00000496071 OSCARQ8IYS5 282 aa30.09■■■□□ 2.41
COMMD3-214ENST00000496071 RAD54L2Q9Y4B4 1467 aa30.08■■■□□ 2.41
COMMD3-214ENST00000496071 AQRO60306 1485 aaKnown RBP eCLIP30.06■■■□□ 2.46e-7■■■■□ 24.7
COMMD3-214ENST00000496071 WDR97A6NE52 1622 aa30■■■□□ 2.39
COMMD3-214ENST00000496071 TDRD9Q8NDG6 1382 aaKnown RBP29.96■■■□□ 2.39
COMMD3-214ENST00000496071 WRNQ14191 1432 aaPredicted RBP eCLIP29.91■■■□□ 2.38
COMMD3-214ENST00000496071 TOP2BQ02880 1626 aa29.88■■■□□ 2.37
COMMD3-214ENST00000496071 BIVM-ERCC5R4GMW8 1640 aa29.88■■■□□ 2.37
COMMD3-214ENST00000496071 ABCA10Q8WWZ4 1543 aa29.84■■■□□ 2.37
COMMD3-214ENST00000496071 SYNJ1O43426 1573 aa29.81■■■□□ 2.36
COMMD3-214ENST00000496071 CHD1O14646 1710 aa29.81■■■□□ 2.36
COMMD3-214ENST00000496071 GRIN2BQ13224 1484 aa29.8■■■□□ 2.36
COMMD3-214ENST00000496071 FBLN2P98095 1184 aa29.78■■■□□ 2.36
COMMD3-214ENST00000496071 CHIC1Q5VXU3 224 aa29.78■■■□□ 2.36
COMMD3-214ENST00000496071 GAPVD1Q14C86 1478 aa29.77■■■□□ 2.36
COMMD3-214ENST00000496071 SNAPC4Q5SXM2 1469 aa29.76■■■□□ 2.35
COMMD3-214ENST00000496071 MAGI1Q96QZ7 1491 aaPredicted RBP29.76■■■□□ 2.35
COMMD3-214ENST00000496071 ABCA5Q8WWZ7 1642 aa29.72■■■□□ 2.35
COMMD3-214ENST00000496071 PBRM1Q86U86 1689 aa29.72■■■□□ 2.35
COMMD3-214ENST00000496071 CHMP7Q8WUX9 453 aaPredicted RBP29.68■■■□□ 2.34
COMMD3-214ENST00000496071 SYNJ2O15056 1496 aa29.64■■■□□ 2.34
COMMD3-214ENST00000496071 TRIM41Q8WV44 630 aa29.58■■■□□ 2.33
COMMD3-214ENST00000496071 RIMBP3CA6NJZ7 1639 aa29.57■■■□□ 2.32
COMMD3-214ENST00000496071 RIMBP3BA6NNM3 1639 aa29.57■■■□□ 2.32
COMMD3-214ENST00000496071 RIMBP3Q9UFD9 1639 aa29.57■■■□□ 2.32
COMMD3-214ENST00000496071 ARHGEF11O15085 1522 aa29.54■■■□□ 2.32
COMMD3-214ENST00000496071 ERICH3Q5RHP9 1530 aa29.5■■■□□ 2.31
COMMD3-214ENST00000496071 CLASP1Q7Z460 1538 aa29.47■■■□□ 2.31
COMMD3-214ENST00000496071 ADAMTS12P58397 1594 aa29.44■■■□□ 2.3
COMMD3-214ENST00000496071 FHAD1B1AJZ9 1412 aa29.43■■■□□ 2.3
COMMD3-214ENST00000496071 GRIN2AQ12879 1464 aa29.41■■■□□ 2.3
COMMD3-214ENST00000496071 KIF27Q86VH2 1401 aa29.33■■■□□ 2.29
COMMD3-214ENST00000496071 CYB5RLQ6IPT4 315 aa29.3■■■□□ 2.28
COMMD3-214ENST00000496071 NUP160Q12769 1436 aa29.28■■■□□ 2.28
COMMD3-214ENST00000496071 ARAP1Q96P48 1450 aa29.27■■■□□ 2.28
COMMD3-214ENST00000496071 CEP170Q5SW79 1584 aa29.25■■■□□ 2.27
COMMD3-214ENST00000496071 IGF1RP08069 1367 aa29.22■■■□□ 2.27
COMMD3-214ENST00000496071 CUL7Q14999 1698 aa29.18■■■□□ 2.26
COMMD3-214ENST00000496071 SHROOM2Q13796 1616 aa29.1■■■□□ 2.25
COMMD3-214ENST00000496071 CARMIL1Q5VZK9 1371 aa29.05■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 96.6 ms