RNA–Protein interactions for RNA: ENST00000495509.6

PHF1-211, Transcript of PHD finger protein 1, humanhuman

TSL 2

Gene PHF1, Length 1,752 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF1-211ENST00000495509 NISCHQ9Y2I1 1504 aa36.52■■■■□ 3.44
PHF1-211ENST00000495509 CCDC180Q9P1Z9 1646 aa32■■■□□ 2.71
PHF1-211ENST00000495509 ABCC9O60706 1549 aa30.76■■■□□ 2.51
PHF1-211ENST00000495509 ZCCHC6Q5VYS8 1495 aaKnown RBP30.56■■■□□ 2.48
PHF1-211ENST00000495509 DCAF8L2P0C7V8 631 aa30.41■■■□□ 2.46
PHF1-211ENST00000495509 DCAF1Q9Y4B6 1507 aa30.14■■■□□ 2.42
PHF1-211ENST00000495509 MYO15BQ96JP2 1530 aa29.94■■■□□ 2.38
PHF1-211ENST00000495509 NACADO15069 1562 aa29.93■■■□□ 2.38
PHF1-211ENST00000495509 RB1CC1Q8TDY2 1594 aa29.78■■■□□ 2.36
PHF1-211ENST00000495509 SHROOM4Q9ULL8 1493 aa29.55■■■□□ 2.32
PHF1-211ENST00000495509 SCRIBQ14160 1630 aa29.43■■■□□ 2.3
PHF1-211ENST00000495509 UNC13AQ9UPW8 1703 aa29.22■■■□□ 2.27
PHF1-211ENST00000495509 PABPN1Q86U42 306 aaKnown RBP eCLIP28.97■■■□□ 2.235e-7■■■□□ 18
PHF1-211ENST00000495509 BICRAQ9NZM4 1560 aa28.94■■■□□ 2.22
PHF1-211ENST00000495509 CECR2Q9BXF3 1484 aa28.46■■■□□ 2.15
PHF1-211ENST00000495509 MROH2BQ7Z745 1585 aa28.23■■■□□ 2.11
PHF1-211ENST00000495509 SUPT5HO00267 1087 aaKnown RBP28.21■■■□□ 2.11
PHF1-211ENST00000495509 BAZ1AQ9NRL2 1556 aaPredicted RBP28.2■■■□□ 2.11
PHF1-211ENST00000495509 RSF1Q96T23 1441 aaPredicted RBP28.18■■■□□ 2.1
PHF1-211ENST00000495509 SMARCA4P51532 1647 aa28.15■■■□□ 2.1
PHF1-211ENST00000495509 EIF4G1Q04637 1599 aaKnown RBP28.09■■■□□ 2.09
PHF1-211ENST00000495509 WIZO95785 1651 aa27.97■■■□□ 2.07
PHF1-211ENST00000495509 ATAD2BQ9ULI0 1458 aa27.82■■■□□ 2.04
PHF1-211ENST00000495509 PEG3Q9GZU2 1588 aa27.81■■■□□ 2.04
PHF1-211ENST00000495509 CC2D2AQ9P2K1 1620 aa27.8■■■□□ 2.04
PHF1-211ENST00000495509 SMARCA2P51531 1590 aa27.75■■■□□ 2.03
PHF1-211ENST00000495509 NCAPD3P42695 1498 aa27.66■■■□□ 2.02
PHF1-211ENST00000495509 DNAJC5BQ9UF47 199 aa27.63■■■□□ 2.01
PHF1-211ENST00000495509 BAZ1BQ9UIG0 1483 aaKnown RBP27.62■■■□□ 2.01
PHF1-211ENST00000495509 TOP2AP11388 1531 aaKnown RBP27.61■■■□□ 2.01
PHF1-211ENST00000495509 HMGXB3Q12766 1538 aa27.54■■■□□ 2
PHF1-211ENST00000495509 CCDC88BA6NC98 1476 aa27.38■■□□□ 1.97
PHF1-211ENST00000495509 CADPSQ9ULU8 1353 aa26.93■■□□□ 1.9
PHF1-211ENST00000495509 CFTRP13569 1480 aa26.92■■□□□ 1.9
PHF1-211ENST00000495509 NESP48681 1621 aa26.88■■□□□ 1.89
PHF1-211ENST00000495509 LAMC3Q9Y6N6 1575 aa26.76■■□□□ 1.87
PHF1-211ENST00000495509 CHIC1Q5VXU3 224 aa26.76■■□□□ 1.87
PHF1-211ENST00000495509 PRDM2Q13029 1718 aa26.71■■□□□ 1.87
PHF1-211ENST00000495509 ABCC8Q09428 1581 aa26.66■■□□□ 1.86
PHF1-211ENST00000495509 FANCD2Q9BXW9 1451 aa26.62■■□□□ 1.85
PHF1-211ENST00000495509 PDS5BQ9NTI5 1447 aa26.58■■□□□ 1.84
PHF1-211ENST00000495509 TRIM41Q8WV44 630 aa26.52■■□□□ 1.84
PHF1-211ENST00000495509 KIF21AQ7Z4S6 1674 aa26.52■■□□□ 1.84
PHF1-211ENST00000495509 WRNQ14191 1432 aaPredicted RBP eCLIP26.51■■□□□ 1.83
PHF1-211ENST00000495509 CEP164Q9UPV0 1460 aa26.48■■□□□ 1.83
PHF1-211ENST00000495509 SYNJ1O43426 1573 aa26.43■■□□□ 1.82
PHF1-211ENST00000495509 CUX1P39880 1505 aa26.41■■□□□ 1.82
PHF1-211ENST00000495509 ERCC6Q03468 1493 aa26.38■■□□□ 1.81
PHF1-211ENST00000495509 TOP2BQ02880 1626 aa26.34■■□□□ 1.81
PHF1-211ENST00000495509 URB2Q14146 1524 aaKnown RBP26.33■■□□□ 1.81
PHF1-211ENST00000495509 BIVM-ERCC5R4GMW8 1640 aa26.31■■□□□ 1.8
PHF1-211ENST00000495509 TOPBP1Q92547 1522 aa26.29■■□□□ 1.8
PHF1-211ENST00000495509 DNMBPQ6XZF7 1577 aa26.27■■□□□ 1.8
PHF1-211ENST00000495509 MRC2Q9UBG0 1479 aa26.26■■□□□ 1.8
PHF1-211ENST00000495509 FGD5Q6ZNL6 1462 aa26.18■■□□□ 1.78
PHF1-211ENST00000495509 THOC2Q8NI27 1593 aaKnown RBP26.17■■□□□ 1.78
PHF1-211ENST00000495509 WDR62O43379 1518 aa26.14■■□□□ 1.77
PHF1-211ENST00000495509 POLA1P09884 1462 aaPredicted RBP26.12■■□□□ 1.77
PHF1-211ENST00000495509 SOGA1O94964 1423 aa26.09■■□□□ 1.77
PHF1-211ENST00000495509 FAM9AQ8IZU1 332 aaPredicted RBP26.07■■□□□ 1.76
PHF1-211ENST00000495509 RAD54L2Q9Y4B4 1467 aa26.07■■□□□ 1.76
PHF1-211ENST00000495509 RUSC2Q8N2Y8 1516 aa26.03■■□□□ 1.76
PHF1-211ENST00000495509 CUX2O14529 1486 aa26■■□□□ 1.75
PHF1-211ENST00000495509 TARBP1Q13395 1621 aaKnown RBP25.93■■□□□ 1.74
PHF1-211ENST00000495509 ABCA10Q8WWZ4 1543 aa25.92■■□□□ 1.74
PHF1-211ENST00000495509 TDRD9Q8NDG6 1382 aaKnown RBP25.87■■□□□ 1.73
PHF1-211ENST00000495509 KIF27Q86VH2 1401 aa25.87■■□□□ 1.73
PHF1-211ENST00000495509 IFT140Q96RY7 1462 aa25.87■■□□□ 1.73
PHF1-211ENST00000495509 WDR97A6NE52 1622 aa25.86■■□□□ 1.73
PHF1-211ENST00000495509 CSRNP3Q8WYN3 585 aa25.84■■□□□ 1.73
PHF1-211ENST00000495509 EEA1Q15075 1411 aa25.84■■□□□ 1.73
PHF1-211ENST00000495509 ZNF608Q9ULD9 1512 aaPredicted RBP25.81■■□□□ 1.72
PHF1-211ENST00000495509 AQRO60306 1485 aaKnown RBP eCLIP25.78■■□□□ 1.728e-8■■■□□ 18.9
PHF1-211ENST00000495509 LOC105371045A0A1W2PR82 267 aa25.77■■□□□ 1.72
PHF1-211ENST00000495509 EHMT2Q96KQ7 1210 aa25.76■■□□□ 1.71
PHF1-211ENST00000495509 IGF1RP08069 1367 aa25.74■■□□□ 1.71
PHF1-211ENST00000495509 GAPVD1Q14C86 1478 aa25.74■■□□□ 1.71
PHF1-211ENST00000495509 ABCA5Q8WWZ7 1642 aa25.73■■□□□ 1.71
PHF1-211ENST00000495509 EIF4G3O43432 1585 aaKnown RBP25.66■■□□□ 1.7
PHF1-211ENST00000495509 PBRM1Q86U86 1689 aa25.61■■□□□ 1.69
PHF1-211ENST00000495509 ERICH3Q5RHP9 1530 aa25.6■■□□□ 1.69
PHF1-211ENST00000495509 PRXQ9BXM0 1461 aa25.59■■□□□ 1.69
PHF1-211ENST00000495509 GRIN2BQ13224 1484 aa25.59■■□□□ 1.69
PHF1-211ENST00000495509 CARMIL1Q5VZK9 1371 aa25.58■■□□□ 1.69
PHF1-211ENST00000495509 RAPGEF2Q9Y4G8 1499 aa25.56■■□□□ 1.68
PHF1-211ENST00000495509 KIF21BO75037 1637 aa25.55■■□□□ 1.68
PHF1-211ENST00000495509 CUL7Q14999 1698 aa25.5■■□□□ 1.67
PHF1-211ENST00000495509 GOLGA3Q08378 1498 aa25.49■■□□□ 1.67
PHF1-211ENST00000495509 SNAPC4Q5SXM2 1469 aa25.49■■□□□ 1.67
PHF1-211ENST00000495509 UBTFP17480 764 aaKnown RBP25.48■■□□□ 1.67
PHF1-211ENST00000495509 FHAD1B1AJZ9 1412 aa25.44■■□□□ 1.66
PHF1-211ENST00000495509 ADAMTS12P58397 1594 aa25.43■■□□□ 1.66
PHF1-211ENST00000495509 MAGI1Q96QZ7 1491 aaPredicted RBP25.41■■□□□ 1.66
PHF1-211ENST00000495509 FBLN2P98095 1184 aa25.36■■□□□ 1.65
PHF1-211ENST00000495509 TNIKQ9UKE5 1360 aa25.35■■□□□ 1.65
PHF1-211ENST00000495509 CHMP7Q8WUX9 453 aaPredicted RBP25.34■■□□□ 1.65
PHF1-211ENST00000495509 SYNJ2O15056 1496 aa25.33■■□□□ 1.65
PHF1-211ENST00000495509 GRIN2AQ12879 1464 aa25.28■■□□□ 1.64
PHF1-211ENST00000495509 RANGAP1P46060 587 aaPredicted RBP25.26■■□□□ 1.63
PHF1-211ENST00000495509 CHD1O14646 1710 aa25.21■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms