RNA–Protein interactions for RNA: ENST00000494973.1

APTX-231, Transcript of aprataxin, humanhuman

TSL 4

Gene APTX, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APTX-231ENST00000494973 NISCHQ9Y2I1 1504 aa31.76■■■□□ 2.68
APTX-231ENST00000494973 CCDC180Q9P1Z9 1646 aa28.1■■■□□ 2.09
APTX-231ENST00000494973 ABCC9O60706 1549 aa26.76■■□□□ 1.87
APTX-231ENST00000494973 ZCCHC6Q5VYS8 1495 aaKnown RBP26.61■■□□□ 1.85
APTX-231ENST00000494973 DCAF1Q9Y4B6 1507 aa26.41■■□□□ 1.82
APTX-231ENST00000494973 MYO15BQ96JP2 1530 aa26.34■■□□□ 1.81
APTX-231ENST00000494973 NACADO15069 1562 aa26.26■■□□□ 1.79
APTX-231ENST00000494973 DCAF8L2P0C7V8 631 aa26.18■■□□□ 1.78
APTX-231ENST00000494973 RB1CC1Q8TDY2 1594 aa26.14■■□□□ 1.78
APTX-231ENST00000494973 SCRIBQ14160 1630 aa25.55■■□□□ 1.68
APTX-231ENST00000494973 UNC13AQ9UPW8 1703 aa25.45■■□□□ 1.66
APTX-231ENST00000494973 SHROOM4Q9ULL8 1493 aa25.29■■□□□ 1.64
APTX-231ENST00000494973 BICRAQ9NZM4 1560 aa25.2■■□□□ 1.62
APTX-231ENST00000494973 PABPN1Q86U42 306 aaKnown RBP eCLIP25.03■■□□□ 1.6
APTX-231ENST00000494973 BAZ1AQ9NRL2 1556 aaPredicted RBP24.65■■□□□ 1.54
APTX-231ENST00000494973 CECR2Q9BXF3 1484 aa24.58■■□□□ 1.52
APTX-231ENST00000494973 EIF4G1Q04637 1599 aaKnown RBP24.55■■□□□ 1.52
APTX-231ENST00000494973 SMARCA4P51532 1647 aa24.54■■□□□ 1.52
APTX-231ENST00000494973 MROH2BQ7Z745 1585 aa24.42■■□□□ 1.5
APTX-231ENST00000494973 RSF1Q96T23 1441 aaPredicted RBP24.36■■□□□ 1.49
APTX-231ENST00000494973 PEG3Q9GZU2 1588 aa24.33■■□□□ 1.49
APTX-231ENST00000494973 SMARCA2P51531 1590 aa24.33■■□□□ 1.48
APTX-231ENST00000494973 CC2D2AQ9P2K1 1620 aa24.28■■□□□ 1.48
APTX-231ENST00000494973 ATAD2BQ9ULI0 1458 aa24.24■■□□□ 1.47
APTX-231ENST00000494973 WIZO95785 1651 aa24.19■■□□□ 1.46
APTX-231ENST00000494973 NCAPD3P42695 1498 aa24.17■■□□□ 1.46
APTX-231ENST00000494973 HMGXB3Q12766 1538 aa24.15■■□□□ 1.46
APTX-231ENST00000494973 SUPT5HO00267 1087 aaKnown RBP24.11■■□□□ 1.45
APTX-231ENST00000494973 BAZ1BQ9UIG0 1483 aaKnown RBP24.11■■□□□ 1.45
APTX-231ENST00000494973 TOP2AP11388 1531 aaKnown RBP24.07■■□□□ 1.44
APTX-231ENST00000494973 DNAJC5BQ9UF47 199 aa23.89■■□□□ 1.41
APTX-231ENST00000494973 CCDC88BA6NC98 1476 aa23.69■■□□□ 1.38
APTX-231ENST00000494973 LAMC3Q9Y6N6 1575 aa23.49■■□□□ 1.35
APTX-231ENST00000494973 CADPSQ9ULU8 1353 aa23.48■■□□□ 1.35
APTX-231ENST00000494973 CFTRP13569 1480 aa23.47■■□□□ 1.35
APTX-231ENST00000494973 PRDM2Q13029 1718 aa23.42■■□□□ 1.34
APTX-231ENST00000494973 PDS5BQ9NTI5 1447 aa23.31■■□□□ 1.32
APTX-231ENST00000494973 NESP48681 1621 aa23.29■■□□□ 1.32
APTX-231ENST00000494973 FANCD2Q9BXW9 1451 aa23.21■■□□□ 1.31
APTX-231ENST00000494973 CEP164Q9UPV0 1460 aa23.17■■□□□ 1.3
APTX-231ENST00000494973 ERCC6Q03468 1493 aa23.12■■□□□ 1.29
APTX-231ENST00000494973 KIF21AQ7Z4S6 1674 aa23.1■■□□□ 1.29
APTX-231ENST00000494973 ABCC8Q09428 1581 aa23.05■■□□□ 1.28
APTX-231ENST00000494973 WRNQ14191 1432 aaPredicted RBP eCLIP23.02■■□□□ 1.28
APTX-231ENST00000494973 MRC2Q9UBG0 1479 aa23■■□□□ 1.27
APTX-231ENST00000494973 DNMBPQ6XZF7 1577 aa22.97■■□□□ 1.27
APTX-231ENST00000494973 TOP2BQ02880 1626 aa22.93■■□□□ 1.26
APTX-231ENST00000494973 BIVM-ERCC5R4GMW8 1640 aa22.93■■□□□ 1.26
APTX-231ENST00000494973 THOC2Q8NI27 1593 aaKnown RBP22.92■■□□□ 1.26
APTX-231ENST00000494973 WDR62O43379 1518 aa22.92■■□□□ 1.26
APTX-231ENST00000494973 CUX1P39880 1505 aa22.9■■□□□ 1.26
APTX-231ENST00000494973 TOPBP1Q92547 1522 aa22.9■■□□□ 1.26
APTX-231ENST00000494973 URB2Q14146 1524 aaKnown RBP22.89■■□□□ 1.26
APTX-231ENST00000494973 SYNJ1O43426 1573 aa22.88■■□□□ 1.25
APTX-231ENST00000494973 CHIC1Q5VXU3 224 aa22.85■■□□□ 1.25
APTX-231ENST00000494973 TRIM41Q8WV44 630 aa22.83■■□□□ 1.25
APTX-231ENST00000494973 FGD5Q6ZNL6 1462 aa22.76■■□□□ 1.23
APTX-231ENST00000494973 POLA1P09884 1462 aaPredicted RBP22.73■■□□□ 1.23
APTX-231ENST00000494973 CUX2O14529 1486 aa22.72■■□□□ 1.23
APTX-231ENST00000494973 IFT140Q96RY7 1462 aa22.67■■□□□ 1.22
APTX-231ENST00000494973 SOGA1O94964 1423 aa22.65■■□□□ 1.22
APTX-231ENST00000494973 WDR97A6NE52 1622 aa22.62■■□□□ 1.21
APTX-231ENST00000494973 ABCA10Q8WWZ4 1543 aa22.62■■□□□ 1.21
APTX-231ENST00000494973 TARBP1Q13395 1621 aaKnown RBP22.59■■□□□ 1.21
APTX-231ENST00000494973 EEA1Q15075 1411 aa22.56■■□□□ 1.2
APTX-231ENST00000494973 RAD54L2Q9Y4B4 1467 aa22.55■■□□□ 1.2
APTX-231ENST00000494973 KIF27Q86VH2 1401 aa22.53■■□□□ 1.2
APTX-231ENST00000494973 ABCA5Q8WWZ7 1642 aa22.47■■□□□ 1.19
APTX-231ENST00000494973 GAPVD1Q14C86 1478 aa22.42■■□□□ 1.18
APTX-231ENST00000494973 EIF4G3O43432 1585 aaKnown RBP22.42■■□□□ 1.18
APTX-231ENST00000494973 TDRD9Q8NDG6 1382 aaKnown RBP22.38■■□□□ 1.17
APTX-231ENST00000494973 ERICH3Q5RHP9 1530 aa22.38■■□□□ 1.17
APTX-231ENST00000494973 ZNF608Q9ULD9 1512 aaPredicted RBP22.38■■□□□ 1.17
APTX-231ENST00000494973 GRIN2BQ13224 1484 aa22.37■■□□□ 1.17
APTX-231ENST00000494973 PBRM1Q86U86 1689 aa22.36■■□□□ 1.17
APTX-231ENST00000494973 AQRO60306 1485 aaKnown RBP eCLIP22.34■■□□□ 1.17
APTX-231ENST00000494973 CUL7Q14999 1698 aa22.33■■□□□ 1.16
APTX-231ENST00000494973 RUSC2Q8N2Y8 1516 aa22.31■■□□□ 1.16
APTX-231ENST00000494973 CSRNP3Q8WYN3 585 aa22.29■■□□□ 1.16
APTX-231ENST00000494973 MAGI1Q96QZ7 1491 aaPredicted RBP22.28■■□□□ 1.16
APTX-231ENST00000494973 IGF1RP08069 1367 aa22.26■■□□□ 1.15
APTX-231ENST00000494973 FAM9AQ8IZU1 332 aaPredicted RBP22.23■■□□□ 1.15
APTX-231ENST00000494973 ADAMTS12P58397 1594 aa22.22■■□□□ 1.15
APTX-231ENST00000494973 KIF21BO75037 1637 aa22.22■■□□□ 1.15
APTX-231ENST00000494973 FHAD1B1AJZ9 1412 aa22.22■■□□□ 1.15
APTX-231ENST00000494973 SNAPC4Q5SXM2 1469 aa22.22■■□□□ 1.15
APTX-231ENST00000494973 PRXQ9BXM0 1461 aa22.2■■□□□ 1.14
APTX-231ENST00000494973 CARMIL1Q5VZK9 1371 aa22.19■■□□□ 1.14
APTX-231ENST00000494973 RAPGEF2Q9Y4G8 1499 aa22.16■■□□□ 1.14
APTX-231ENST00000494973 SYNJ2O15056 1496 aa22.15■■□□□ 1.14
APTX-231ENST00000494973 GOLGA3Q08378 1498 aa22.13■■□□□ 1.13
APTX-231ENST00000494973 GRIN2AQ12879 1464 aa22.06■■□□□ 1.12
APTX-231ENST00000494973 CHMP7Q8WUX9 453 aaPredicted RBP22.05■■□□□ 1.12
APTX-231ENST00000494973 CHD1O14646 1710 aa22■■□□□ 1.11
APTX-231ENST00000494973 FBLN2P98095 1184 aa21.97■■□□□ 1.11
APTX-231ENST00000494973 CTTNBP2Q8WZ74 1663 aa21.95■■□□□ 1.1
APTX-231ENST00000494973 NUP160Q12769 1436 aa21.94■■□□□ 1.1
APTX-231ENST00000494973 UBTFP17480 764 aaKnown RBP21.93■■□□□ 1.1
APTX-231ENST00000494973 TNIKQ9UKE5 1360 aa21.92■■□□□ 1.1
APTX-231ENST00000494973 KIAA0586Q9BVV6 1533 aa21.89■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms