RNA–Protein interactions for RNA: ENST00000494836.2

YIF1A-209, Transcript of Yip1 interacting factor homolog A, membrane trafficking protein, humanhuman

TSL 2

Gene YIF1A, Length 540 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YIF1A-209ENST00000494836 NISCHQ9Y2I1 1504 aa39.26■■■■□ 3.88
YIF1A-209ENST00000494836 CCDC180Q9P1Z9 1646 aa34.9■■■■□ 3.18
YIF1A-209ENST00000494836 ABCC9O60706 1549 aa34.01■■■■□ 3.04
YIF1A-209ENST00000494836 RB1CC1Q8TDY2 1594 aa32.79■■■□□ 2.84
YIF1A-209ENST00000494836 NACADO15069 1562 aa32.76■■■□□ 2.84
YIF1A-209ENST00000494836 ZCCHC6Q5VYS8 1495 aaKnown RBP32.74■■■□□ 2.83
YIF1A-209ENST00000494836 DCAF8L2P0C7V8 631 aa32.74■■■□□ 2.83
YIF1A-209ENST00000494836 MYO15BQ96JP2 1530 aa32.6■■■□□ 2.81
YIF1A-209ENST00000494836 DCAF1Q9Y4B6 1507 aa32.5■■■□□ 2.79
YIF1A-209ENST00000494836 UNC13AQ9UPW8 1703 aa32.03■■■□□ 2.72
YIF1A-209ENST00000494836 SCRIBQ14160 1630 aa31.84■■■□□ 2.69
YIF1A-209ENST00000494836 PABPN1Q86U42 306 aaKnown RBP eCLIP31.77■■■□□ 2.68
YIF1A-209ENST00000494836 BICRAQ9NZM4 1560 aa31.77■■■□□ 2.68
YIF1A-209ENST00000494836 SHROOM4Q9ULL8 1493 aa31.48■■■□□ 2.63
YIF1A-209ENST00000494836 DNAJC5BQ9UF47 199 aa31.06■■■□□ 2.56
YIF1A-209ENST00000494836 EIF4G1Q04637 1599 aaKnown RBP30.94■■■□□ 2.54
YIF1A-209ENST00000494836 CC2D2AQ9P2K1 1620 aa30.78■■■□□ 2.52
YIF1A-209ENST00000494836 CECR2Q9BXF3 1484 aa30.56■■■□□ 2.48
YIF1A-209ENST00000494836 SMARCA4P51532 1647 aa30.47■■■□□ 2.47
YIF1A-209ENST00000494836 BAZ1AQ9NRL2 1556 aaPredicted RBP30.45■■■□□ 2.46
YIF1A-209ENST00000494836 MROH2BQ7Z745 1585 aa30.25■■■□□ 2.43
YIF1A-209ENST00000494836 ATAD2BQ9ULI0 1458 aa30.25■■■□□ 2.43
YIF1A-209ENST00000494836 SMARCA2P51531 1590 aa30.24■■■□□ 2.43
YIF1A-209ENST00000494836 NCAPD3P42695 1498 aa30.21■■■□□ 2.43
YIF1A-209ENST00000494836 PEG3Q9GZU2 1588 aa30.15■■■□□ 2.42
YIF1A-209ENST00000494836 HMGXB3Q12766 1538 aa30.11■■■□□ 2.41
YIF1A-209ENST00000494836 BAZ1BQ9UIG0 1483 aaKnown RBP30.03■■■□□ 2.4
YIF1A-209ENST00000494836 RSF1Q96T23 1441 aaPredicted RBP29.95■■■□□ 2.38
YIF1A-209ENST00000494836 WIZO95785 1651 aa29.95■■■□□ 2.38
YIF1A-209ENST00000494836 TOP2AP11388 1531 aaKnown RBP29.66■■■□□ 2.34
YIF1A-209ENST00000494836 NESP48681 1621 aa29.45■■■□□ 2.31
YIF1A-209ENST00000494836 LAMC3Q9Y6N6 1575 aa29.43■■■□□ 2.3
YIF1A-209ENST00000494836 CADPSQ9ULU8 1353 aa29.34■■■□□ 2.29
YIF1A-209ENST00000494836 ERCC6Q03468 1493 aa29.34■■■□□ 2.29
YIF1A-209ENST00000494836 CCDC88BA6NC98 1476 aa29.27■■■□□ 2.28
YIF1A-209ENST00000494836 SUPT5HO00267 1087 aaKnown RBP29.26■■■□□ 2.27
YIF1A-209ENST00000494836 PDS5BQ9NTI5 1447 aa29.21■■■□□ 2.27
YIF1A-209ENST00000494836 CFTRP13569 1480 aa29.19■■■□□ 2.26
YIF1A-209ENST00000494836 KIF21AQ7Z4S6 1674 aa29.14■■■□□ 2.26
YIF1A-209ENST00000494836 FANCD2Q9BXW9 1451 aa29.02■■■□□ 2.24
YIF1A-209ENST00000494836 THOC2Q8NI27 1593 aaKnown RBP29.01■■■□□ 2.24
YIF1A-209ENST00000494836 PRDM2Q13029 1718 aa29.01■■■□□ 2.23
YIF1A-209ENST00000494836 CEP164Q9UPV0 1460 aa28.98■■■□□ 2.23
YIF1A-209ENST00000494836 CUX2O14529 1486 aa28.97■■■□□ 2.23
YIF1A-209ENST00000494836 MRC2Q9UBG0 1479 aa28.91■■■□□ 2.22
YIF1A-209ENST00000494836 WDR62O43379 1518 aa28.82■■■□□ 2.2
YIF1A-209ENST00000494836 URB2Q14146 1524 aaKnown RBP28.72■■■□□ 2.19
YIF1A-209ENST00000494836 ABCC8Q09428 1581 aa28.58■■■□□ 2.17
YIF1A-209ENST00000494836 TOPBP1Q92547 1522 aa28.57■■■□□ 2.16
YIF1A-209ENST00000494836 DNMBPQ6XZF7 1577 aa28.56■■■□□ 2.16
YIF1A-209ENST00000494836 CUX1P39880 1505 aa28.38■■■□□ 2.13
YIF1A-209ENST00000494836 IFT140Q96RY7 1462 aa28.36■■■□□ 2.13
YIF1A-209ENST00000494836 POLA1P09884 1462 aaPredicted RBP28.34■■■□□ 2.13
YIF1A-209ENST00000494836 FGD5Q6ZNL6 1462 aa28.28■■■□□ 2.12
YIF1A-209ENST00000494836 WRNQ14191 1432 aaPredicted RBP eCLIP28.25■■■□□ 2.11
YIF1A-209ENST00000494836 TARBP1Q13395 1621 aaKnown RBP28.25■■■□□ 2.11
YIF1A-209ENST00000494836 ZNF608Q9ULD9 1512 aaPredicted RBP28.21■■■□□ 2.11
YIF1A-209ENST00000494836 SOGA1O94964 1423 aa28.2■■■□□ 2.11
YIF1A-209ENST00000494836 RAD54L2Q9Y4B4 1467 aa28.2■■■□□ 2.1
YIF1A-209ENST00000494836 TOP2BQ02880 1626 aa28.18■■■□□ 2.1
YIF1A-209ENST00000494836 BIVM-ERCC5R4GMW8 1640 aa28.18■■■□□ 2.1
YIF1A-209ENST00000494836 SYNJ1O43426 1573 aa28.18■■■□□ 2.1
YIF1A-209ENST00000494836 EIF4G3O43432 1585 aaKnown RBP28.14■■■□□ 2.1
YIF1A-209ENST00000494836 AQRO60306 1485 aaKnown RBP eCLIP28.06■■■□□ 2.082e-8■■■■■ 27.5
YIF1A-209ENST00000494836 WDR97A6NE52 1622 aa28.06■■■□□ 2.08
YIF1A-209ENST00000494836 TDRD9Q8NDG6 1382 aaKnown RBP28.03■■■□□ 2.08
YIF1A-209ENST00000494836 ABCA10Q8WWZ4 1543 aa28.01■■■□□ 2.07
YIF1A-209ENST00000494836 DNAJC5Q9H3Z4 198 aa27.91■■■□□ 2.06
YIF1A-209ENST00000494836 ABCA5Q8WWZ7 1642 aa27.9■■■□□ 2.06
YIF1A-209ENST00000494836 GAPVD1Q14C86 1478 aa27.89■■■□□ 2.06
YIF1A-209ENST00000494836 GRIN2BQ13224 1484 aa27.88■■■□□ 2.05
YIF1A-209ENST00000494836 PBRM1Q86U86 1689 aa27.85■■■□□ 2.05
YIF1A-209ENST00000494836 SNAPC4Q5SXM2 1469 aa27.83■■■□□ 2.05
YIF1A-209ENST00000494836 MAGI1Q96QZ7 1491 aaPredicted RBP27.81■■■□□ 2.04
YIF1A-209ENST00000494836 OSCARQ8IYS5 282 aa27.76■■■□□ 2.03
YIF1A-209ENST00000494836 CHD1O14646 1710 aa27.75■■■□□ 2.03
YIF1A-209ENST00000494836 FBLN2P98095 1184 aa27.71■■■□□ 2.03
YIF1A-209ENST00000494836 SYNJ2O15056 1496 aa27.69■■■□□ 2.02
YIF1A-209ENST00000494836 ERICH3Q5RHP9 1530 aa27.68■■■□□ 2.02
YIF1A-209ENST00000494836 KIF27Q86VH2 1401 aa27.66■■■□□ 2.02
YIF1A-209ENST00000494836 CHMP7Q8WUX9 453 aaPredicted RBP27.65■■■□□ 2.02
YIF1A-209ENST00000494836 TRIM41Q8WV44 630 aa27.64■■■□□ 2.02
YIF1A-209ENST00000494836 ADAMTS12P58397 1594 aa27.64■■■□□ 2.01
YIF1A-209ENST00000494836 FHAD1B1AJZ9 1412 aa27.58■■■□□ 2
YIF1A-209ENST00000494836 GRIN2AQ12879 1464 aa27.52■■■□□ 2
YIF1A-209ENST00000494836 IGF1RP08069 1367 aa27.49■■□□□ 1.99
YIF1A-209ENST00000494836 CUL7Q14999 1698 aa27.47■■□□□ 1.99
YIF1A-209ENST00000494836 CLASP1Q7Z460 1538 aa27.45■■□□□ 1.98
YIF1A-209ENST00000494836 RUSC2Q8N2Y8 1516 aa27.4■■□□□ 1.98
YIF1A-209ENST00000494836 NUP160Q12769 1436 aa27.39■■□□□ 1.97
YIF1A-209ENST00000494836 CEP170Q5SW79 1584 aa27.38■■□□□ 1.97
YIF1A-209ENST00000494836 CHIC1Q5VXU3 224 aa27.35■■□□□ 1.97
YIF1A-209ENST00000494836 ARHGEF11O15085 1522 aa27.35■■□□□ 1.97
YIF1A-209ENST00000494836 CARMIL1Q5VZK9 1371 aa27.35■■□□□ 1.97
YIF1A-209ENST00000494836 RIMBP3CA6NJZ7 1639 aa27.33■■□□□ 1.97
YIF1A-209ENST00000494836 RIMBP3BA6NNM3 1639 aa27.33■■□□□ 1.97
YIF1A-209ENST00000494836 RIMBP3Q9UFD9 1639 aa27.33■■□□□ 1.97
YIF1A-209ENST00000494836 RAPGEF2Q9Y4G8 1499 aa27.21■■□□□ 1.95
YIF1A-209ENST00000494836 EEA1Q15075 1411 aa27.2■■□□□ 1.94
YIF1A-209ENST00000494836 SHROOM2Q13796 1616 aa27.18■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 182 ms