RNA–Protein interactions for RNA: ENST00000494467.1

ABCA1-204, Transcript of ATP binding cassette subfamily A member 1, humanhuman

TSL 3

Gene ABCA1, Length 807 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1-204ENST00000494467 NISCHQ9Y2I1 1504 aa21.86■■□□□ 1.09
ABCA1-204ENST00000494467 CCDC180Q9P1Z9 1646 aa19.35■□□□□ 0.69
ABCA1-204ENST00000494467 ZCCHC6Q5VYS8 1495 aaKnown RBP18.32■□□□□ 0.52
ABCA1-204ENST00000494467 ABCC9O60706 1549 aa18.24■□□□□ 0.51
ABCA1-204ENST00000494467 DCAF1Q9Y4B6 1507 aa18.23■□□□□ 0.51
ABCA1-204ENST00000494467 MYO15BQ96JP2 1530 aa18.18■□□□□ 0.5
ABCA1-204ENST00000494467 NACADO15069 1562 aa18.03■□□□□ 0.48
ABCA1-204ENST00000494467 RB1CC1Q8TDY2 1594 aa17.9■□□□□ 0.46
ABCA1-204ENST00000494467 DCAF8L2P0C7V8 631 aa17.77■□□□□ 0.44
ABCA1-204ENST00000494467 UNC13AQ9UPW8 1703 aa17.57■□□□□ 0.4
ABCA1-204ENST00000494467 SCRIBQ14160 1630 aa17.48■□□□□ 0.39
ABCA1-204ENST00000494467 BICRAQ9NZM4 1560 aa17.36■□□□□ 0.37
ABCA1-204ENST00000494467 SHROOM4Q9ULL8 1493 aa17.33■□□□□ 0.37
ABCA1-204ENST00000494467 PABPN1Q86U42 306 aaKnown RBP eCLIP17.05■□□□□ 0.32
ABCA1-204ENST00000494467 BAZ1AQ9NRL2 1556 aaPredicted RBP16.92■□□□□ 0.3
ABCA1-204ENST00000494467 CECR2Q9BXF3 1484 aa16.9■□□□□ 0.3
ABCA1-204ENST00000494467 SMARCA4P51532 1647 aa16.87■□□□□ 0.29
ABCA1-204ENST00000494467 EIF4G1Q04637 1599 aaKnown RBP16.83■□□□□ 0.28
ABCA1-204ENST00000494467 MROH2BQ7Z745 1585 aa16.81■□□□□ 0.28
ABCA1-204ENST00000494467 PEG3Q9GZU2 1588 aa16.8■□□□□ 0.28
ABCA1-204ENST00000494467 RSF1Q96T23 1441 aaPredicted RBP16.79■□□□□ 0.28
ABCA1-204ENST00000494467 SMARCA2P51531 1590 aa16.68■□□□□ 0.26
ABCA1-204ENST00000494467 WIZO95785 1651 aa16.65■□□□□ 0.26
ABCA1-204ENST00000494467 ATAD2BQ9ULI0 1458 aa16.64■□□□□ 0.25
ABCA1-204ENST00000494467 CC2D2AQ9P2K1 1620 aa16.63■□□□□ 0.25
ABCA1-204ENST00000494467 NCAPD3P42695 1498 aa16.61■□□□□ 0.25
ABCA1-204ENST00000494467 HMGXB3Q12766 1538 aa16.6■□□□□ 0.25
ABCA1-204ENST00000494467 TOP2AP11388 1531 aaKnown RBP16.54■□□□□ 0.24
ABCA1-204ENST00000494467 BAZ1BQ9UIG0 1483 aaKnown RBP16.48■□□□□ 0.23
ABCA1-204ENST00000494467 SUPT5HO00267 1087 aaKnown RBP16.47■□□□□ 0.23
ABCA1-204ENST00000494467 DNAJC5BQ9UF47 199 aa16.35■□□□□ 0.21
ABCA1-204ENST00000494467 CCDC88BA6NC98 1476 aa16.29■□□□□ 0.2
ABCA1-204ENST00000494467 PRDM2Q13029 1718 aa16.16■□□□□ 0.18
ABCA1-204ENST00000494467 CFTRP13569 1480 aa16.14■□□□□ 0.17
ABCA1-204ENST00000494467 LAMC3Q9Y6N6 1575 aa16.11■□□□□ 0.17
ABCA1-204ENST00000494467 CADPSQ9ULU8 1353 aa16.1■□□□□ 0.17
ABCA1-204ENST00000494467 NESP48681 1621 aa15.95■□□□□ 0.14
ABCA1-204ENST00000494467 PDS5BQ9NTI5 1447 aa15.92■□□□□ 0.14
ABCA1-204ENST00000494467 FANCD2Q9BXW9 1451 aa15.88■□□□□ 0.13
ABCA1-204ENST00000494467 KIF21AQ7Z4S6 1674 aa15.86■□□□□ 0.13
ABCA1-204ENST00000494467 CEP164Q9UPV0 1460 aa15.83■□□□□ 0.12
ABCA1-204ENST00000494467 BIVM-ERCC5R4GMW8 1640 aa15.81■□□□□ 0.12
ABCA1-204ENST00000494467 ABCC8Q09428 1581 aa15.8■□□□□ 0.12
ABCA1-204ENST00000494467 TOP2BQ02880 1626 aa15.79■□□□□ 0.12
ABCA1-204ENST00000494467 WRNQ14191 1432 aaPredicted RBP eCLIP15.78■□□□□ 0.12
ABCA1-204ENST00000494467 DNMBPQ6XZF7 1577 aa15.76■□□□□ 0.11
ABCA1-204ENST00000494467 CHIC1Q5VXU3 224 aa15.76■□□□□ 0.11
ABCA1-204ENST00000494467 CUX1P39880 1505 aa15.75■□□□□ 0.11
ABCA1-204ENST00000494467 SYNJ1O43426 1573 aa15.75■□□□□ 0.11
ABCA1-204ENST00000494467 MRC2Q9UBG0 1479 aa15.73■□□□□ 0.11
ABCA1-204ENST00000494467 THOC2Q8NI27 1593 aaKnown RBP15.73■□□□□ 0.11
ABCA1-204ENST00000494467 WDR62O43379 1518 aa15.72■□□□□ 0.11
ABCA1-204ENST00000494467 URB2Q14146 1524 aaKnown RBP15.71■□□□□ 0.11
ABCA1-204ENST00000494467 TOPBP1Q92547 1522 aa15.7■□□□□ 0.1
ABCA1-204ENST00000494467 ERCC6Q03468 1493 aa15.68■□□□□ 0.1
ABCA1-204ENST00000494467 TRIM41Q8WV44 630 aa15.61■□□□□ 0.09
ABCA1-204ENST00000494467 POLA1P09884 1462 aaPredicted RBP15.59■□□□□ 0.09
ABCA1-204ENST00000494467 FGD5Q6ZNL6 1462 aa15.59■□□□□ 0.09
ABCA1-204ENST00000494467 WDR97A6NE52 1622 aa15.57■□□□□ 0.08
ABCA1-204ENST00000494467 TARBP1Q13395 1621 aaKnown RBP15.56■□□□□ 0.08
ABCA1-204ENST00000494467 ABCA10Q8WWZ4 1543 aa15.54■□□□□ 0.08
ABCA1-204ENST00000494467 CUX2O14529 1486 aa15.54■□□□□ 0.08
ABCA1-204ENST00000494467 IFT140Q96RY7 1462 aa15.51■□□□□ 0.07
ABCA1-204ENST00000494467 EEA1Q15075 1411 aa15.51■□□□□ 0.07
ABCA1-204ENST00000494467 SOGA1O94964 1423 aa15.5■□□□□ 0.07
ABCA1-204ENST00000494467 ABCA5Q8WWZ7 1642 aa15.46■□□□□ 0.06
ABCA1-204ENST00000494467 RAD54L2Q9Y4B4 1467 aa15.45■□□□□ 0.06
ABCA1-204ENST00000494467 KIF27Q86VH2 1401 aa15.43■□□□□ 0.06
ABCA1-204ENST00000494467 ERICH3Q5RHP9 1530 aa15.38■□□□□ 0.05
ABCA1-204ENST00000494467 RUSC2Q8N2Y8 1516 aa15.38■□□□□ 0.05
ABCA1-204ENST00000494467 GAPVD1Q14C86 1478 aa15.36■□□□□ 0.05
ABCA1-204ENST00000494467 PBRM1Q86U86 1689 aa15.35■□□□□ 0.05
ABCA1-204ENST00000494467 EIF4G3O43432 1585 aaKnown RBP15.35■□□□□ 0.05
ABCA1-204ENST00000494467 ZNF608Q9ULD9 1512 aaPredicted RBP15.33■□□□□ 0.05
ABCA1-204ENST00000494467 CUL7Q14999 1698 aa15.33■□□□□ 0.04
ABCA1-204ENST00000494467 IGF1RP08069 1367 aa15.32■□□□□ 0.04
ABCA1-204ENST00000494467 KIF21BO75037 1637 aa15.32■□□□□ 0.04
ABCA1-204ENST00000494467 DNAJC5Q9H3Z4 198 aa15.31■□□□□ 0.04
ABCA1-204ENST00000494467 GRIN2BQ13224 1484 aa15.31■□□□□ 0.04
ABCA1-204ENST00000494467 TDRD9Q8NDG6 1382 aaKnown RBP15.3■□□□□ 0.04
ABCA1-204ENST00000494467 CSRNP3Q8WYN3 585 aa15.3■□□□□ 0.04
ABCA1-204ENST00000494467 PRXQ9BXM0 1461 aa15.3■□□□□ 0.04
ABCA1-204ENST00000494467 AQRO60306 1485 aaKnown RBP eCLIP15.28■□□□□ 0.04
ABCA1-204ENST00000494467 MAGI1Q96QZ7 1491 aaPredicted RBP15.26■□□□□ 0.03
ABCA1-204ENST00000494467 ADAMTS12P58397 1594 aa15.24■□□□□ 0.03
ABCA1-204ENST00000494467 FHAD1B1AJZ9 1412 aa15.21■□□□□ 0.03
ABCA1-204ENST00000494467 CARMIL1Q5VZK9 1371 aa15.21■□□□□ 0.02
ABCA1-204ENST00000494467 RAPGEF2Q9Y4G8 1499 aa15.2■□□□□ 0.02
ABCA1-204ENST00000494467 GOLGA3Q08378 1498 aa15.18■□□□□ 0.02
ABCA1-204ENST00000494467 SNAPC4Q5SXM2 1469 aa15.18■□□□□ 0.02
ABCA1-204ENST00000494467 SYNJ2O15056 1496 aa15.16■□□□□ 0.02
ABCA1-204ENST00000494467 FAM9AQ8IZU1 332 aaPredicted RBP15.15■□□□□ 0.02
ABCA1-204ENST00000494467 GRIN2AQ12879 1464 aa15.11■□□□□ 0.01
ABCA1-204ENST00000494467 CTTNBP2Q8WZ74 1663 aa15.1■□□□□ 0.01
ABCA1-204ENST00000494467 TNIKQ9UKE5 1360 aa15.1■□□□□ 0.01
ABCA1-204ENST00000494467 CHD1O14646 1710 aa15.09■□□□□ 0.01
ABCA1-204ENST00000494467 NUP160Q12769 1436 aa15.07■□□□□ 0
ABCA1-204ENST00000494467 CEP170Q5SW79 1584 aa15.02□□□□□ -0.01
ABCA1-204ENST00000494467 KIAA0586Q9BVV6 1533 aa15.02□□□□□ -0.01
ABCA1-204ENST00000494467 LOC105371045A0A1W2PR82 267 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms