RNA–Protein interactions for RNA: ENST00000494395.1

ITGB1-217, Transcript of integrin subunit beta 1, humanhuman

TSL 3

Gene ITGB1, Length 562 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-217ENST00000494395 AEBP2Q6ZN18 517 aaPredicted RBP22.93■■□□□ 1.26
ITGB1-217ENST00000494395 CHIC1Q5VXU3 224 aa22.81■■□□□ 1.24
ITGB1-217ENST00000494395 NISCHQ9Y2I1 1504 aa21.5■■□□□ 1.03
ITGB1-217ENST00000494395 PHF23Q9BUL5 403 aaPredicted RBP20.13■□□□□ 0.81
ITGB1-217ENST00000494395 SENP3Q9H4L4 574 aaPredicted RBP19.35■□□□□ 0.69
ITGB1-217ENST00000494395 CCDC180Q9P1Z9 1646 aa19.16■□□□□ 0.66
ITGB1-217ENST00000494395 PLPPR3Q6T4P5 718 aa18.71■□□□□ 0.59
ITGB1-217ENST00000494395 ABCC9O60706 1549 aa18.65■□□□□ 0.58
ITGB1-217ENST00000494395 NACADO15069 1562 aa17.97■□□□□ 0.47
ITGB1-217ENST00000494395 RB1CC1Q8TDY2 1594 aa17.97■□□□□ 0.47
ITGB1-217ENST00000494395 ZCCHC6Q5VYS8 1495 aaKnown RBP17.94■□□□□ 0.46
ITGB1-217ENST00000494395 FOXD1Q16676 465 aa17.93■□□□□ 0.46
ITGB1-217ENST00000494395 MYO15BQ96JP2 1530 aa17.91■□□□□ 0.46
ITGB1-217ENST00000494395 DCAF1Q9Y4B6 1507 aa17.83■□□□□ 0.45
ITGB1-217ENST00000494395 DCAF8L2P0C7V8 631 aa17.78■□□□□ 0.44
ITGB1-217ENST00000494395 UNC13AQ9UPW8 1703 aa17.66■□□□□ 0.42
ITGB1-217ENST00000494395 ADRA2BP18089 450 aa17.62■□□□□ 0.41
ITGB1-217ENST00000494395 PPP6R1Q9UPN7 881 aa17.61■□□□□ 0.41
ITGB1-217ENST00000494395 BICRAQ9NZM4 1560 aa17.5■□□□□ 0.39
ITGB1-217ENST00000494395 SCRIBQ14160 1630 aa17.43■□□□□ 0.38
ITGB1-217ENST00000494395 PABPN1Q86U42 306 aaKnown RBP eCLIP17.38■□□□□ 0.37
ITGB1-217ENST00000494395 SHROOM4Q9ULL8 1493 aa17.29■□□□□ 0.36
ITGB1-217ENST00000494395 DNAJC5BQ9UF47 199 aa17.14■□□□□ 0.33
ITGB1-217ENST00000494395 PIAS4Q8N2W9 510 aaPredicted RBP17.02■□□□□ 0.32
ITGB1-217ENST00000494395 EIF4G1Q04637 1599 aaKnown RBP16.99■□□□□ 0.31
ITGB1-217ENST00000494395 CC2D2AQ9P2K1 1620 aa16.92■□□□□ 0.3
ITGB1-217ENST00000494395 CECR2Q9BXF3 1484 aa16.76■□□□□ 0.27
ITGB1-217ENST00000494395 SMARCA4P51532 1647 aa16.7■□□□□ 0.26
ITGB1-217ENST00000494395 KCNA4P22459 653 aa16.7■□□□□ 0.26
ITGB1-217ENST00000494395 BAZ1AQ9NRL2 1556 aaPredicted RBP16.66■□□□□ 0.26
ITGB1-217ENST00000494395 ATAD2BQ9ULI0 1458 aa16.59■□□□□ 0.25
ITGB1-217ENST00000494395 NCAPD3P42695 1498 aa16.58■□□□□ 0.24
ITGB1-217ENST00000494395 MROH2BQ7Z745 1585 aa16.58■□□□□ 0.24
ITGB1-217ENST00000494395 PEG3Q9GZU2 1588 aa16.57■□□□□ 0.24
ITGB1-217ENST00000494395 SMARCA2P51531 1590 aa16.56■□□□□ 0.24
ITGB1-217ENST00000494395 PPP4R3CPQ6ZMV5 832 aa16.56■□□□□ 0.24
ITGB1-217ENST00000494395 HMGXB3Q12766 1538 aa16.53■□□□□ 0.24
ITGB1-217ENST00000494395 BAZ1BQ9UIG0 1483 aaKnown RBP16.42■□□□□ 0.22
ITGB1-217ENST00000494395 WIZO95785 1651 aa16.4■□□□□ 0.22
ITGB1-217ENST00000494395 RSF1Q96T23 1441 aaPredicted RBP16.37■□□□□ 0.21
ITGB1-217ENST00000494395 MSH5O43196 834 aa16.33■□□□□ 0.2
ITGB1-217ENST00000494395 NCBP3Q53F19 620 aaKnown RBP16.23■□□□□ 0.19
ITGB1-217ENST00000494395 TOP2AP11388 1531 aaKnown RBP16.23■□□□□ 0.19
ITGB1-217ENST00000494395 NESP48681 1621 aa16.18■□□□□ 0.18
ITGB1-217ENST00000494395 LAMC3Q9Y6N6 1575 aa16.15■□□□□ 0.18
ITGB1-217ENST00000494395 SCAF1Q9H7N4 1312 aaKnown RBP16.08■□□□□ 0.16
ITGB1-217ENST00000494395 CADPSQ9ULU8 1353 aa16.06■□□□□ 0.16
ITGB1-217ENST00000494395 EHMT2Q96KQ7 1210 aa16.05■□□□□ 0.16
ITGB1-217ENST00000494395 ERCC6Q03468 1493 aa16.04■□□□□ 0.16
ITGB1-217ENST00000494395 NPM3O75607 178 aaKnown RBP16.02■□□□□ 0.16
ITGB1-217ENST00000494395 KIF21AQ7Z4S6 1674 aa16.02■□□□□ 0.15
ITGB1-217ENST00000494395 CCDC88BA6NC98 1476 aa16.01■□□□□ 0.15
ITGB1-217ENST00000494395 CFTRP13569 1480 aa16.01■□□□□ 0.15
ITGB1-217ENST00000494395 CNKSR2Q8WXI2 1034 aa15.99■□□□□ 0.15
ITGB1-217ENST00000494395 THOC2Q8NI27 1593 aaKnown RBP15.98■□□□□ 0.15
ITGB1-217ENST00000494395 PDS5BQ9NTI5 1447 aa15.98■□□□□ 0.15
ITGB1-217ENST00000494395 SLC4A1APQ9BWU0 796 aaKnown RBP15.97■□□□□ 0.15
ITGB1-217ENST00000494395 PRDM2Q13029 1718 aa15.94■□□□□ 0.14
ITGB1-217ENST00000494395 CUX2O14529 1486 aa15.94■□□□□ 0.14
ITGB1-217ENST00000494395 FANCD2Q9BXW9 1451 aa15.89■□□□□ 0.13
ITGB1-217ENST00000494395 MAPK8IP2Q13387 824 aaPredicted RBP15.87■□□□□ 0.13
ITGB1-217ENST00000494395 CEP164Q9UPV0 1460 aa15.86■□□□□ 0.13
ITGB1-217ENST00000494395 MRC2Q9UBG0 1479 aa15.85■□□□□ 0.13
ITGB1-217ENST00000494395 SUPT5HO00267 1087 aaKnown RBP15.84■□□□□ 0.13
ITGB1-217ENST00000494395 WDR62O43379 1518 aa15.84■□□□□ 0.13
ITGB1-217ENST00000494395 URB2Q14146 1524 aaKnown RBP15.77■□□□□ 0.11
ITGB1-217ENST00000494395 TOPBP1Q92547 1522 aa15.66■□□□□ 0.1
ITGB1-217ENST00000494395 CSRNP3Q8WYN3 585 aa15.65■□□□□ 0.1
ITGB1-217ENST00000494395 DNMBPQ6XZF7 1577 aa15.65■□□□□ 0.1
ITGB1-217ENST00000494395 ABCC8Q09428 1581 aa15.62■□□□□ 0.09
ITGB1-217ENST00000494395 RNF216Q9NWF9 866 aaPredicted RBP15.56■□□□□ 0.08
ITGB1-217ENST00000494395 CUX1P39880 1505 aa15.56■□□□□ 0.08
ITGB1-217ENST00000494395 IFT140Q96RY7 1462 aa15.53■□□□□ 0.08
ITGB1-217ENST00000494395 POLA1P09884 1462 aaPredicted RBP15.52■□□□□ 0.08
ITGB1-217ENST00000494395 DMRT2Q9Y5R5 561 aa15.52■□□□□ 0.08
ITGB1-217ENST00000494395 TARBP1Q13395 1621 aaKnown RBP15.52■□□□□ 0.08
ITGB1-217ENST00000494395 ZNF608Q9ULD9 1512 aaPredicted RBP15.48■□□□□ 0.07
ITGB1-217ENST00000494395 FGD5Q6ZNL6 1462 aa15.47■□□□□ 0.07
ITGB1-217ENST00000494395 BIVM-ERCC5R4GMW8 1640 aa15.44■□□□□ 0.06
ITGB1-217ENST00000494395 RAD54L2Q9Y4B4 1467 aa15.44■□□□□ 0.06
ITGB1-217ENST00000494395 EIF4G3O43432 1585 aaKnown RBP15.44■□□□□ 0.06
ITGB1-217ENST00000494395 WDR97A6NE52 1622 aa15.43■□□□□ 0.06
ITGB1-217ENST00000494395 TOP2BQ02880 1626 aa15.43■□□□□ 0.06
ITGB1-217ENST00000494395 SYNJ1O43426 1573 aa15.42■□□□□ 0.06
ITGB1-217ENST00000494395 SOGA1O94964 1423 aa15.42■□□□□ 0.06
ITGB1-217ENST00000494395 WRNQ14191 1432 aaPredicted RBP eCLIP15.42■□□□□ 0.06
ITGB1-217ENST00000494395 DNAJC5Q9H3Z4 198 aa15.4■□□□□ 0.06
ITGB1-217ENST00000494395 ZBTB22O15209 634 aa15.38■□□□□ 0.05
ITGB1-217ENST00000494395 HOXD11P31277 338 aaPredicted RBP15.38■□□□□ 0.05
ITGB1-217ENST00000494395 AQRO60306 1485 aaKnown RBP eCLIP15.36■□□□□ 0.058e-7■■■□□ 16.1
ITGB1-217ENST00000494395 ABCA10Q8WWZ4 1543 aa15.35■□□□□ 0.05
ITGB1-217ENST00000494395 TDRD9Q8NDG6 1382 aaKnown RBP15.32■□□□□ 0.04
ITGB1-217ENST00000494395 ABCA5Q8WWZ7 1642 aa15.31■□□□□ 0.04
ITGB1-217ENST00000494395 PBRM1Q86U86 1689 aa15.28■□□□□ 0.04
ITGB1-217ENST00000494395 GRIN2BQ13224 1484 aa15.26■□□□□ 0.03
ITGB1-217ENST00000494395 GAPVD1Q14C86 1478 aa15.26■□□□□ 0.03
ITGB1-217ENST00000494395 CHD1O14646 1710 aa15.26■□□□□ 0.03
ITGB1-217ENST00000494395 SNAPC4Q5SXM2 1469 aa15.24■□□□□ 0.03
ITGB1-217ENST00000494395 MAGI1Q96QZ7 1491 aaPredicted RBP15.23■□□□□ 0.03
ITGB1-217ENST00000494395 FOXD4L1Q9NU39 408 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 143.5 ms