RNA–Protein interactions for RNA: ENST00000494014.1

EPHA3-203, Transcript of EPH receptor A3, humanhuman

TSL 1 (best) BASIC

Gene EPHA3, Length 3,085 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA3-203ENST00000494014 NISCHQ9Y2I1 1504 aa15.58■□□□□ 0.08
EPHA3-203ENST00000494014 CCDC180Q9P1Z9 1646 aa14.22□□□□□ -0.13
EPHA3-203ENST00000494014 ABCC9O60706 1549 aa13.7□□□□□ -0.22
EPHA3-203ENST00000494014 RB1CC1Q8TDY2 1594 aa13.37□□□□□ -0.27
EPHA3-203ENST00000494014 MYO15BQ96JP2 1530 aa13.35□□□□□ -0.27
EPHA3-203ENST00000494014 NACADO15069 1562 aa13.34□□□□□ -0.27
EPHA3-203ENST00000494014 DCAF1Q9Y4B6 1507 aa13.12□□□□□ -0.31
EPHA3-203ENST00000494014 SHROOM4Q9ULL8 1493 aa13.09□□□□□ -0.31
EPHA3-203ENST00000494014 UNC13AQ9UPW8 1703 aa13.08□□□□□ -0.32
EPHA3-203ENST00000494014 ZCCHC6Q5VYS8 1495 aaKnown RBP12.96□□□□□ -0.33
EPHA3-203ENST00000494014 BICRAQ9NZM4 1560 aa12.96□□□□□ -0.33
EPHA3-203ENST00000494014 DNAJC5BQ9UF47 199 aa12.78□□□□□ -0.36
EPHA3-203ENST00000494014 EIF4G1Q04637 1599 aaKnown RBP12.59□□□□□ -0.39
EPHA3-203ENST00000494014 PABPN1Q86U42 306 aaKnown RBP eCLIP12.58□□□□□ -0.39
EPHA3-203ENST00000494014 CC2D2AQ9P2K1 1620 aa12.58□□□□□ -0.4
EPHA3-203ENST00000494014 SCRIBQ14160 1630 aa12.57□□□□□ -0.4
EPHA3-203ENST00000494014 DCAF8L2P0C7V8 631 aa12.48□□□□□ -0.41
EPHA3-203ENST00000494014 CECR2Q9BXF3 1484 aa12.47□□□□□ -0.41
EPHA3-203ENST00000494014 NCAPD3P42695 1498 aa12.25□□□□□ -0.45
EPHA3-203ENST00000494014 HMGXB3Q12766 1538 aa12.25□□□□□ -0.45
EPHA3-203ENST00000494014 PEG3Q9GZU2 1588 aa12.23□□□□□ -0.45
EPHA3-203ENST00000494014 SMARCA2P51531 1590 aa12.19□□□□□ -0.46
EPHA3-203ENST00000494014 SMARCA4P51532 1647 aa12.18□□□□□ -0.46
EPHA3-203ENST00000494014 CUX2O14529 1486 aa12.15□□□□□ -0.46
EPHA3-203ENST00000494014 BAZ1AQ9NRL2 1556 aaPredicted RBP12.13□□□□□ -0.47
EPHA3-203ENST00000494014 ATAD2BQ9ULI0 1458 aa12.13□□□□□ -0.47
EPHA3-203ENST00000494014 LAMC3Q9Y6N6 1575 aa12.02□□□□□ -0.49
EPHA3-203ENST00000494014 PELP1Q8IZL8 1130 aaKnown RBP11.99□□□□□ -0.49
EPHA3-203ENST00000494014 THOC2Q8NI27 1593 aaKnown RBP11.96□□□□□ -0.49
EPHA3-203ENST00000494014 BAZ1BQ9UIG0 1483 aaKnown RBP11.96□□□□□ -0.5
EPHA3-203ENST00000494014 HRCP23327 699 aa11.9□□□□□ -0.5
EPHA3-203ENST00000494014 MROH2BQ7Z745 1585 aa11.89□□□□□ -0.51
EPHA3-203ENST00000494014 DNAJC5Q9H3Z4 198 aa11.89□□□□□ -0.51
EPHA3-203ENST00000494014 ERCC6Q03468 1493 aa11.87□□□□□ -0.51
EPHA3-203ENST00000494014 KIF21AQ7Z4S6 1674 aa11.83□□□□□ -0.52
EPHA3-203ENST00000494014 PDS5BQ9NTI5 1447 aa11.81□□□□□ -0.52
EPHA3-203ENST00000494014 WDR62O43379 1518 aa11.81□□□□□ -0.52
EPHA3-203ENST00000494014 PRDM2Q13029 1718 aa11.8□□□□□ -0.52
EPHA3-203ENST00000494014 NESP48681 1621 aa11.79□□□□□ -0.52
EPHA3-203ENST00000494014 CADPSQ9ULU8 1353 aa11.76□□□□□ -0.53
EPHA3-203ENST00000494014 TOP2AP11388 1531 aaKnown RBP11.75□□□□□ -0.53
EPHA3-203ENST00000494014 WIZO95785 1651 aa11.74□□□□□ -0.53
EPHA3-203ENST00000494014 MRC2Q9UBG0 1479 aa11.74□□□□□ -0.53
EPHA3-203ENST00000494014 CFTRP13569 1480 aa11.71□□□□□ -0.54
EPHA3-203ENST00000494014 MYT1Q01538 1121 aa11.66□□□□□ -0.54
EPHA3-203ENST00000494014 RSF1Q96T23 1441 aaPredicted RBP11.65□□□□□ -0.54
EPHA3-203ENST00000494014 CEP164Q9UPV0 1460 aa11.64□□□□□ -0.55
EPHA3-203ENST00000494014 FANCD2Q9BXW9 1451 aa11.61□□□□□ -0.55
EPHA3-203ENST00000494014 WDR97A6NE52 1622 aa11.55□□□□□ -0.56
EPHA3-203ENST00000494014 ABCC8Q09428 1581 aa11.54□□□□□ -0.56
EPHA3-203ENST00000494014 URB2Q14146 1524 aaKnown RBP11.53□□□□□ -0.56
EPHA3-203ENST00000494014 IFT140Q96RY7 1462 aa11.49□□□□□ -0.57
EPHA3-203ENST00000494014 DNMBPQ6XZF7 1577 aa11.47□□□□□ -0.57
EPHA3-203ENST00000494014 CCDC88BA6NC98 1476 aa11.47□□□□□ -0.57
EPHA3-203ENST00000494014 PPARGC1BQ86YN6 1023 aaKnown RBP11.45□□□□□ -0.58
EPHA3-203ENST00000494014 PCGF6Q9BYE7 350 aa11.43□□□□□ -0.58
EPHA3-203ENST00000494014 TOPBP1Q92547 1522 aa11.42□□□□□ -0.58
EPHA3-203ENST00000494014 TARBP1Q13395 1621 aaKnown RBP11.42□□□□□ -0.58
EPHA3-203ENST00000494014 EIF4G3O43432 1585 aaKnown RBP11.38□□□□□ -0.59
EPHA3-203ENST00000494014 RIMBP3CA6NJZ7 1639 aa11.31□□□□□ -0.6
EPHA3-203ENST00000494014 RIMBP3BA6NNM3 1639 aa11.31□□□□□ -0.6
EPHA3-203ENST00000494014 RIMBP3Q9UFD9 1639 aa11.31□□□□□ -0.6
EPHA3-203ENST00000494014 SCAF1Q9H7N4 1312 aaKnown RBP11.3□□□□□ -0.6
EPHA3-203ENST00000494014 OSCARQ8IYS5 282 aa11.29□□□□□ -0.6
EPHA3-203ENST00000494014 CHD1O14646 1710 aa11.28□□□□□ -0.6
EPHA3-203ENST00000494014 ZNF608Q9ULD9 1512 aaPredicted RBP11.28□□□□□ -0.6
EPHA3-203ENST00000494014 POLA1P09884 1462 aaPredicted RBP11.28□□□□□ -0.6
EPHA3-203ENST00000494014 CLASP1Q7Z460 1538 aa11.26□□□□□ -0.61
EPHA3-203ENST00000494014 MAGI1Q96QZ7 1491 aaPredicted RBP11.25□□□□□ -0.61
EPHA3-203ENST00000494014 ZEB1P37275 1124 aaPredicted RBP11.24□□□□□ -0.61
EPHA3-203ENST00000494014 ARHGEF11O15085 1522 aa11.24□□□□□ -0.61
EPHA3-203ENST00000494014 CHIC1Q5VXU3 224 aa11.22□□□□□ -0.61
EPHA3-203ENST00000494014 CUX1P39880 1505 aa11.21□□□□□ -0.61
EPHA3-203ENST00000494014 ABCA5Q8WWZ7 1642 aa11.21□□□□□ -0.61
EPHA3-203ENST00000494014 SUPT5HO00267 1087 aaKnown RBP11.21□□□□□ -0.62
EPHA3-203ENST00000494014 PBRM1Q86U86 1689 aa11.21□□□□□ -0.62
EPHA3-203ENST00000494014 BIVM-ERCC5R4GMW8 1640 aa11.2□□□□□ -0.62
EPHA3-203ENST00000494014 SYNJ1O43426 1573 aa11.19□□□□□ -0.62
EPHA3-203ENST00000494014 ABCA10Q8WWZ4 1543 aa11.18□□□□□ -0.62
EPHA3-203ENST00000494014 FGD5Q6ZNL6 1462 aa11.18□□□□□ -0.62
EPHA3-203ENST00000494014 GRIN2BQ13224 1484 aa11.17□□□□□ -0.62
EPHA3-203ENST00000494014 SOGA1O94964 1423 aa11.16□□□□□ -0.62
EPHA3-203ENST00000494014 TRIM26Q12899 539 aaPredicted RBP11.15□□□□□ -0.62
EPHA3-203ENST00000494014 SYNJ2O15056 1496 aa11.15□□□□□ -0.63
EPHA3-203ENST00000494014 TOP2BQ02880 1626 aa11.13□□□□□ -0.63
EPHA3-203ENST00000494014 AQRO60306 1485 aaKnown RBP eCLIP11.13□□□□□ -0.63
EPHA3-203ENST00000494014 SNAPC4Q5SXM2 1469 aa11.12□□□□□ -0.63
EPHA3-203ENST00000494014 ARAP1Q96P48 1450 aa11.12□□□□□ -0.63
EPHA3-203ENST00000494014 SHROOM2Q13796 1616 aa11.11□□□□□ -0.63
EPHA3-203ENST00000494014 RAD54L2Q9Y4B4 1467 aa11.11□□□□□ -0.63
EPHA3-203ENST00000494014 ADAMTS12P58397 1594 aa11.09□□□□□ -0.63
EPHA3-203ENST00000494014 ERICH3Q5RHP9 1530 aa11.08□□□□□ -0.64
EPHA3-203ENST00000494014 GAPVD1Q14C86 1478 aa11.07□□□□□ -0.64
EPHA3-203ENST00000494014 NUP160Q12769 1436 aa11.05□□□□□ -0.64
EPHA3-203ENST00000494014 TTBK1Q5TCY1 1321 aaPredicted RBP11.04□□□□□ -0.64
EPHA3-203ENST00000494014 ACIN1Q9UKV3 1341 aaKnown RBP11.04□□□□□ -0.64
EPHA3-203ENST00000494014 TRIM41Q8WV44 630 aa11.02□□□□□ -0.65
EPHA3-203ENST00000494014 WRNQ14191 1432 aaPredicted RBP eCLIP11.02□□□□□ -0.65
EPHA3-203ENST00000494014 GRIN2AQ12879 1464 aa11.01□□□□□ -0.65
EPHA3-203ENST00000494014 TDRD9Q8NDG6 1382 aaKnown RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms