RNA–Protein interactions for RNA: ENST00000493957.5

UBA3-211, Transcript of ubiquitin like modifier activating enzyme 3, humanhuman

TSL 3

Gene UBA3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBA3-211ENST00000493957 AEBP2Q6ZN18 517 aaPredicted RBP30.66■■■□□ 2.5
UBA3-211ENST00000493957 CHIC1Q5VXU3 224 aa28.62■■■□□ 2.17
UBA3-211ENST00000493957 NISCHQ9Y2I1 1504 aa28.41■■■□□ 2.14
UBA3-211ENST00000493957 SENP3Q9H4L4 574 aaPredicted RBP26.25■■□□□ 1.79
UBA3-211ENST00000493957 PHF23Q9BUL5 403 aaPredicted RBP25.8■■□□□ 1.72
UBA3-211ENST00000493957 CCDC180Q9P1Z9 1646 aa25.28■■□□□ 1.64
UBA3-211ENST00000493957 ABCC9O60706 1549 aa24.68■■□□□ 1.54
UBA3-211ENST00000493957 FOXD1Q16676 465 aa24.58■■□□□ 1.53
UBA3-211ENST00000493957 POTEDQ86YR6 584 aa23.98■■□□□ 1.43
UBA3-211ENST00000493957 RB1CC1Q8TDY2 1594 aa23.72■■□□□ 1.39
UBA3-211ENST00000493957 ZCCHC6Q5VYS8 1495 aaKnown RBP23.69■■□□□ 1.38
UBA3-211ENST00000493957 NACADO15069 1562 aa23.69■■□□□ 1.38
UBA3-211ENST00000493957 DCAF8L2P0C7V8 631 aa23.66■■□□□ 1.38
UBA3-211ENST00000493957 MYO15BQ96JP2 1530 aa23.51■■□□□ 1.35
UBA3-211ENST00000493957 DCAF1Q9Y4B6 1507 aa23.46■■□□□ 1.35
UBA3-211ENST00000493957 UNC13AQ9UPW8 1703 aa23.4■■□□□ 1.34
UBA3-211ENST00000493957 MSH5O43196 834 aa23.27■■□□□ 1.32
UBA3-211ENST00000493957 SCRIBQ14160 1630 aa23.12■■□□□ 1.29
UBA3-211ENST00000493957 BICRAQ9NZM4 1560 aa23.09■■□□□ 1.29
UBA3-211ENST00000493957 PABPN1Q86U42 306 aaKnown RBP eCLIP23.04■■□□□ 1.28
UBA3-211ENST00000493957 PIAS4Q8N2W9 510 aaPredicted RBP22.78■■□□□ 1.24
UBA3-211ENST00000493957 SHROOM4Q9ULL8 1493 aa22.67■■□□□ 1.22
UBA3-211ENST00000493957 DNAJC5BQ9UF47 199 aa22.61■■□□□ 1.21
UBA3-211ENST00000493957 EIF4G1Q04637 1599 aaKnown RBP22.42■■□□□ 1.18
UBA3-211ENST00000493957 PPP6R1Q9UPN7 881 aa22.41■■□□□ 1.18
UBA3-211ENST00000493957 CC2D2AQ9P2K1 1620 aa22.35■■□□□ 1.17
UBA3-211ENST00000493957 PLPPR3Q6T4P5 718 aa22.34■■□□□ 1.17
UBA3-211ENST00000493957 ADRA2BP18089 450 aa22.29■■□□□ 1.16
UBA3-211ENST00000493957 CECR2Q9BXF3 1484 aa22.17■■□□□ 1.14
UBA3-211ENST00000493957 SMARCA4P51532 1647 aa22.09■■□□□ 1.13
UBA3-211ENST00000493957 BAZ1AQ9NRL2 1556 aaPredicted RBP21.99■■□□□ 1.11
UBA3-211ENST00000493957 MROH2BQ7Z745 1585 aa21.95■■□□□ 1.1
UBA3-211ENST00000493957 ATAD2BQ9ULI0 1458 aa21.89■■□□□ 1.09
UBA3-211ENST00000493957 SMARCA2P51531 1590 aa21.85■■□□□ 1.09
UBA3-211ENST00000493957 NCAPD3P42695 1498 aa21.83■■□□□ 1.08
UBA3-211ENST00000493957 PEG3Q9GZU2 1588 aa21.82■■□□□ 1.08
UBA3-211ENST00000493957 HMGXB3Q12766 1538 aa21.77■■□□□ 1.08
UBA3-211ENST00000493957 WIZO95785 1651 aa21.77■■□□□ 1.08
UBA3-211ENST00000493957 BAZ1BQ9UIG0 1483 aaKnown RBP21.71■■□□□ 1.07
UBA3-211ENST00000493957 RSF1Q96T23 1441 aaPredicted RBP21.65■■□□□ 1.06
UBA3-211ENST00000493957 TOP2AP11388 1531 aaKnown RBP21.46■■□□□ 1.03
UBA3-211ENST00000493957 NESP48681 1621 aa21.41■■□□□ 1.02
UBA3-211ENST00000493957 LAMC3Q9Y6N6 1575 aa21.29■■□□□ 1
UBA3-211ENST00000493957 KIF21AQ7Z4S6 1674 aa21.23■□□□□ 0.99
UBA3-211ENST00000493957 ERCC6Q03468 1493 aa21.2■□□□□ 0.98
UBA3-211ENST00000493957 CCDC88BA6NC98 1476 aa21.2■□□□□ 0.98
UBA3-211ENST00000493957 CADPSQ9ULU8 1353 aa21.18■□□□□ 0.98
UBA3-211ENST00000493957 SUPT5HO00267 1087 aaKnown RBP21.13■□□□□ 0.97
UBA3-211ENST00000493957 PRDM2Q13029 1718 aa21.12■□□□□ 0.97
UBA3-211ENST00000493957 CFTRP13569 1480 aa21.09■□□□□ 0.97
UBA3-211ENST00000493957 THOC2Q8NI27 1593 aaKnown RBP21.09■□□□□ 0.97
UBA3-211ENST00000493957 PDS5BQ9NTI5 1447 aa21.06■□□□□ 0.96
UBA3-211ENST00000493957 FANCD2Q9BXW9 1451 aa21■□□□□ 0.95
UBA3-211ENST00000493957 CEP164Q9UPV0 1460 aa20.95■□□□□ 0.94
UBA3-211ENST00000493957 CUX2O14529 1486 aa20.94■□□□□ 0.94
UBA3-211ENST00000493957 MRC2Q9UBG0 1479 aa20.92■□□□□ 0.94
UBA3-211ENST00000493957 WDR62O43379 1518 aa20.88■□□□□ 0.93
UBA3-211ENST00000493957 URB2Q14146 1524 aaKnown RBP20.83■□□□□ 0.92
UBA3-211ENST00000493957 DMRT2Q9Y5R5 561 aa20.71■□□□□ 0.91
UBA3-211ENST00000493957 TOPBP1Q92547 1522 aa20.69■□□□□ 0.9
UBA3-211ENST00000493957 MAPK8IP2Q13387 824 aaPredicted RBP20.69■□□□□ 0.9
UBA3-211ENST00000493957 DNMBPQ6XZF7 1577 aa20.67■□□□□ 0.9
UBA3-211ENST00000493957 ABCC8Q09428 1581 aa20.59■□□□□ 0.89
UBA3-211ENST00000493957 CUX1P39880 1505 aa20.58■□□□□ 0.89
UBA3-211ENST00000493957 POLA1P09884 1462 aaPredicted RBP20.5■□□□□ 0.87
UBA3-211ENST00000493957 TARBP1Q13395 1621 aaKnown RBP20.5■□□□□ 0.87
UBA3-211ENST00000493957 IFT140Q96RY7 1462 aa20.49■□□□□ 0.87
UBA3-211ENST00000493957 FGD5Q6ZNL6 1462 aa20.48■□□□□ 0.87
UBA3-211ENST00000493957 ZNF608Q9ULD9 1512 aaPredicted RBP20.48■□□□□ 0.87
UBA3-211ENST00000493957 SYNJ1O43426 1573 aa20.46■□□□□ 0.87
UBA3-211ENST00000493957 RAD54L2Q9Y4B4 1467 aa20.45■□□□□ 0.86
UBA3-211ENST00000493957 BIVM-ERCC5R4GMW8 1640 aa20.44■□□□□ 0.86
UBA3-211ENST00000493957 EIF4G3O43432 1585 aaKnown RBP20.42■□□□□ 0.86
UBA3-211ENST00000493957 CACNB1Q02641 598 aaPredicted RBP20.41■□□□□ 0.86
UBA3-211ENST00000493957 WDR97A6NE52 1622 aa20.41■□□□□ 0.86
UBA3-211ENST00000493957 TOP2BQ02880 1626 aa20.41■□□□□ 0.86
UBA3-211ENST00000493957 WRNQ14191 1432 aaPredicted RBP eCLIP20.39■□□□□ 0.85
UBA3-211ENST00000493957 SOGA1O94964 1423 aa20.37■□□□□ 0.85
UBA3-211ENST00000493957 SCAF1Q9H7N4 1312 aaKnown RBP20.36■□□□□ 0.85
UBA3-211ENST00000493957 AQRO60306 1485 aaKnown RBP eCLIP20.33■□□□□ 0.851e-9■■■■■ 37.7
UBA3-211ENST00000493957 TDRD9Q8NDG6 1382 aaKnown RBP20.29■□□□□ 0.84
UBA3-211ENST00000493957 PBRM1Q86U86 1689 aa20.26■□□□□ 0.83
UBA3-211ENST00000493957 ABCA10Q8WWZ4 1543 aa20.25■□□□□ 0.83
UBA3-211ENST00000493957 ABCA5Q8WWZ7 1642 aa20.24■□□□□ 0.83
UBA3-211ENST00000493957 CHD1O14646 1710 aa20.23■□□□□ 0.83
UBA3-211ENST00000493957 DNAJC5Q9H3Z4 198 aa20.22■□□□□ 0.83
UBA3-211ENST00000493957 GAPVD1Q14C86 1478 aa20.16■□□□□ 0.82
UBA3-211ENST00000493957 SNAPC4Q5SXM2 1469 aa20.16■□□□□ 0.82
UBA3-211ENST00000493957 GRIN2BQ13224 1484 aa20.13■□□□□ 0.81
UBA3-211ENST00000493957 MAGI1Q96QZ7 1491 aaPredicted RBP20.08■□□□□ 0.81
UBA3-211ENST00000493957 ADAMTS12P58397 1594 aa20.04■□□□□ 0.8
UBA3-211ENST00000493957 OSCARQ8IYS5 282 aa20.03■□□□□ 0.8
UBA3-211ENST00000493957 FBLN2P98095 1184 aa20.02■□□□□ 0.8
UBA3-211ENST00000493957 SYNJ2O15056 1496 aa20■□□□□ 0.79
UBA3-211ENST00000493957 ERICH3Q5RHP9 1530 aa20■□□□□ 0.79
UBA3-211ENST00000493957 KIF27Q86VH2 1401 aa19.93■□□□□ 0.78
UBA3-211ENST00000493957 CHMP7Q8WUX9 453 aaPredicted RBP19.93■□□□□ 0.78
UBA3-211ENST00000493957 GRIN2AQ12879 1464 aa19.92■□□□□ 0.78
UBA3-211ENST00000493957 CLASP1Q7Z460 1538 aa19.92■□□□□ 0.78
UBA3-211ENST00000493957 RUSC2Q8N2Y8 1516 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms