RNA–Protein interactions for RNA: ENST00000493940.2

HSPG2-212, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 5

Gene HSPG2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-212ENST00000493940 NISCHQ9Y2I1 1504 aa31.35■■■□□ 2.61
HSPG2-212ENST00000493940 CCDC180Q9P1Z9 1646 aa27.96■■■□□ 2.07
HSPG2-212ENST00000493940 ABCC9O60706 1549 aa27.7■■■□□ 2.02
HSPG2-212ENST00000493940 RB1CC1Q8TDY2 1594 aa26.42■■□□□ 1.82
HSPG2-212ENST00000493940 NACADO15069 1562 aa26.32■■□□□ 1.8
HSPG2-212ENST00000493940 DCAF8L2P0C7V8 631 aa26.31■■□□□ 1.8
HSPG2-212ENST00000493940 DNAJC5BQ9UF47 199 aa26.13■■□□□ 1.77
HSPG2-212ENST00000493940 UNC13AQ9UPW8 1703 aa26.09■■□□□ 1.77
HSPG2-212ENST00000493940 ZCCHC6Q5VYS8 1495 aaKnown RBP26.04■■□□□ 1.76
HSPG2-212ENST00000493940 MYO15BQ96JP2 1530 aa26.03■■□□□ 1.76
HSPG2-212ENST00000493940 PABPN1Q86U42 306 aaKnown RBP eCLIP25.87■■□□□ 1.73
HSPG2-212ENST00000493940 DCAF1Q9Y4B6 1507 aa25.85■■□□□ 1.73
HSPG2-212ENST00000493940 BICRAQ9NZM4 1560 aa25.8■■□□□ 1.72
HSPG2-212ENST00000493940 SCRIBQ14160 1630 aa25.56■■□□□ 1.68
HSPG2-212ENST00000493940 SHROOM4Q9ULL8 1493 aa25.21■■□□□ 1.63
HSPG2-212ENST00000493940 CC2D2AQ9P2K1 1620 aa25.06■■□□□ 1.6
HSPG2-212ENST00000493940 EIF4G1Q04637 1599 aaKnown RBP25.05■■□□□ 1.6
HSPG2-212ENST00000493940 CECR2Q9BXF3 1484 aa24.86■■□□□ 1.57
HSPG2-212ENST00000493940 SMARCA4P51532 1647 aa24.4■■□□□ 1.5
HSPG2-212ENST00000493940 ATAD2BQ9ULI0 1458 aa24.32■■□□□ 1.48
HSPG2-212ENST00000493940 NCAPD3P42695 1498 aa24.32■■□□□ 1.48
HSPG2-212ENST00000493940 BAZ1AQ9NRL2 1556 aaPredicted RBP24.25■■□□□ 1.47
HSPG2-212ENST00000493940 MROH2BQ7Z745 1585 aa24.22■■□□□ 1.47
HSPG2-212ENST00000493940 DNAJC5Q9H3Z4 198 aa24.2■■□□□ 1.46
HSPG2-212ENST00000493940 SMARCA2P51531 1590 aa24.2■■□□□ 1.46
HSPG2-212ENST00000493940 HMGXB3Q12766 1538 aa24.15■■□□□ 1.46
HSPG2-212ENST00000493940 PEG3Q9GZU2 1588 aa24.13■■□□□ 1.45
HSPG2-212ENST00000493940 BAZ1BQ9UIG0 1483 aaKnown RBP24.05■■□□□ 1.44
HSPG2-212ENST00000493940 WIZO95785 1651 aa23.99■■□□□ 1.43
HSPG2-212ENST00000493940 NESP48681 1621 aa23.95■■□□□ 1.43
HSPG2-212ENST00000493940 CUX2O14529 1486 aa23.85■■□□□ 1.41
HSPG2-212ENST00000493940 RSF1Q96T23 1441 aaPredicted RBP23.79■■□□□ 1.4
HSPG2-212ENST00000493940 ERCC6Q03468 1493 aa23.77■■□□□ 1.4
HSPG2-212ENST00000493940 LAMC3Q9Y6N6 1575 aa23.7■■□□□ 1.38
HSPG2-212ENST00000493940 KIF21AQ7Z4S6 1674 aa23.68■■□□□ 1.38
HSPG2-212ENST00000493940 THOC2Q8NI27 1593 aaKnown RBP23.6■■□□□ 1.37
HSPG2-212ENST00000493940 TOP2AP11388 1531 aaKnown RBP23.59■■□□□ 1.37
HSPG2-212ENST00000493940 CADPSQ9ULU8 1353 aa23.58■■□□□ 1.37
HSPG2-212ENST00000493940 PDS5BQ9NTI5 1447 aa23.5■■□□□ 1.35
HSPG2-212ENST00000493940 CFTRP13569 1480 aa23.4■■□□□ 1.34
HSPG2-212ENST00000493940 CCDC88BA6NC98 1476 aa23.37■■□□□ 1.33
HSPG2-212ENST00000493940 FANCD2Q9BXW9 1451 aa23.33■■□□□ 1.33
HSPG2-212ENST00000493940 MRC2Q9UBG0 1479 aa23.32■■□□□ 1.32
HSPG2-212ENST00000493940 PRDM2Q13029 1718 aa23.3■■□□□ 1.32
HSPG2-212ENST00000493940 CEP164Q9UPV0 1460 aa23.29■■□□□ 1.32
HSPG2-212ENST00000493940 WDR62O43379 1518 aa23.28■■□□□ 1.32
HSPG2-212ENST00000493940 URB2Q14146 1524 aaKnown RBP23.18■■□□□ 1.3
HSPG2-212ENST00000493940 SUPT5HO00267 1087 aaKnown RBP22.99■■□□□ 1.27
HSPG2-212ENST00000493940 TRIM41Q8WV44 630 aa22.97■■□□□ 1.27
HSPG2-212ENST00000493940 TOPBP1Q92547 1522 aa22.96■■□□□ 1.27
HSPG2-212ENST00000493940 DNMBPQ6XZF7 1577 aa22.87■■□□□ 1.25
HSPG2-212ENST00000493940 ZNF608Q9ULD9 1512 aaPredicted RBP22.86■■□□□ 1.25
HSPG2-212ENST00000493940 ABCC8Q09428 1581 aa22.8■■□□□ 1.24
HSPG2-212ENST00000493940 IFT140Q96RY7 1462 aa22.79■■□□□ 1.24
HSPG2-212ENST00000493940 OSCARQ8IYS5 282 aa22.79■■□□□ 1.24
HSPG2-212ENST00000493940 TARBP1Q13395 1621 aaKnown RBP22.79■■□□□ 1.24
HSPG2-212ENST00000493940 POLA1P09884 1462 aaPredicted RBP22.73■■□□□ 1.23
HSPG2-212ENST00000493940 CUX1P39880 1505 aa22.72■■□□□ 1.23
HSPG2-212ENST00000493940 EIF4G3O43432 1585 aaKnown RBP22.71■■□□□ 1.23
HSPG2-212ENST00000493940 RAD54L2Q9Y4B4 1467 aa22.7■■□□□ 1.22
HSPG2-212ENST00000493940 AQRO60306 1485 aaKnown RBP eCLIP22.67■■□□□ 1.229e-8■■■■■ 72
HSPG2-212ENST00000493940 FGD5Q6ZNL6 1462 aa22.64■■□□□ 1.21
HSPG2-212ENST00000493940 SOGA1O94964 1423 aa22.61■■□□□ 1.21
HSPG2-212ENST00000493940 TDRD9Q8NDG6 1382 aaKnown RBP22.57■■□□□ 1.2
HSPG2-212ENST00000493940 CHD1O14646 1710 aa22.57■■□□□ 1.2
HSPG2-212ENST00000493940 WDR97A6NE52 1622 aa22.54■■□□□ 1.2
HSPG2-212ENST00000493940 SYNJ1O43426 1573 aa22.45■■□□□ 1.18
HSPG2-212ENST00000493940 BIVM-ERCC5R4GMW8 1640 aa22.43■■□□□ 1.18
HSPG2-212ENST00000493940 PBRM1Q86U86 1689 aa22.41■■□□□ 1.18
HSPG2-212ENST00000493940 RIMBP3CA6NJZ7 1639 aa22.41■■□□□ 1.18
HSPG2-212ENST00000493940 RIMBP3BA6NNM3 1639 aa22.41■■□□□ 1.18
HSPG2-212ENST00000493940 TOP2BQ02880 1626 aa22.41■■□□□ 1.18
HSPG2-212ENST00000493940 RIMBP3Q9UFD9 1639 aa22.41■■□□□ 1.18
HSPG2-212ENST00000493940 SNAPC4Q5SXM2 1469 aa22.41■■□□□ 1.18
HSPG2-212ENST00000493940 FBLN2P98095 1184 aa22.38■■□□□ 1.17
HSPG2-212ENST00000493940 ABCA10Q8WWZ4 1543 aa22.37■■□□□ 1.17
HSPG2-212ENST00000493940 WRNQ14191 1432 aaPredicted RBP eCLIP22.37■■□□□ 1.17
HSPG2-212ENST00000493940 ABCA5Q8WWZ7 1642 aa22.36■■□□□ 1.17
HSPG2-212ENST00000493940 GRIN2BQ13224 1484 aa22.34■■□□□ 1.17
HSPG2-212ENST00000493940 GAPVD1Q14C86 1478 aa22.34■■□□□ 1.17
HSPG2-212ENST00000493940 ARHGEF11O15085 1522 aa22.32■■□□□ 1.16
HSPG2-212ENST00000493940 MAGI1Q96QZ7 1491 aaPredicted RBP22.29■■□□□ 1.16
HSPG2-212ENST00000493940 CYB5RLQ6IPT4 315 aa22.25■■□□□ 1.15
HSPG2-212ENST00000493940 SYNJ2O15056 1496 aa22.24■■□□□ 1.15
HSPG2-212ENST00000493940 CHMP7Q8WUX9 453 aaPredicted RBP22.24■■□□□ 1.15
HSPG2-212ENST00000493940 CLASP1Q7Z460 1538 aa22.23■■□□□ 1.15
HSPG2-212ENST00000493940 ARAP1Q96P48 1450 aa22.15■■□□□ 1.14
HSPG2-212ENST00000493940 ADAMTS12P58397 1594 aa22.14■■□□□ 1.13
HSPG2-212ENST00000493940 GRIN2AQ12879 1464 aa22.09■■□□□ 1.13
HSPG2-212ENST00000493940 ERICH3Q5RHP9 1530 aa22.08■■□□□ 1.13
HSPG2-212ENST00000493940 CEP170Q5SW79 1584 aa22.08■■□□□ 1.12
HSPG2-212ENST00000493940 TRHP20396 242 aaPredicted RBP22.06■■□□□ 1.12
HSPG2-212ENST00000493940 FHAD1B1AJZ9 1412 aa22.03■■□□□ 1.12
HSPG2-212ENST00000493940 ERCC6L2Q5T890 1561 aa22.01■■□□□ 1.11
HSPG2-212ENST00000493940 NUP160Q12769 1436 aa22■■□□□ 1.11
HSPG2-212ENST00000493940 IGF1RP08069 1367 aa21.94■■□□□ 1.1
HSPG2-212ENST00000493940 SHROOM2Q13796 1616 aa21.93■■□□□ 1.1
HSPG2-212ENST00000493940 KIF27Q86VH2 1401 aa21.88■■□□□ 1.09
HSPG2-212ENST00000493940 RUSC2Q8N2Y8 1516 aa21.84■■□□□ 1.09
HSPG2-212ENST00000493940 CUL7Q14999 1698 aa21.83■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms