RNA–Protein interactions for RNA: ENST00000493627.1

NFIA-213, Transcript of nuclear factor I A, humanhuman

TSL 1 (best)

Gene NFIA, Length 696 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFIA-213ENST00000493627 NISCHQ9Y2I1 1504 aa22.87■■□□□ 1.25
NFIA-213ENST00000493627 CCDC180Q9P1Z9 1646 aa20.51■□□□□ 0.87
NFIA-213ENST00000493627 ABCC9O60706 1549 aa20.46■□□□□ 0.87
NFIA-213ENST00000493627 RB1CC1Q8TDY2 1594 aa19.49■□□□□ 0.71
NFIA-213ENST00000493627 NACADO15069 1562 aa19.37■□□□□ 0.69
NFIA-213ENST00000493627 DCAF8L2P0C7V8 631 aa19.21■□□□□ 0.67
NFIA-213ENST00000493627 MYO15BQ96JP2 1530 aa19.13■□□□□ 0.65
NFIA-213ENST00000493627 DNAJC5BQ9UF47 199 aa19.09■□□□□ 0.65
NFIA-213ENST00000493627 UNC13AQ9UPW8 1703 aa19.02■□□□□ 0.63
NFIA-213ENST00000493627 PABPN1Q86U42 306 aaKnown RBP eCLIP19.01■□□□□ 0.63
NFIA-213ENST00000493627 ZCCHC6Q5VYS8 1495 aaKnown RBP18.99■□□□□ 0.63
NFIA-213ENST00000493627 BICRAQ9NZM4 1560 aa18.92■□□□□ 0.62
NFIA-213ENST00000493627 DCAF1Q9Y4B6 1507 aa18.9■□□□□ 0.62
NFIA-213ENST00000493627 SHROOM4Q9ULL8 1493 aa18.71■□□□□ 0.59
NFIA-213ENST00000493627 SCRIBQ14160 1630 aa18.69■□□□□ 0.58
NFIA-213ENST00000493627 CC2D2AQ9P2K1 1620 aa18.48■□□□□ 0.55
NFIA-213ENST00000493627 EIF4G1Q04637 1599 aaKnown RBP18.47■□□□□ 0.55
NFIA-213ENST00000493627 CECR2Q9BXF3 1484 aa18.42■□□□□ 0.54
NFIA-213ENST00000493627 CHIC1Q5VXU3 224 aa18.29■□□□□ 0.52
NFIA-213ENST00000493627 AEBP2Q6ZN18 517 aaPredicted RBP18.26■□□□□ 0.51
NFIA-213ENST00000493627 NCAPD3P42695 1498 aa17.88■□□□□ 0.45
NFIA-213ENST00000493627 SMARCA4P51532 1647 aa17.83■□□□□ 0.45
NFIA-213ENST00000493627 ATAD2BQ9ULI0 1458 aa17.83■□□□□ 0.45
NFIA-213ENST00000493627 SMARCA2P51531 1590 aa17.79■□□□□ 0.44
NFIA-213ENST00000493627 HMGXB3Q12766 1538 aa17.77■□□□□ 0.44
NFIA-213ENST00000493627 BAZ1AQ9NRL2 1556 aaPredicted RBP17.75■□□□□ 0.43
NFIA-213ENST00000493627 BAZ1BQ9UIG0 1483 aaKnown RBP17.68■□□□□ 0.42
NFIA-213ENST00000493627 PEG3Q9GZU2 1588 aa17.67■□□□□ 0.42
NFIA-213ENST00000493627 ERCC6Q03468 1493 aa17.67■□□□□ 0.42
NFIA-213ENST00000493627 CUX2O14529 1486 aa17.62■□□□□ 0.41
NFIA-213ENST00000493627 MROH2BQ7Z745 1585 aa17.62■□□□□ 0.41
NFIA-213ENST00000493627 NESP48681 1621 aa17.58■□□□□ 0.4
NFIA-213ENST00000493627 DNAJC5Q9H3Z4 198 aa17.5■□□□□ 0.39
NFIA-213ENST00000493627 LAMC3Q9Y6N6 1575 aa17.48■□□□□ 0.39
NFIA-213ENST00000493627 THOC2Q8NI27 1593 aaKnown RBP17.42■□□□□ 0.38
NFIA-213ENST00000493627 WIZO95785 1651 aa17.39■□□□□ 0.37
NFIA-213ENST00000493627 PDS5BQ9NTI5 1447 aa17.36■□□□□ 0.37
NFIA-213ENST00000493627 KIF21AQ7Z4S6 1674 aa17.36■□□□□ 0.37
NFIA-213ENST00000493627 CADPSQ9ULU8 1353 aa17.33■□□□□ 0.36
NFIA-213ENST00000493627 RSF1Q96T23 1441 aaPredicted RBP17.27■□□□□ 0.35
NFIA-213ENST00000493627 MRC2Q9UBG0 1479 aa17.24■□□□□ 0.35
NFIA-213ENST00000493627 TOP2AP11388 1531 aaKnown RBP17.21■□□□□ 0.35
NFIA-213ENST00000493627 WDR62O43379 1518 aa17.2■□□□□ 0.34
NFIA-213ENST00000493627 CEP164Q9UPV0 1460 aa17.18■□□□□ 0.34
NFIA-213ENST00000493627 CFTRP13569 1480 aa17.16■□□□□ 0.34
NFIA-213ENST00000493627 FANCD2Q9BXW9 1451 aa17.15■□□□□ 0.34
NFIA-213ENST00000493627 URB2Q14146 1524 aaKnown RBP17.01■□□□□ 0.31
NFIA-213ENST00000493627 CCDC88BA6NC98 1476 aa16.99■□□□□ 0.31
NFIA-213ENST00000493627 PRDM2Q13029 1718 aa16.98■□□□□ 0.31
NFIA-213ENST00000493627 TOPBP1Q92547 1522 aa16.83■□□□□ 0.28
NFIA-213ENST00000493627 IFT140Q96RY7 1462 aa16.82■□□□□ 0.28
NFIA-213ENST00000493627 ABCC8Q09428 1581 aa16.78■□□□□ 0.28
NFIA-213ENST00000493627 DNMBPQ6XZF7 1577 aa16.78■□□□□ 0.28
NFIA-213ENST00000493627 ZNF608Q9ULD9 1512 aaPredicted RBP16.78■□□□□ 0.28
NFIA-213ENST00000493627 TRIM41Q8WV44 630 aa16.77■□□□□ 0.28
NFIA-213ENST00000493627 OSCARQ8IYS5 282 aa16.76■□□□□ 0.27
NFIA-213ENST00000493627 EIF4G3O43432 1585 aaKnown RBP16.72■□□□□ 0.27
NFIA-213ENST00000493627 TARBP1Q13395 1621 aaKnown RBP16.67■□□□□ 0.26
NFIA-213ENST00000493627 POLA1P09884 1462 aaPredicted RBP16.67■□□□□ 0.26
NFIA-213ENST00000493627 AQRO60306 1485 aaKnown RBP eCLIP16.62■□□□□ 0.25
NFIA-213ENST00000493627 RAD54L2Q9Y4B4 1467 aa16.59■□□□□ 0.25
NFIA-213ENST00000493627 RIMBP3CA6NJZ7 1639 aa16.59■□□□□ 0.25
NFIA-213ENST00000493627 RIMBP3BA6NNM3 1639 aa16.59■□□□□ 0.25
NFIA-213ENST00000493627 RIMBP3Q9UFD9 1639 aa16.59■□□□□ 0.25
NFIA-213ENST00000493627 FGD5Q6ZNL6 1462 aa16.57■□□□□ 0.24
NFIA-213ENST00000493627 CUX1P39880 1505 aa16.56■□□□□ 0.24
NFIA-213ENST00000493627 SOGA1O94964 1423 aa16.56■□□□□ 0.24
NFIA-213ENST00000493627 ARHGEF11O15085 1522 aa16.55■□□□□ 0.24
NFIA-213ENST00000493627 CHD1O14646 1710 aa16.55■□□□□ 0.24
NFIA-213ENST00000493627 WDR97A6NE52 1622 aa16.52■□□□□ 0.24
NFIA-213ENST00000493627 TDRD9Q8NDG6 1382 aaKnown RBP16.52■□□□□ 0.24
NFIA-213ENST00000493627 SUPT5HO00267 1087 aaKnown RBP16.49■□□□□ 0.23
NFIA-213ENST00000493627 SNAPC4Q5SXM2 1469 aa16.48■□□□□ 0.23
NFIA-213ENST00000493627 FBLN2P98095 1184 aa16.48■□□□□ 0.23
NFIA-213ENST00000493627 MAGI1Q96QZ7 1491 aaPredicted RBP16.44■□□□□ 0.22
NFIA-213ENST00000493627 GRIN2BQ13224 1484 aa16.43■□□□□ 0.22
NFIA-213ENST00000493627 ARAP1Q96P48 1450 aa16.4■□□□□ 0.22
NFIA-213ENST00000493627 CLASP1Q7Z460 1538 aa16.4■□□□□ 0.22
NFIA-213ENST00000493627 SYNJ2O15056 1496 aa16.38■□□□□ 0.21
NFIA-213ENST00000493627 GAPVD1Q14C86 1478 aa16.38■□□□□ 0.21
NFIA-213ENST00000493627 ABCA10Q8WWZ4 1543 aa16.38■□□□□ 0.21
NFIA-213ENST00000493627 SYNJ1O43426 1573 aa16.38■□□□□ 0.21
NFIA-213ENST00000493627 PBRM1Q86U86 1689 aa16.37■□□□□ 0.21
NFIA-213ENST00000493627 CYB5RLQ6IPT4 315 aa16.37■□□□□ 0.21
NFIA-213ENST00000493627 CHMP7Q8WUX9 453 aaPredicted RBP16.37■□□□□ 0.21
NFIA-213ENST00000493627 ABCA5Q8WWZ7 1642 aa16.37■□□□□ 0.21
NFIA-213ENST00000493627 WRNQ14191 1432 aaPredicted RBP eCLIP16.31■□□□□ 0.2
NFIA-213ENST00000493627 BIVM-ERCC5R4GMW8 1640 aa16.3■□□□□ 0.2
NFIA-213ENST00000493627 TOP2BQ02880 1626 aa16.3■□□□□ 0.2
NFIA-213ENST00000493627 ADAMTS12P58397 1594 aa16.25■□□□□ 0.19
NFIA-213ENST00000493627 GRIN2AQ12879 1464 aa16.24■□□□□ 0.19
NFIA-213ENST00000493627 TRHP20396 242 aaPredicted RBP16.18■□□□□ 0.18
NFIA-213ENST00000493627 ERICH3Q5RHP9 1530 aa16.18■□□□□ 0.18
NFIA-213ENST00000493627 FHAD1B1AJZ9 1412 aa16.18■□□□□ 0.18
NFIA-213ENST00000493627 NUP160Q12769 1436 aa16.18■□□□□ 0.18
NFIA-213ENST00000493627 CEP170Q5SW79 1584 aa16.17■□□□□ 0.18
NFIA-213ENST00000493627 ERCC6L2Q5T890 1561 aa16.13■□□□□ 0.17
NFIA-213ENST00000493627 PHF23Q9BUL5 403 aaPredicted RBP16.12■□□□□ 0.17
NFIA-213ENST00000493627 SHROOM2Q13796 1616 aa16.09■□□□□ 0.17
NFIA-213ENST00000493627 RUSC2Q8N2Y8 1516 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 141.1 ms