RNA–Protein interactions for RNA: ENST00000493387.5

LSM2-214, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 5

Gene LSM2, Length 767 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM2-214ENST00000493387 NISCHQ9Y2I1 1504 aa27.23■■□□□ 1.95
LSM2-214ENST00000493387 CCDC180Q9P1Z9 1646 aa24.02■■□□□ 1.44
LSM2-214ENST00000493387 ABCC9O60706 1549 aa23.13■■□□□ 1.29
LSM2-214ENST00000493387 ZCCHC6Q5VYS8 1495 aaKnown RBP22.75■■□□□ 1.23
LSM2-214ENST00000493387 DCAF8L2P0C7V8 631 aa22.63■■□□□ 1.21
LSM2-214ENST00000493387 DCAF1Q9Y4B6 1507 aa22.58■■□□□ 1.21
LSM2-214ENST00000493387 MYO15BQ96JP2 1530 aa22.56■■□□□ 1.2
LSM2-214ENST00000493387 NACADO15069 1562 aa22.55■■□□□ 1.2
LSM2-214ENST00000493387 RB1CC1Q8TDY2 1594 aa22.46■■□□□ 1.19
LSM2-214ENST00000493387 SCRIBQ14160 1630 aa21.91■■□□□ 1.1
LSM2-214ENST00000493387 UNC13AQ9UPW8 1703 aa21.83■■□□□ 1.08
LSM2-214ENST00000493387 PABPN1Q86U42 306 aaKnown RBP eCLIP21.71■■□□□ 1.07
LSM2-214ENST00000493387 SHROOM4Q9ULL8 1493 aa21.7■■□□□ 1.06
LSM2-214ENST00000493387 BICRAQ9NZM4 1560 aa21.7■■□□□ 1.06
LSM2-214ENST00000493387 CECR2Q9BXF3 1484 aa21.13■□□□□ 0.97
LSM2-214ENST00000493387 EIF4G1Q04637 1599 aaKnown RBP21.12■□□□□ 0.97
LSM2-214ENST00000493387 BAZ1AQ9NRL2 1556 aaPredicted RBP21.09■□□□□ 0.97
LSM2-214ENST00000493387 AEBP2Q6ZN18 517 aaPredicted RBP21.08■□□□□ 0.97
LSM2-214ENST00000493387 SMARCA4P51532 1647 aa21.01■□□□□ 0.95
LSM2-214ENST00000493387 MROH2BQ7Z745 1585 aa20.96■□□□□ 0.95
LSM2-214ENST00000493387 CC2D2AQ9P2K1 1620 aa20.93■□□□□ 0.94
LSM2-214ENST00000493387 RSF1Q96T23 1441 aaPredicted RBP20.89■□□□□ 0.94
LSM2-214ENST00000493387 DNAJC5BQ9UF47 199 aa20.88■□□□□ 0.93
LSM2-214ENST00000493387 SMARCA2P51531 1590 aa20.86■□□□□ 0.93
LSM2-214ENST00000493387 ATAD2BQ9ULI0 1458 aa20.84■□□□□ 0.93
LSM2-214ENST00000493387 PEG3Q9GZU2 1588 aa20.83■□□□□ 0.92
LSM2-214ENST00000493387 NCAPD3P42695 1498 aa20.81■□□□□ 0.92
LSM2-214ENST00000493387 WIZO95785 1651 aa20.72■□□□□ 0.91
LSM2-214ENST00000493387 HMGXB3Q12766 1538 aa20.71■□□□□ 0.91
LSM2-214ENST00000493387 BAZ1BQ9UIG0 1483 aaKnown RBP20.69■□□□□ 0.9
LSM2-214ENST00000493387 SUPT5HO00267 1087 aaKnown RBP20.67■□□□□ 0.9
LSM2-214ENST00000493387 TOP2AP11388 1531 aaKnown RBP20.58■□□□□ 0.89
LSM2-214ENST00000493387 CCDC88BA6NC98 1476 aa20.34■□□□□ 0.85
LSM2-214ENST00000493387 CADPSQ9ULU8 1353 aa20.22■□□□□ 0.83
LSM2-214ENST00000493387 CFTRP13569 1480 aa20.17■□□□□ 0.82
LSM2-214ENST00000493387 LAMC3Q9Y6N6 1575 aa20.17■□□□□ 0.82
LSM2-214ENST00000493387 CHIC1Q5VXU3 224 aa20.16■□□□□ 0.82
LSM2-214ENST00000493387 NESP48681 1621 aa20.1■□□□□ 0.81
LSM2-214ENST00000493387 PDS5BQ9NTI5 1447 aa20.07■□□□□ 0.8
LSM2-214ENST00000493387 PRDM2Q13029 1718 aa19.96■□□□□ 0.79
LSM2-214ENST00000493387 ERCC6Q03468 1493 aa19.96■□□□□ 0.79
LSM2-214ENST00000493387 FANCD2Q9BXW9 1451 aa19.96■□□□□ 0.79
LSM2-214ENST00000493387 CEP164Q9UPV0 1460 aa19.91■□□□□ 0.78
LSM2-214ENST00000493387 KIF21AQ7Z4S6 1674 aa19.84■□□□□ 0.77
LSM2-214ENST00000493387 MRC2Q9UBG0 1479 aa19.8■□□□□ 0.76
LSM2-214ENST00000493387 ABCC8Q09428 1581 aa19.77■□□□□ 0.76
LSM2-214ENST00000493387 THOC2Q8NI27 1593 aaKnown RBP19.71■□□□□ 0.75
LSM2-214ENST00000493387 WRNQ14191 1432 aaPredicted RBP eCLIP19.71■□□□□ 0.75
LSM2-214ENST00000493387 URB2Q14146 1524 aaKnown RBP19.71■□□□□ 0.75
LSM2-214ENST00000493387 WDR62O43379 1518 aa19.7■□□□□ 0.74
LSM2-214ENST00000493387 DNMBPQ6XZF7 1577 aa19.68■□□□□ 0.74
LSM2-214ENST00000493387 TOPBP1Q92547 1522 aa19.67■□□□□ 0.74
LSM2-214ENST00000493387 CUX1P39880 1505 aa19.64■□□□□ 0.73
LSM2-214ENST00000493387 CUX2O14529 1486 aa19.62■□□□□ 0.73
LSM2-214ENST00000493387 TOP2BQ02880 1626 aa19.58■□□□□ 0.73
LSM2-214ENST00000493387 BIVM-ERCC5R4GMW8 1640 aa19.56■□□□□ 0.72
LSM2-214ENST00000493387 SYNJ1O43426 1573 aa19.56■□□□□ 0.72
LSM2-214ENST00000493387 TRIM41Q8WV44 630 aa19.54■□□□□ 0.72
LSM2-214ENST00000493387 POLA1P09884 1462 aaPredicted RBP19.53■□□□□ 0.72
LSM2-214ENST00000493387 FGD5Q6ZNL6 1462 aa19.53■□□□□ 0.72
LSM2-214ENST00000493387 IFT140Q96RY7 1462 aa19.5■□□□□ 0.71
LSM2-214ENST00000493387 SOGA1O94964 1423 aa19.5■□□□□ 0.71
LSM2-214ENST00000493387 RAD54L2Q9Y4B4 1467 aa19.42■□□□□ 0.7
LSM2-214ENST00000493387 ABCA10Q8WWZ4 1543 aa19.4■□□□□ 0.7
LSM2-214ENST00000493387 TARBP1Q13395 1621 aaKnown RBP19.39■□□□□ 0.69
LSM2-214ENST00000493387 WDR97A6NE52 1622 aa19.33■□□□□ 0.69
LSM2-214ENST00000493387 TDRD9Q8NDG6 1382 aaKnown RBP19.32■□□□□ 0.68
LSM2-214ENST00000493387 ZNF608Q9ULD9 1512 aaPredicted RBP19.3■□□□□ 0.68
LSM2-214ENST00000493387 KIF27Q86VH2 1401 aa19.3■□□□□ 0.68
LSM2-214ENST00000493387 AQRO60306 1485 aaKnown RBP eCLIP19.28■□□□□ 0.683e-9■■■■■ 27.4
LSM2-214ENST00000493387 GAPVD1Q14C86 1478 aa19.26■□□□□ 0.67
LSM2-214ENST00000493387 EIF4G3O43432 1585 aaKnown RBP19.23■□□□□ 0.67
LSM2-214ENST00000493387 GRIN2BQ13224 1484 aa19.22■□□□□ 0.67
LSM2-214ENST00000493387 ABCA5Q8WWZ7 1642 aa19.22■□□□□ 0.67
LSM2-214ENST00000493387 EEA1Q15075 1411 aa19.21■□□□□ 0.67
LSM2-214ENST00000493387 ERICH3Q5RHP9 1530 aa19.17■□□□□ 0.66
LSM2-214ENST00000493387 IGF1RP08069 1367 aa19.15■□□□□ 0.66
LSM2-214ENST00000493387 MAGI1Q96QZ7 1491 aaPredicted RBP19.13■□□□□ 0.65
LSM2-214ENST00000493387 RUSC2Q8N2Y8 1516 aa19.13■□□□□ 0.65
LSM2-214ENST00000493387 PBRM1Q86U86 1689 aa19.11■□□□□ 0.65
LSM2-214ENST00000493387 CSRNP3Q8WYN3 585 aa19.11■□□□□ 0.65
LSM2-214ENST00000493387 SNAPC4Q5SXM2 1469 aa19.1■□□□□ 0.65
LSM2-214ENST00000493387 FHAD1B1AJZ9 1412 aa19.08■□□□□ 0.64
LSM2-214ENST00000493387 FAM9AQ8IZU1 332 aaPredicted RBP19.07■□□□□ 0.64
LSM2-214ENST00000493387 CARMIL1Q5VZK9 1371 aa19.06■□□□□ 0.64
LSM2-214ENST00000493387 CHMP7Q8WUX9 453 aaPredicted RBP19.05■□□□□ 0.64
LSM2-214ENST00000493387 CUL7Q14999 1698 aa19.05■□□□□ 0.64
LSM2-214ENST00000493387 SYNJ2O15056 1496 aa19.04■□□□□ 0.64
LSM2-214ENST00000493387 ADAMTS12P58397 1594 aa19.02■□□□□ 0.64
LSM2-214ENST00000493387 FBLN2P98095 1184 aa19.01■□□□□ 0.63
LSM2-214ENST00000493387 PRXQ9BXM0 1461 aa18.98■□□□□ 0.63
LSM2-214ENST00000493387 RAPGEF2Q9Y4G8 1499 aa18.97■□□□□ 0.63
LSM2-214ENST00000493387 GRIN2AQ12879 1464 aa18.95■□□□□ 0.62
LSM2-214ENST00000493387 OSCARQ8IYS5 282 aa18.92■□□□□ 0.62
LSM2-214ENST00000493387 KIF21BO75037 1637 aa18.89■□□□□ 0.62
LSM2-214ENST00000493387 CHD1O14646 1710 aa18.89■□□□□ 0.61
LSM2-214ENST00000493387 NUP160Q12769 1436 aa18.86■□□□□ 0.61
LSM2-214ENST00000493387 GOLGA3Q08378 1498 aa18.84■□□□□ 0.61
LSM2-214ENST00000493387 UBTFP17480 764 aaKnown RBP18.8■□□□□ 0.6
LSM2-214ENST00000493387 KIAA0586Q9BVV6 1533 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms