RNA–Protein interactions for RNA: ENST00000493166.1

CLIP2-209, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

TSL 4

Gene CLIP2, Length 561 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-209ENST00000493166 NISCHQ9Y2I1 1504 aa30.96■■■□□ 2.55
CLIP2-209ENST00000493166 CCDC180Q9P1Z9 1646 aa27.59■■■□□ 2.01
CLIP2-209ENST00000493166 ABCC9O60706 1549 aa26.82■■□□□ 1.88
CLIP2-209ENST00000493166 RB1CC1Q8TDY2 1594 aa25.89■■□□□ 1.73
CLIP2-209ENST00000493166 NACADO15069 1562 aa25.85■■□□□ 1.73
CLIP2-209ENST00000493166 ZCCHC6Q5VYS8 1495 aaKnown RBP25.81■■□□□ 1.72
CLIP2-209ENST00000493166 DCAF8L2P0C7V8 631 aa25.79■■□□□ 1.72
CLIP2-209ENST00000493166 MYO15BQ96JP2 1530 aa25.68■■□□□ 1.7
CLIP2-209ENST00000493166 DCAF1Q9Y4B6 1507 aa25.62■■□□□ 1.69
CLIP2-209ENST00000493166 UNC13AQ9UPW8 1703 aa25.42■■□□□ 1.66
CLIP2-209ENST00000493166 SCRIBQ14160 1630 aa25.15■■□□□ 1.62
CLIP2-209ENST00000493166 BICRAQ9NZM4 1560 aa25.08■■□□□ 1.61
CLIP2-209ENST00000493166 PABPN1Q86U42 306 aaKnown RBP eCLIP25.03■■□□□ 1.6
CLIP2-209ENST00000493166 SHROOM4Q9ULL8 1493 aa24.81■■□□□ 1.56
CLIP2-209ENST00000493166 DNAJC5BQ9UF47 199 aa24.62■■□□□ 1.53
CLIP2-209ENST00000493166 EIF4G1Q04637 1599 aaKnown RBP24.42■■□□□ 1.5
CLIP2-209ENST00000493166 CC2D2AQ9P2K1 1620 aa24.32■■□□□ 1.48
CLIP2-209ENST00000493166 CECR2Q9BXF3 1484 aa24.08■■□□□ 1.45
CLIP2-209ENST00000493166 SMARCA4P51532 1647 aa24.06■■□□□ 1.44
CLIP2-209ENST00000493166 BAZ1AQ9NRL2 1556 aaPredicted RBP24.02■■□□□ 1.44
CLIP2-209ENST00000493166 SMARCA2P51531 1590 aa23.86■■□□□ 1.41
CLIP2-209ENST00000493166 MROH2BQ7Z745 1585 aa23.86■■□□□ 1.41
CLIP2-209ENST00000493166 ATAD2BQ9ULI0 1458 aa23.83■■□□□ 1.41
CLIP2-209ENST00000493166 NCAPD3P42695 1498 aa23.79■■□□□ 1.4
CLIP2-209ENST00000493166 PEG3Q9GZU2 1588 aa23.78■■□□□ 1.4
CLIP2-209ENST00000493166 HMGXB3Q12766 1538 aa23.75■■□□□ 1.39
CLIP2-209ENST00000493166 BAZ1BQ9UIG0 1483 aaKnown RBP23.68■■□□□ 1.38
CLIP2-209ENST00000493166 WIZO95785 1651 aa23.67■■□□□ 1.38
CLIP2-209ENST00000493166 RSF1Q96T23 1441 aaPredicted RBP23.58■■□□□ 1.36
CLIP2-209ENST00000493166 TOP2AP11388 1531 aaKnown RBP23.38■■□□□ 1.33
CLIP2-209ENST00000493166 LAMC3Q9Y6N6 1575 aa23.23■■□□□ 1.31
CLIP2-209ENST00000493166 NESP48681 1621 aa23.23■■□□□ 1.31
CLIP2-209ENST00000493166 ERCC6Q03468 1493 aa23.14■■□□□ 1.29
CLIP2-209ENST00000493166 CADPSQ9ULU8 1353 aa23.1■■□□□ 1.29
CLIP2-209ENST00000493166 KIF21AQ7Z4S6 1674 aa23.07■■□□□ 1.28
CLIP2-209ENST00000493166 CCDC88BA6NC98 1476 aa23.07■■□□□ 1.28
CLIP2-209ENST00000493166 PRDM2Q13029 1718 aa23.03■■□□□ 1.28
CLIP2-209ENST00000493166 SUPT5HO00267 1087 aaKnown RBP23.03■■□□□ 1.28
CLIP2-209ENST00000493166 PDS5BQ9NTI5 1447 aa23.02■■□□□ 1.28
CLIP2-209ENST00000493166 CFTRP13569 1480 aa22.99■■□□□ 1.27
CLIP2-209ENST00000493166 THOC2Q8NI27 1593 aaKnown RBP22.93■■□□□ 1.26
CLIP2-209ENST00000493166 FANCD2Q9BXW9 1451 aa22.87■■□□□ 1.25
CLIP2-209ENST00000493166 CEP164Q9UPV0 1460 aa22.86■■□□□ 1.25
CLIP2-209ENST00000493166 CUX2O14529 1486 aa22.85■■□□□ 1.25
CLIP2-209ENST00000493166 MRC2Q9UBG0 1479 aa22.79■■□□□ 1.24
CLIP2-209ENST00000493166 WDR62O43379 1518 aa22.74■■□□□ 1.23
CLIP2-209ENST00000493166 URB2Q14146 1524 aaKnown RBP22.64■■□□□ 1.21
CLIP2-209ENST00000493166 DNMBPQ6XZF7 1577 aa22.55■■□□□ 1.2
CLIP2-209ENST00000493166 ABCC8Q09428 1581 aa22.53■■□□□ 1.2
CLIP2-209ENST00000493166 TOPBP1Q92547 1522 aa22.52■■□□□ 1.2
CLIP2-209ENST00000493166 DNAJC5Q9H3Z4 198 aa22.42■■□□□ 1.18
CLIP2-209ENST00000493166 CUX1P39880 1505 aa22.39■■□□□ 1.17
CLIP2-209ENST00000493166 IFT140Q96RY7 1462 aa22.35■■□□□ 1.17
CLIP2-209ENST00000493166 POLA1P09884 1462 aaPredicted RBP22.33■■□□□ 1.16
CLIP2-209ENST00000493166 TARBP1Q13395 1621 aaKnown RBP22.31■■□□□ 1.16
CLIP2-209ENST00000493166 FGD5Q6ZNL6 1462 aa22.3■■□□□ 1.16
CLIP2-209ENST00000493166 BIVM-ERCC5R4GMW8 1640 aa22.28■■□□□ 1.16
CLIP2-209ENST00000493166 WRNQ14191 1432 aaPredicted RBP eCLIP22.25■■□□□ 1.15
CLIP2-209ENST00000493166 TOP2BQ02880 1626 aa22.25■■□□□ 1.15
CLIP2-209ENST00000493166 ZNF608Q9ULD9 1512 aaPredicted RBP22.25■■□□□ 1.15
CLIP2-209ENST00000493166 SYNJ1O43426 1573 aa22.25■■□□□ 1.15
CLIP2-209ENST00000493166 EIF4G3O43432 1585 aaKnown RBP22.24■■□□□ 1.15
CLIP2-209ENST00000493166 RAD54L2Q9Y4B4 1467 aa22.22■■□□□ 1.15
CLIP2-209ENST00000493166 SOGA1O94964 1423 aa22.22■■□□□ 1.15
CLIP2-209ENST00000493166 WDR97A6NE52 1622 aa22.2■■□□□ 1.14
CLIP2-209ENST00000493166 AQRO60306 1485 aaKnown RBP eCLIP22.11■■□□□ 1.136e-7■■■□□ 15.2
CLIP2-209ENST00000493166 ABCA10Q8WWZ4 1543 aa22.08■■□□□ 1.13
CLIP2-209ENST00000493166 TDRD9Q8NDG6 1382 aaKnown RBP22.07■■□□□ 1.12
CLIP2-209ENST00000493166 PBRM1Q86U86 1689 aa22.07■■□□□ 1.12
CLIP2-209ENST00000493166 ABCA5Q8WWZ7 1642 aa22.04■■□□□ 1.12
CLIP2-209ENST00000493166 CHD1O14646 1710 aa22■■□□□ 1.11
CLIP2-209ENST00000493166 GAPVD1Q14C86 1478 aa21.99■■□□□ 1.11
CLIP2-209ENST00000493166 GRIN2BQ13224 1484 aa21.97■■□□□ 1.11
CLIP2-209ENST00000493166 SNAPC4Q5SXM2 1469 aa21.95■■□□□ 1.1
CLIP2-209ENST00000493166 MAGI1Q96QZ7 1491 aaPredicted RBP21.92■■□□□ 1.1
CLIP2-209ENST00000493166 OSCARQ8IYS5 282 aa21.86■■□□□ 1.09
CLIP2-209ENST00000493166 ERICH3Q5RHP9 1530 aa21.84■■□□□ 1.09
CLIP2-209ENST00000493166 FBLN2P98095 1184 aa21.83■■□□□ 1.09
CLIP2-209ENST00000493166 SYNJ2O15056 1496 aa21.83■■□□□ 1.08
CLIP2-209ENST00000493166 ADAMTS12P58397 1594 aa21.82■■□□□ 1.08
CLIP2-209ENST00000493166 KIF27Q86VH2 1401 aa21.79■■□□□ 1.08
CLIP2-209ENST00000493166 CHMP7Q8WUX9 453 aaPredicted RBP21.77■■□□□ 1.08
CLIP2-209ENST00000493166 TRIM41Q8WV44 630 aa21.75■■□□□ 1.07
CLIP2-209ENST00000493166 FHAD1B1AJZ9 1412 aa21.72■■□□□ 1.07
CLIP2-209ENST00000493166 CUL7Q14999 1698 aa21.72■■□□□ 1.07
CLIP2-209ENST00000493166 GRIN2AQ12879 1464 aa21.7■■□□□ 1.06
CLIP2-209ENST00000493166 CLASP1Q7Z460 1538 aa21.66■■□□□ 1.06
CLIP2-209ENST00000493166 IGF1RP08069 1367 aa21.63■■□□□ 1.05
CLIP2-209ENST00000493166 RIMBP3CA6NJZ7 1639 aa21.62■■□□□ 1.05
CLIP2-209ENST00000493166 RIMBP3BA6NNM3 1639 aa21.62■■□□□ 1.05
CLIP2-209ENST00000493166 RIMBP3Q9UFD9 1639 aa21.62■■□□□ 1.05
CLIP2-209ENST00000493166 CEP170Q5SW79 1584 aa21.61■■□□□ 1.05
CLIP2-209ENST00000493166 RUSC2Q8N2Y8 1516 aa21.6■■□□□ 1.05
CLIP2-209ENST00000493166 NUP160Q12769 1436 aa21.57■■□□□ 1.04
CLIP2-209ENST00000493166 ARHGEF11O15085 1522 aa21.57■■□□□ 1.04
CLIP2-209ENST00000493166 CARMIL1Q5VZK9 1371 aa21.53■■□□□ 1.04
CLIP2-209ENST00000493166 CHIC1Q5VXU3 224 aa21.51■■□□□ 1.03
CLIP2-209ENST00000493166 SHROOM2Q13796 1616 aa21.47■■□□□ 1.03
CLIP2-209ENST00000493166 RAPGEF2Q9Y4G8 1499 aa21.45■■□□□ 1.02
CLIP2-209ENST00000493166 EEA1Q15075 1411 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms