RNA–Protein interactions for RNA: ENST00000491685.5

TMEM39A-211, Transcript of transmembrane protein 39A, humanhuman

TSL 5

Gene TMEM39A, Length 852 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-211ENST00000491685 NISCHQ9Y2I1 1504 aa27.64■■■□□ 2.02
TMEM39A-211ENST00000491685 CCDC180Q9P1Z9 1646 aa24.84■■□□□ 1.57
TMEM39A-211ENST00000491685 ABCC9O60706 1549 aa24.71■■□□□ 1.55
TMEM39A-211ENST00000491685 RB1CC1Q8TDY2 1594 aa23.54■■□□□ 1.36
TMEM39A-211ENST00000491685 DNAJC5BQ9UF47 199 aa23.5■■□□□ 1.35
TMEM39A-211ENST00000491685 NACADO15069 1562 aa23.38■■□□□ 1.33
TMEM39A-211ENST00000491685 UNC13AQ9UPW8 1703 aa23.19■■□□□ 1.3
TMEM39A-211ENST00000491685 DCAF8L2P0C7V8 631 aa23.17■■□□□ 1.3
TMEM39A-211ENST00000491685 MYO15BQ96JP2 1530 aa23.06■■□□□ 1.28
TMEM39A-211ENST00000491685 PABPN1Q86U42 306 aaKnown RBP eCLIP22.96■■□□□ 1.27
TMEM39A-211ENST00000491685 ZCCHC6Q5VYS8 1495 aaKnown RBP22.96■■□□□ 1.27
TMEM39A-211ENST00000491685 BICRAQ9NZM4 1560 aa22.93■■□□□ 1.26
TMEM39A-211ENST00000491685 DCAF1Q9Y4B6 1507 aa22.82■■□□□ 1.24
TMEM39A-211ENST00000491685 SCRIBQ14160 1630 aa22.66■■□□□ 1.22
TMEM39A-211ENST00000491685 SHROOM4Q9ULL8 1493 aa22.5■■□□□ 1.19
TMEM39A-211ENST00000491685 CC2D2AQ9P2K1 1620 aa22.38■■□□□ 1.17
TMEM39A-211ENST00000491685 EIF4G1Q04637 1599 aaKnown RBP22.33■■□□□ 1.16
TMEM39A-211ENST00000491685 CECR2Q9BXF3 1484 aa22.32■■□□□ 1.16
TMEM39A-211ENST00000491685 DNAJC5Q9H3Z4 198 aa21.93■■□□□ 1.1
TMEM39A-211ENST00000491685 SMARCA4P51532 1647 aa21.6■■□□□ 1.05
TMEM39A-211ENST00000491685 NCAPD3P42695 1498 aa21.56■■□□□ 1.04
TMEM39A-211ENST00000491685 CUX2O14529 1486 aa21.55■■□□□ 1.04
TMEM39A-211ENST00000491685 ATAD2BQ9ULI0 1458 aa21.54■■□□□ 1.04
TMEM39A-211ENST00000491685 SMARCA2P51531 1590 aa21.47■■□□□ 1.03
TMEM39A-211ENST00000491685 HMGXB3Q12766 1538 aa21.46■■□□□ 1.03
TMEM39A-211ENST00000491685 BAZ1AQ9NRL2 1556 aaPredicted RBP21.44■■□□□ 1.02
TMEM39A-211ENST00000491685 ERCC6Q03468 1493 aa21.38■■□□□ 1.01
TMEM39A-211ENST00000491685 PEG3Q9GZU2 1588 aa21.36■■□□□ 1.01
TMEM39A-211ENST00000491685 MROH2BQ7Z745 1585 aa21.34■■□□□ 1.01
TMEM39A-211ENST00000491685 BAZ1BQ9UIG0 1483 aaKnown RBP21.32■■□□□ 1
TMEM39A-211ENST00000491685 NESP48681 1621 aa21.29■■□□□ 1
TMEM39A-211ENST00000491685 WIZO95785 1651 aa21.14■□□□□ 0.97
TMEM39A-211ENST00000491685 THOC2Q8NI27 1593 aaKnown RBP21.1■□□□□ 0.97
TMEM39A-211ENST00000491685 LAMC3Q9Y6N6 1575 aa21.1■□□□□ 0.97
TMEM39A-211ENST00000491685 KIF21AQ7Z4S6 1674 aa21.09■□□□□ 0.97
TMEM39A-211ENST00000491685 PDS5BQ9NTI5 1447 aa20.89■□□□□ 0.94
TMEM39A-211ENST00000491685 CADPSQ9ULU8 1353 aa20.88■□□□□ 0.93
TMEM39A-211ENST00000491685 RSF1Q96T23 1441 aaPredicted RBP20.87■□□□□ 0.93
TMEM39A-211ENST00000491685 TOP2AP11388 1531 aaKnown RBP20.82■□□□□ 0.92
TMEM39A-211ENST00000491685 MRC2Q9UBG0 1479 aa20.79■□□□□ 0.92
TMEM39A-211ENST00000491685 WDR62O43379 1518 aa20.78■□□□□ 0.92
TMEM39A-211ENST00000491685 TRIM41Q8WV44 630 aa20.72■□□□□ 0.91
TMEM39A-211ENST00000491685 CEP164Q9UPV0 1460 aa20.71■□□□□ 0.91
TMEM39A-211ENST00000491685 CFTRP13569 1480 aa20.7■□□□□ 0.9
TMEM39A-211ENST00000491685 FANCD2Q9BXW9 1451 aa20.69■□□□□ 0.9
TMEM39A-211ENST00000491685 PRDM2Q13029 1718 aa20.67■□□□□ 0.9
TMEM39A-211ENST00000491685 URB2Q14146 1524 aaKnown RBP20.57■□□□□ 0.88
TMEM39A-211ENST00000491685 CCDC88BA6NC98 1476 aa20.56■□□□□ 0.88
TMEM39A-211ENST00000491685 OSCARQ8IYS5 282 aa20.37■□□□□ 0.85
TMEM39A-211ENST00000491685 TOPBP1Q92547 1522 aa20.34■□□□□ 0.85
TMEM39A-211ENST00000491685 ZNF608Q9ULD9 1512 aaPredicted RBP20.31■□□□□ 0.84
TMEM39A-211ENST00000491685 RIMBP3CA6NJZ7 1639 aa20.29■□□□□ 0.84
TMEM39A-211ENST00000491685 RIMBP3BA6NNM3 1639 aa20.29■□□□□ 0.84
TMEM39A-211ENST00000491685 RIMBP3Q9UFD9 1639 aa20.29■□□□□ 0.84
TMEM39A-211ENST00000491685 DNMBPQ6XZF7 1577 aa20.29■□□□□ 0.84
TMEM39A-211ENST00000491685 IFT140Q96RY7 1462 aa20.27■□□□□ 0.84
TMEM39A-211ENST00000491685 EIF4G3O43432 1585 aaKnown RBP20.25■□□□□ 0.83
TMEM39A-211ENST00000491685 TARBP1Q13395 1621 aaKnown RBP20.2■□□□□ 0.82
TMEM39A-211ENST00000491685 ABCC8Q09428 1581 aa20.2■□□□□ 0.82
TMEM39A-211ENST00000491685 ARHGEF11O15085 1522 aa20.15■□□□□ 0.82
TMEM39A-211ENST00000491685 POLA1P09884 1462 aaPredicted RBP20.13■□□□□ 0.81
TMEM39A-211ENST00000491685 CHD1O14646 1710 aa20.12■□□□□ 0.81
TMEM39A-211ENST00000491685 AQRO60306 1485 aaKnown RBP eCLIP20.09■□□□□ 0.812e-7■■■■□ 23.8
TMEM39A-211ENST00000491685 RAD54L2Q9Y4B4 1467 aa20.06■□□□□ 0.8
TMEM39A-211ENST00000491685 CUX1P39880 1505 aa20.05■□□□□ 0.8
TMEM39A-211ENST00000491685 FGD5Q6ZNL6 1462 aa20.03■□□□□ 0.8
TMEM39A-211ENST00000491685 WDR97A6NE52 1622 aa19.99■□□□□ 0.79
TMEM39A-211ENST00000491685 SOGA1O94964 1423 aa19.98■□□□□ 0.79
TMEM39A-211ENST00000491685 TDRD9Q8NDG6 1382 aaKnown RBP19.95■□□□□ 0.78
TMEM39A-211ENST00000491685 SUPT5HO00267 1087 aaKnown RBP19.93■□□□□ 0.78
TMEM39A-211ENST00000491685 SNAPC4Q5SXM2 1469 aa19.92■□□□□ 0.78
TMEM39A-211ENST00000491685 ARAP1Q96P48 1450 aa19.91■□□□□ 0.78
TMEM39A-211ENST00000491685 PBRM1Q86U86 1689 aa19.9■□□□□ 0.78
TMEM39A-211ENST00000491685 CYB5RLQ6IPT4 315 aa19.89■□□□□ 0.77
TMEM39A-211ENST00000491685 FBLN2P98095 1184 aa19.84■□□□□ 0.77
TMEM39A-211ENST00000491685 CLASP1Q7Z460 1538 aa19.83■□□□□ 0.77
TMEM39A-211ENST00000491685 ABCA5Q8WWZ7 1642 aa19.83■□□□□ 0.76
TMEM39A-211ENST00000491685 GRIN2BQ13224 1484 aa19.81■□□□□ 0.76
TMEM39A-211ENST00000491685 MAGI1Q96QZ7 1491 aaPredicted RBP19.81■□□□□ 0.76
TMEM39A-211ENST00000491685 TRHP20396 242 aaPredicted RBP19.8■□□□□ 0.76
TMEM39A-211ENST00000491685 ABCA10Q8WWZ4 1543 aa19.78■□□□□ 0.76
TMEM39A-211ENST00000491685 BIVM-ERCC5R4GMW8 1640 aa19.78■□□□□ 0.76
TMEM39A-211ENST00000491685 SYNJ1O43426 1573 aa19.77■□□□□ 0.76
TMEM39A-211ENST00000491685 GAPVD1Q14C86 1478 aa19.76■□□□□ 0.75
TMEM39A-211ENST00000491685 SYNJ2O15056 1496 aa19.75■□□□□ 0.75
TMEM39A-211ENST00000491685 TOP2BQ02880 1626 aa19.74■□□□□ 0.75
TMEM39A-211ENST00000491685 CHMP7Q8WUX9 453 aaPredicted RBP19.69■□□□□ 0.74
TMEM39A-211ENST00000491685 ADAMTS12P58397 1594 aa19.67■□□□□ 0.74
TMEM39A-211ENST00000491685 WRNQ14191 1432 aaPredicted RBP eCLIP19.67■□□□□ 0.74
TMEM39A-211ENST00000491685 GRIN2AQ12879 1464 aa19.6■□□□□ 0.73
TMEM39A-211ENST00000491685 CEP170Q5SW79 1584 aa19.59■□□□□ 0.73
TMEM39A-211ENST00000491685 ERCC6L2Q5T890 1561 aa19.57■□□□□ 0.72
TMEM39A-211ENST00000491685 AEBP2Q6ZN18 517 aaPredicted RBP19.56■□□□□ 0.72
TMEM39A-211ENST00000491685 ERICH3Q5RHP9 1530 aa19.53■□□□□ 0.72
TMEM39A-211ENST00000491685 NUP160Q12769 1436 aa19.51■□□□□ 0.71
TMEM39A-211ENST00000491685 SHROOM2Q13796 1616 aa19.5■□□□□ 0.71
TMEM39A-211ENST00000491685 FHAD1B1AJZ9 1412 aa19.5■□□□□ 0.71
TMEM39A-211ENST00000491685 RUSC2Q8N2Y8 1516 aa19.41■□□□□ 0.7
TMEM39A-211ENST00000491685 KIF13AQ9H1H9 1805 aa19.32■□□□□ 0.68
TMEM39A-211ENST00000491685 CUL7Q14999 1698 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms