RNA–Protein interactions for RNA: ENST00000491421.5

LSM2-213, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM2, Length 820 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM2-213ENST00000491421 NISCHQ9Y2I1 1504 aa20.43■□□□□ 0.86
LSM2-213ENST00000491421 CCDC180Q9P1Z9 1646 aa18.23■□□□□ 0.51
LSM2-213ENST00000491421 ABCC9O60706 1549 aa18.14■□□□□ 0.49
LSM2-213ENST00000491421 RB1CC1Q8TDY2 1594 aa17.32■□□□□ 0.36
LSM2-213ENST00000491421 NACADO15069 1562 aa17.23■□□□□ 0.35
LSM2-213ENST00000491421 DCAF8L2P0C7V8 631 aa17.22■□□□□ 0.35
LSM2-213ENST00000491421 MYO15BQ96JP2 1530 aa17.05■□□□□ 0.32
LSM2-213ENST00000491421 ZCCHC6Q5VYS8 1495 aaKnown RBP16.97■□□□□ 0.31
LSM2-213ENST00000491421 PABPN1Q86U42 306 aaKnown RBP eCLIP16.92■□□□□ 0.3
LSM2-213ENST00000491421 DCAF1Q9Y4B6 1507 aa16.88■□□□□ 0.29
LSM2-213ENST00000491421 DNAJC5BQ9UF47 199 aa16.87■□□□□ 0.29
LSM2-213ENST00000491421 UNC13AQ9UPW8 1703 aa16.83■□□□□ 0.28
LSM2-213ENST00000491421 BICRAQ9NZM4 1560 aa16.78■□□□□ 0.28
LSM2-213ENST00000491421 SCRIBQ14160 1630 aa16.66■□□□□ 0.26
LSM2-213ENST00000491421 SHROOM4Q9ULL8 1493 aa16.61■□□□□ 0.25
LSM2-213ENST00000491421 EIF4G1Q04637 1599 aaKnown RBP16.38■□□□□ 0.21
LSM2-213ENST00000491421 CC2D2AQ9P2K1 1620 aa16.37■□□□□ 0.21
LSM2-213ENST00000491421 CECR2Q9BXF3 1484 aa16.33■□□□□ 0.2
LSM2-213ENST00000491421 NCAPD3P42695 1498 aa15.91■□□□□ 0.14
LSM2-213ENST00000491421 SMARCA4P51532 1647 aa15.89■□□□□ 0.13
LSM2-213ENST00000491421 ATAD2BQ9ULI0 1458 aa15.89■□□□□ 0.13
LSM2-213ENST00000491421 BAZ1AQ9NRL2 1556 aaPredicted RBP15.86■□□□□ 0.13
LSM2-213ENST00000491421 SMARCA2P51531 1590 aa15.85■□□□□ 0.13
LSM2-213ENST00000491421 HMGXB3Q12766 1538 aa15.81■□□□□ 0.12
LSM2-213ENST00000491421 BAZ1BQ9UIG0 1483 aaKnown RBP15.76■□□□□ 0.11
LSM2-213ENST00000491421 MROH2BQ7Z745 1585 aa15.75■□□□□ 0.11
LSM2-213ENST00000491421 PEG3Q9GZU2 1588 aa15.74■□□□□ 0.11
LSM2-213ENST00000491421 ERCC6Q03468 1493 aa15.67■□□□□ 0.1
LSM2-213ENST00000491421 NESP48681 1621 aa15.61■□□□□ 0.09
LSM2-213ENST00000491421 CUX2O14529 1486 aa15.58■□□□□ 0.08
LSM2-213ENST00000491421 WIZO95785 1651 aa15.53■□□□□ 0.08
LSM2-213ENST00000491421 LAMC3Q9Y6N6 1575 aa15.52■□□□□ 0.07
LSM2-213ENST00000491421 RSF1Q96T23 1441 aaPredicted RBP15.49■□□□□ 0.07
LSM2-213ENST00000491421 PDS5BQ9NTI5 1447 aa15.46■□□□□ 0.07
LSM2-213ENST00000491421 CADPSQ9ULU8 1353 aa15.46■□□□□ 0.07
LSM2-213ENST00000491421 THOC2Q8NI27 1593 aaKnown RBP15.41■□□□□ 0.06
LSM2-213ENST00000491421 DNAJC5Q9H3Z4 198 aa15.4■□□□□ 0.06
LSM2-213ENST00000491421 TOP2AP11388 1531 aaKnown RBP15.38■□□□□ 0.05
LSM2-213ENST00000491421 KIF21AQ7Z4S6 1674 aa15.37■□□□□ 0.05
LSM2-213ENST00000491421 MRC2Q9UBG0 1479 aa15.31■□□□□ 0.04
LSM2-213ENST00000491421 CFTRP13569 1480 aa15.29■□□□□ 0.04
LSM2-213ENST00000491421 CEP164Q9UPV0 1460 aa15.28■□□□□ 0.04
LSM2-213ENST00000491421 FANCD2Q9BXW9 1451 aa15.27■□□□□ 0.04
LSM2-213ENST00000491421 WDR62O43379 1518 aa15.25■□□□□ 0.03
LSM2-213ENST00000491421 CCDC88BA6NC98 1476 aa15.2■□□□□ 0.02
LSM2-213ENST00000491421 URB2Q14146 1524 aaKnown RBP15.13■□□□□ 0.01
LSM2-213ENST00000491421 PRDM2Q13029 1718 aa15.07■□□□□ 0
LSM2-213ENST00000491421 TOPBP1Q92547 1522 aa14.99□□□□□ -0.01
LSM2-213ENST00000491421 ABCC8Q09428 1581 aa14.98□□□□□ -0.01
LSM2-213ENST00000491421 IFT140Q96RY7 1462 aa14.97□□□□□ -0.01
LSM2-213ENST00000491421 DNMBPQ6XZF7 1577 aa14.94□□□□□ -0.02
LSM2-213ENST00000491421 SUPT5HO00267 1087 aaKnown RBP14.93□□□□□ -0.02
LSM2-213ENST00000491421 ZNF608Q9ULD9 1512 aaPredicted RBP14.92□□□□□ -0.02
LSM2-213ENST00000491421 OSCARQ8IYS5 282 aa14.9□□□□□ -0.02
LSM2-213ENST00000491421 POLA1P09884 1462 aaPredicted RBP14.85□□□□□ -0.03
LSM2-213ENST00000491421 EIF4G3O43432 1585 aaKnown RBP14.83□□□□□ -0.04
LSM2-213ENST00000491421 TARBP1Q13395 1621 aaKnown RBP14.82□□□□□ -0.04
LSM2-213ENST00000491421 TRIM41Q8WV44 630 aa14.81□□□□□ -0.04
LSM2-213ENST00000491421 AQRO60306 1485 aaKnown RBP eCLIP14.81□□□□□ -0.043e-9■■■■■ 27.4
LSM2-213ENST00000491421 SOGA1O94964 1423 aa14.8□□□□□ -0.04
LSM2-213ENST00000491421 RAD54L2Q9Y4B4 1467 aa14.8□□□□□ -0.04
LSM2-213ENST00000491421 CUX1P39880 1505 aa14.78□□□□□ -0.04
LSM2-213ENST00000491421 FGD5Q6ZNL6 1462 aa14.78□□□□□ -0.04
LSM2-213ENST00000491421 TDRD9Q8NDG6 1382 aaKnown RBP14.75□□□□□ -0.05
LSM2-213ENST00000491421 FBLN2P98095 1184 aa14.71□□□□□ -0.05
LSM2-213ENST00000491421 WDR97A6NE52 1622 aa14.7□□□□□ -0.06
LSM2-213ENST00000491421 AEBP2Q6ZN18 517 aaPredicted RBP14.67□□□□□ -0.06
LSM2-213ENST00000491421 SNAPC4Q5SXM2 1469 aa14.67□□□□□ -0.06
LSM2-213ENST00000491421 GRIN2BQ13224 1484 aa14.65□□□□□ -0.06
LSM2-213ENST00000491421 CHD1O14646 1710 aa14.65□□□□□ -0.06
LSM2-213ENST00000491421 RIMBP3CA6NJZ7 1639 aa14.65□□□□□ -0.06
LSM2-213ENST00000491421 RIMBP3BA6NNM3 1639 aa14.65□□□□□ -0.06
LSM2-213ENST00000491421 RIMBP3Q9UFD9 1639 aa14.65□□□□□ -0.06
LSM2-213ENST00000491421 ARHGEF11O15085 1522 aa14.64□□□□□ -0.07
LSM2-213ENST00000491421 MAGI1Q96QZ7 1491 aaPredicted RBP14.63□□□□□ -0.07
LSM2-213ENST00000491421 ABCA10Q8WWZ4 1543 aa14.62□□□□□ -0.07
LSM2-213ENST00000491421 CHMP7Q8WUX9 453 aaPredicted RBP14.62□□□□□ -0.07
LSM2-213ENST00000491421 WRNQ14191 1432 aaPredicted RBP eCLIP14.61□□□□□ -0.07
LSM2-213ENST00000491421 GAPVD1Q14C86 1478 aa14.61□□□□□ -0.07
LSM2-213ENST00000491421 SYNJ2O15056 1496 aa14.58□□□□□ -0.08
LSM2-213ENST00000491421 TOP2BQ02880 1626 aa14.58□□□□□ -0.08
LSM2-213ENST00000491421 SYNJ1O43426 1573 aa14.56□□□□□ -0.08
LSM2-213ENST00000491421 ABCA5Q8WWZ7 1642 aa14.56□□□□□ -0.08
LSM2-213ENST00000491421 BIVM-ERCC5R4GMW8 1640 aa14.56□□□□□ -0.08
LSM2-213ENST00000491421 CYB5RLQ6IPT4 315 aa14.54□□□□□ -0.08
LSM2-213ENST00000491421 PBRM1Q86U86 1689 aa14.54□□□□□ -0.08
LSM2-213ENST00000491421 CLASP1Q7Z460 1538 aa14.53□□□□□ -0.08
LSM2-213ENST00000491421 ARAP1Q96P48 1450 aa14.51□□□□□ -0.09
LSM2-213ENST00000491421 GRIN2AQ12879 1464 aa14.46□□□□□ -0.09
LSM2-213ENST00000491421 ADAMTS12P58397 1594 aa14.46□□□□□ -0.09
LSM2-213ENST00000491421 FHAD1B1AJZ9 1412 aa14.45□□□□□ -0.1
LSM2-213ENST00000491421 ERICH3Q5RHP9 1530 aa14.44□□□□□ -0.1
LSM2-213ENST00000491421 NUP160Q12769 1436 aa14.41□□□□□ -0.1
LSM2-213ENST00000491421 CEP170Q5SW79 1584 aa14.39□□□□□ -0.11
LSM2-213ENST00000491421 TRHP20396 242 aaPredicted RBP14.34□□□□□ -0.11
LSM2-213ENST00000491421 KIF27Q86VH2 1401 aa14.33□□□□□ -0.11
LSM2-213ENST00000491421 ERCC6L2Q5T890 1561 aa14.31□□□□□ -0.12
LSM2-213ENST00000491421 IGF1RP08069 1367 aa14.3□□□□□ -0.12
LSM2-213ENST00000491421 SHROOM2Q13796 1616 aa14.29□□□□□ -0.12
LSM2-213ENST00000491421 PRG4Q92954 1404 aaPredicted RBP14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 161.5 ms