RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 NISCHQ9Y2I1 1504 aa39.4■■■■□ 3.9
SMPD4-220ENST00000491319 CCDC180Q9P1Z9 1646 aa35.39■■■■□ 3.26
SMPD4-220ENST00000491319 ABCC9O60706 1549 aa35.17■■■■□ 3.22
SMPD4-220ENST00000491319 RB1CC1Q8TDY2 1594 aa33.55■■■□□ 2.96
SMPD4-220ENST00000491319 NACADO15069 1562 aa33.34■■■□□ 2.93
SMPD4-220ENST00000491319 DCAF8L2P0C7V8 631 aa33.08■■■□□ 2.89
SMPD4-220ENST00000491319 UNC13AQ9UPW8 1703 aa32.98■■■□□ 2.87
SMPD4-220ENST00000491319 MYO15BQ96JP2 1530 aa32.9■■■□□ 2.86
SMPD4-220ENST00000491319 DNAJC5BQ9UF47 199 aa32.79■■■□□ 2.84
SMPD4-220ENST00000491319 ZCCHC6Q5VYS8 1495 aaKnown RBP32.71■■■□□ 2.83
SMPD4-220ENST00000491319 PABPN1Q86U42 306 aaKnown RBP eCLIP32.69■■■□□ 2.821e-6■■■□□ 16.2
SMPD4-220ENST00000491319 BICRAQ9NZM4 1560 aa32.62■■■□□ 2.81
SMPD4-220ENST00000491319 DCAF1Q9Y4B6 1507 aa32.55■■■□□ 2.8
SMPD4-220ENST00000491319 SCRIBQ14160 1630 aa32.25■■■□□ 2.75
SMPD4-220ENST00000491319 SHROOM4Q9ULL8 1493 aa32.12■■■□□ 2.73
SMPD4-220ENST00000491319 CC2D2AQ9P2K1 1620 aa31.83■■■□□ 2.69
SMPD4-220ENST00000491319 EIF4G1Q04637 1599 aaKnown RBP31.78■■■□□ 2.68
SMPD4-220ENST00000491319 CECR2Q9BXF3 1484 aa31.65■■■□□ 2.66
SMPD4-220ENST00000491319 SMARCA4P51532 1647 aa30.76■■■□□ 2.52
SMPD4-220ENST00000491319 NCAPD3P42695 1498 aa30.73■■■□□ 2.51
SMPD4-220ENST00000491319 ATAD2BQ9ULI0 1458 aa30.69■■■□□ 2.5
SMPD4-220ENST00000491319 SMARCA2P51531 1590 aa30.63■■■□□ 2.49
SMPD4-220ENST00000491319 HMGXB3Q12766 1538 aa30.59■■■□□ 2.49
SMPD4-220ENST00000491319 BAZ1AQ9NRL2 1556 aaPredicted RBP30.58■■■□□ 2.49
SMPD4-220ENST00000491319 PEG3Q9GZU2 1588 aa30.44■■■□□ 2.46
SMPD4-220ENST00000491319 BAZ1BQ9UIG0 1483 aaKnown RBP30.41■■■□□ 2.46
SMPD4-220ENST00000491319 MROH2BQ7Z745 1585 aa30.38■■■□□ 2.45
SMPD4-220ENST00000491319 ERCC6Q03468 1493 aa30.34■■■□□ 2.45
SMPD4-220ENST00000491319 NESP48681 1621 aa30.27■■■□□ 2.44
SMPD4-220ENST00000491319 CUX2O14529 1486 aa30.24■■■□□ 2.43
SMPD4-220ENST00000491319 LAMC3Q9Y6N6 1575 aa30.09■■■□□ 2.41
SMPD4-220ENST00000491319 WIZO95785 1651 aa30.08■■■□□ 2.41
SMPD4-220ENST00000491319 THOC2Q8NI27 1593 aaKnown RBP30.01■■■□□ 2.39
SMPD4-220ENST00000491319 KIF21AQ7Z4S6 1674 aa30■■■□□ 2.39
SMPD4-220ENST00000491319 DNAJC5Q9H3Z4 198 aa29.97■■■□□ 2.39
SMPD4-220ENST00000491319 PDS5BQ9NTI5 1447 aa29.82■■■□□ 2.36
SMPD4-220ENST00000491319 CADPSQ9ULU8 1353 aa29.78■■■□□ 2.36
SMPD4-220ENST00000491319 RSF1Q96T23 1441 aaPredicted RBP29.75■■■□□ 2.35
SMPD4-220ENST00000491319 TOP2AP11388 1531 aaKnown RBP29.67■■■□□ 2.34
SMPD4-220ENST00000491319 MRC2Q9UBG0 1479 aa29.61■■■□□ 2.33
SMPD4-220ENST00000491319 WDR62O43379 1518 aa29.57■■■□□ 2.32
SMPD4-220ENST00000491319 CEP164Q9UPV0 1460 aa29.54■■■□□ 2.32
SMPD4-220ENST00000491319 CFTRP13569 1480 aa29.51■■■□□ 2.31
SMPD4-220ENST00000491319 FANCD2Q9BXW9 1451 aa29.5■■■□□ 2.31
SMPD4-220ENST00000491319 PRDM2Q13029 1718 aa29.45■■■□□ 2.3
SMPD4-220ENST00000491319 URB2Q14146 1524 aaKnown RBP29.28■■■□□ 2.28
SMPD4-220ENST00000491319 CCDC88BA6NC98 1476 aa29.28■■■□□ 2.28
SMPD4-220ENST00000491319 TOPBP1Q92547 1522 aa28.98■■■□□ 2.23
SMPD4-220ENST00000491319 DNMBPQ6XZF7 1577 aa28.91■■■□□ 2.22
SMPD4-220ENST00000491319 IFT140Q96RY7 1462 aa28.91■■■□□ 2.22
SMPD4-220ENST00000491319 ZNF608Q9ULD9 1512 aaPredicted RBP28.89■■■□□ 2.21
SMPD4-220ENST00000491319 ABCC8Q09428 1581 aa28.87■■■□□ 2.21
SMPD4-220ENST00000491319 EIF4G3O43432 1585 aaKnown RBP28.81■■■□□ 2.2
SMPD4-220ENST00000491319 OSCARQ8IYS5 282 aa28.78■■■□□ 2.2
SMPD4-220ENST00000491319 TRIM41Q8WV44 630 aa28.76■■■□□ 2.19
SMPD4-220ENST00000491319 TARBP1Q13395 1621 aaKnown RBP28.76■■■□□ 2.19
SMPD4-220ENST00000491319 POLA1P09884 1462 aaPredicted RBP28.69■■■□□ 2.18
SMPD4-220ENST00000491319 CHD1O14646 1710 aa28.62■■■□□ 2.17
SMPD4-220ENST00000491319 AQRO60306 1485 aaKnown RBP eCLIP28.6■■■□□ 2.171e-6■■□□□ 14.5
SMPD4-220ENST00000491319 RAD54L2Q9Y4B4 1467 aa28.57■■■□□ 2.16
SMPD4-220ENST00000491319 RIMBP3CA6NJZ7 1639 aa28.57■■■□□ 2.16
SMPD4-220ENST00000491319 RIMBP3BA6NNM3 1639 aa28.57■■■□□ 2.16
SMPD4-220ENST00000491319 RIMBP3Q9UFD9 1639 aa28.57■■■□□ 2.16
SMPD4-220ENST00000491319 CUX1P39880 1505 aa28.55■■■□□ 2.16
SMPD4-220ENST00000491319 FGD5Q6ZNL6 1462 aa28.53■■■□□ 2.16
SMPD4-220ENST00000491319 SOGA1O94964 1423 aa28.5■■■□□ 2.15
SMPD4-220ENST00000491319 SUPT5HO00267 1087 aaKnown RBP28.49■■■□□ 2.15
SMPD4-220ENST00000491319 ARHGEF11O15085 1522 aa28.45■■■□□ 2.15
SMPD4-220ENST00000491319 WDR97A6NE52 1622 aa28.45■■■□□ 2.14
SMPD4-220ENST00000491319 TDRD9Q8NDG6 1382 aaKnown RBP28.43■■■□□ 2.14
SMPD4-220ENST00000491319 SNAPC4Q5SXM2 1469 aa28.35■■■□□ 2.13
SMPD4-220ENST00000491319 FBLN2P98095 1184 aa28.33■■■□□ 2.13
SMPD4-220ENST00000491319 PBRM1Q86U86 1689 aa28.32■■■□□ 2.12
SMPD4-220ENST00000491319 MAGI1Q96QZ7 1491 aaPredicted RBP28.27■■■□□ 2.12
SMPD4-220ENST00000491319 GRIN2BQ13224 1484 aa28.26■■■□□ 2.11
SMPD4-220ENST00000491319 ABCA5Q8WWZ7 1642 aa28.22■■■□□ 2.11
SMPD4-220ENST00000491319 CLASP1Q7Z460 1538 aa28.2■■■□□ 2.1
SMPD4-220ENST00000491319 ABCA10Q8WWZ4 1543 aa28.2■■■□□ 2.1
SMPD4-220ENST00000491319 GAPVD1Q14C86 1478 aa28.19■■■□□ 2.1
SMPD4-220ENST00000491319 SYNJ1O43426 1573 aa28.19■■■□□ 2.1
SMPD4-220ENST00000491319 BIVM-ERCC5R4GMW8 1640 aa28.18■■■□□ 2.1
SMPD4-220ENST00000491319 ARAP1Q96P48 1450 aa28.18■■■□□ 2.1
SMPD4-220ENST00000491319 SYNJ2O15056 1496 aa28.16■■■□□ 2.1
SMPD4-220ENST00000491319 TOP2BQ02880 1626 aa28.14■■■□□ 2.09
SMPD4-220ENST00000491319 CHMP7Q8WUX9 453 aaPredicted RBP28.13■■■□□ 2.09
SMPD4-220ENST00000491319 CYB5RLQ6IPT4 315 aa28.12■■■□□ 2.09
SMPD4-220ENST00000491319 WRNQ14191 1432 aaPredicted RBP eCLIP28.07■■■□□ 2.08
SMPD4-220ENST00000491319 ADAMTS12P58397 1594 aa27.99■■■□□ 2.07
SMPD4-220ENST00000491319 GRIN2AQ12879 1464 aa27.93■■■□□ 2.06
SMPD4-220ENST00000491319 CEP170Q5SW79 1584 aa27.87■■■□□ 2.05
SMPD4-220ENST00000491319 ERICH3Q5RHP9 1530 aa27.86■■■□□ 2.05
SMPD4-220ENST00000491319 FHAD1B1AJZ9 1412 aa27.82■■■□□ 2.04
SMPD4-220ENST00000491319 NUP160Q12769 1436 aa27.82■■■□□ 2.04
SMPD4-220ENST00000491319 ERCC6L2Q5T890 1561 aa27.79■■■□□ 2.04
SMPD4-220ENST00000491319 TRHP20396 242 aaPredicted RBP27.77■■■□□ 2.04
SMPD4-220ENST00000491319 SHROOM2Q13796 1616 aa27.75■■■□□ 2.03
SMPD4-220ENST00000491319 RUSC2Q8N2Y8 1516 aa27.62■■■□□ 2.01
SMPD4-220ENST00000491319 CUL7Q14999 1698 aa27.54■■■□□ 2
SMPD4-220ENST00000491319 PRG4Q92954 1404 aaPredicted RBP27.51■■□□□ 1.99
SMPD4-220ENST00000491319 KIF27Q86VH2 1401 aa27.5■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms