RNA–Protein interactions for RNA: ENST00000490081.5

HDAC1-210, Transcript of histone deacetylase 1, humanhuman

TSL 3

Gene HDAC1, Length 1,047 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-210ENST00000490081 NISCHQ9Y2I1 1504 aa29.76■■■□□ 2.36
HDAC1-210ENST00000490081 CCDC180Q9P1Z9 1646 aa26.35■■□□□ 1.81
HDAC1-210ENST00000490081 ABCC9O60706 1549 aa25.7■■□□□ 1.7
HDAC1-210ENST00000490081 ZCCHC6Q5VYS8 1495 aaKnown RBP24.85■■□□□ 1.57
HDAC1-210ENST00000490081 MYO15BQ96JP2 1530 aa24.76■■□□□ 1.55
HDAC1-210ENST00000490081 DCAF1Q9Y4B6 1507 aa24.75■■□□□ 1.55
HDAC1-210ENST00000490081 NACADO15069 1562 aa24.69■■□□□ 1.54
HDAC1-210ENST00000490081 RB1CC1Q8TDY2 1594 aa24.59■■□□□ 1.53
HDAC1-210ENST00000490081 DCAF8L2P0C7V8 631 aa24.55■■□□□ 1.52
HDAC1-210ENST00000490081 DNAJC5BQ9UF47 199 aa24.12■■□□□ 1.45
HDAC1-210ENST00000490081 UNC13AQ9UPW8 1703 aa24.01■■□□□ 1.43
HDAC1-210ENST00000490081 PABPN1Q86U42 306 aaKnown RBP eCLIP23.93■■□□□ 1.42
HDAC1-210ENST00000490081 SCRIBQ14160 1630 aa23.9■■□□□ 1.42
HDAC1-210ENST00000490081 BICRAQ9NZM4 1560 aa23.86■■□□□ 1.41
HDAC1-210ENST00000490081 SHROOM4Q9ULL8 1493 aa23.72■■□□□ 1.39
HDAC1-210ENST00000490081 CC2D2AQ9P2K1 1620 aa23.25■■□□□ 1.31
HDAC1-210ENST00000490081 EIF4G1Q04637 1599 aaKnown RBP23.23■■□□□ 1.31
HDAC1-210ENST00000490081 CECR2Q9BXF3 1484 aa23.15■■□□□ 1.3
HDAC1-210ENST00000490081 BAZ1AQ9NRL2 1556 aaPredicted RBP23.05■■□□□ 1.28
HDAC1-210ENST00000490081 SMARCA4P51532 1647 aa22.99■■□□□ 1.27
HDAC1-210ENST00000490081 MROH2BQ7Z745 1585 aa22.89■■□□□ 1.25
HDAC1-210ENST00000490081 PEG3Q9GZU2 1588 aa22.85■■□□□ 1.25
HDAC1-210ENST00000490081 SMARCA2P51531 1590 aa22.8■■□□□ 1.24
HDAC1-210ENST00000490081 ATAD2BQ9ULI0 1458 aa22.79■■□□□ 1.24
HDAC1-210ENST00000490081 RSF1Q96T23 1441 aaPredicted RBP22.79■■□□□ 1.24
HDAC1-210ENST00000490081 NCAPD3P42695 1498 aa22.79■■□□□ 1.24
HDAC1-210ENST00000490081 HMGXB3Q12766 1538 aa22.68■■□□□ 1.22
HDAC1-210ENST00000490081 WIZO95785 1651 aa22.64■■□□□ 1.21
HDAC1-210ENST00000490081 BAZ1BQ9UIG0 1483 aaKnown RBP22.59■■□□□ 1.21
HDAC1-210ENST00000490081 TOP2AP11388 1531 aaKnown RBP22.47■■□□□ 1.19
HDAC1-210ENST00000490081 SUPT5HO00267 1087 aaKnown RBP22.33■■□□□ 1.17
HDAC1-210ENST00000490081 CCDC88BA6NC98 1476 aa22.2■■□□□ 1.14
HDAC1-210ENST00000490081 CUX2O14529 1486 aa22.15■■□□□ 1.14
HDAC1-210ENST00000490081 ERCC6Q03468 1493 aa22.13■■□□□ 1.13
HDAC1-210ENST00000490081 NESP48681 1621 aa22.13■■□□□ 1.13
HDAC1-210ENST00000490081 LAMC3Q9Y6N6 1575 aa22.11■■□□□ 1.13
HDAC1-210ENST00000490081 CADPSQ9ULU8 1353 aa22.11■■□□□ 1.13
HDAC1-210ENST00000490081 DNAJC5Q9H3Z4 198 aa22.07■■□□□ 1.12
HDAC1-210ENST00000490081 CFTRP13569 1480 aa22.05■■□□□ 1.12
HDAC1-210ENST00000490081 PDS5BQ9NTI5 1447 aa21.93■■□□□ 1.1
HDAC1-210ENST00000490081 PRDM2Q13029 1718 aa21.92■■□□□ 1.1
HDAC1-210ENST00000490081 THOC2Q8NI27 1593 aaKnown RBP21.91■■□□□ 1.1
HDAC1-210ENST00000490081 KIF21AQ7Z4S6 1674 aa21.84■■□□□ 1.09
HDAC1-210ENST00000490081 FANCD2Q9BXW9 1451 aa21.8■■□□□ 1.08
HDAC1-210ENST00000490081 CEP164Q9UPV0 1460 aa21.73■■□□□ 1.07
HDAC1-210ENST00000490081 MRC2Q9UBG0 1479 aa21.64■■□□□ 1.06
HDAC1-210ENST00000490081 ABCC8Q09428 1581 aa21.62■■□□□ 1.05
HDAC1-210ENST00000490081 WDR62O43379 1518 aa21.62■■□□□ 1.05
HDAC1-210ENST00000490081 URB2Q14146 1524 aaKnown RBP21.55■■□□□ 1.04
HDAC1-210ENST00000490081 DNMBPQ6XZF7 1577 aa21.52■■□□□ 1.04
HDAC1-210ENST00000490081 TOPBP1Q92547 1522 aa21.5■■□□□ 1.03
HDAC1-210ENST00000490081 WRNQ14191 1432 aaPredicted RBP eCLIP21.46■■□□□ 1.03
HDAC1-210ENST00000490081 CUX1P39880 1505 aa21.45■■□□□ 1.02
HDAC1-210ENST00000490081 TOP2BQ02880 1626 aa21.4■■□□□ 1.02
HDAC1-210ENST00000490081 BIVM-ERCC5R4GMW8 1640 aa21.4■■□□□ 1.02
HDAC1-210ENST00000490081 SYNJ1O43426 1573 aa21.35■■□□□ 1.01
HDAC1-210ENST00000490081 POLA1P09884 1462 aaPredicted RBP21.33■■□□□ 1.01
HDAC1-210ENST00000490081 FGD5Q6ZNL6 1462 aa21.31■■□□□ 1
HDAC1-210ENST00000490081 IFT140Q96RY7 1462 aa21.31■■□□□ 1
HDAC1-210ENST00000490081 AEBP2Q6ZN18 517 aaPredicted RBP21.27■■□□□ 1
HDAC1-210ENST00000490081 SOGA1O94964 1423 aa21.27■■□□□ 1
HDAC1-210ENST00000490081 TARBP1Q13395 1621 aaKnown RBP21.26■□□□□ 0.99
HDAC1-210ENST00000490081 WDR97A6NE52 1622 aa21.2■□□□□ 0.98
HDAC1-210ENST00000490081 ABCA10Q8WWZ4 1543 aa21.19■□□□□ 0.98
HDAC1-210ENST00000490081 RAD54L2Q9Y4B4 1467 aa21.19■□□□□ 0.98
HDAC1-210ENST00000490081 CHIC1Q5VXU3 224 aa21.16■□□□□ 0.98
HDAC1-210ENST00000490081 TRIM41Q8WV44 630 aa21.16■□□□□ 0.98
HDAC1-210ENST00000490081 OSCARQ8IYS5 282 aa21.12■□□□□ 0.97
HDAC1-210ENST00000490081 ZNF608Q9ULD9 1512 aaPredicted RBP21.12■□□□□ 0.97
HDAC1-210ENST00000490081 ABCA5Q8WWZ7 1642 aa21.05■□□□□ 0.96
HDAC1-210ENST00000490081 TDRD9Q8NDG6 1382 aaKnown RBP21.05■□□□□ 0.96
HDAC1-210ENST00000490081 EIF4G3O43432 1585 aaKnown RBP21.05■□□□□ 0.96
HDAC1-210ENST00000490081 AQRO60306 1485 aaKnown RBP eCLIP21.04■□□□□ 0.962e-8■■■■■ 33.4
HDAC1-210ENST00000490081 GAPVD1Q14C86 1478 aa21.02■□□□□ 0.96
HDAC1-210ENST00000490081 KIF27Q86VH2 1401 aa21■□□□□ 0.95
HDAC1-210ENST00000490081 GRIN2BQ13224 1484 aa20.99■□□□□ 0.95
HDAC1-210ENST00000490081 ERICH3Q5RHP9 1530 aa20.95■□□□□ 0.94
HDAC1-210ENST00000490081 PBRM1Q86U86 1689 aa20.93■□□□□ 0.94
HDAC1-210ENST00000490081 MAGI1Q96QZ7 1491 aaPredicted RBP20.92■□□□□ 0.94
HDAC1-210ENST00000490081 IGF1RP08069 1367 aa20.9■□□□□ 0.94
HDAC1-210ENST00000490081 EEA1Q15075 1411 aa20.89■□□□□ 0.94
HDAC1-210ENST00000490081 RIMBP3CA6NJZ7 1639 aa20.87■□□□□ 0.93
HDAC1-210ENST00000490081 RIMBP3BA6NNM3 1639 aa20.87■□□□□ 0.93
HDAC1-210ENST00000490081 RIMBP3Q9UFD9 1639 aa20.87■□□□□ 0.93
HDAC1-210ENST00000490081 RUSC2Q8N2Y8 1516 aa20.84■□□□□ 0.93
HDAC1-210ENST00000490081 SNAPC4Q5SXM2 1469 aa20.84■□□□□ 0.93
HDAC1-210ENST00000490081 CHD1O14646 1710 aa20.82■□□□□ 0.92
HDAC1-210ENST00000490081 FHAD1B1AJZ9 1412 aa20.82■□□□□ 0.92
HDAC1-210ENST00000490081 CUL7Q14999 1698 aa20.82■□□□□ 0.92
HDAC1-210ENST00000490081 SYNJ2O15056 1496 aa20.81■□□□□ 0.92
HDAC1-210ENST00000490081 ARHGEF11O15085 1522 aa20.8■□□□□ 0.92
HDAC1-210ENST00000490081 ADAMTS12P58397 1594 aa20.79■□□□□ 0.92
HDAC1-210ENST00000490081 CSRNP3Q8WYN3 585 aa20.77■□□□□ 0.92
HDAC1-210ENST00000490081 CARMIL1Q5VZK9 1371 aa20.75■□□□□ 0.91
HDAC1-210ENST00000490081 CHMP7Q8WUX9 453 aaPredicted RBP20.74■□□□□ 0.91
HDAC1-210ENST00000490081 PRXQ9BXM0 1461 aa20.71■□□□□ 0.91
HDAC1-210ENST00000490081 GRIN2AQ12879 1464 aa20.7■□□□□ 0.9
HDAC1-210ENST00000490081 RAPGEF2Q9Y4G8 1499 aa20.68■□□□□ 0.9
HDAC1-210ENST00000490081 FBLN2P98095 1184 aa20.67■□□□□ 0.9
HDAC1-210ENST00000490081 NUP160Q12769 1436 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms