RNA–Protein interactions for RNA: ENST00000489870.1

CCT3-213, Transcript of chaperonin containing TCP1 subunit 3, humanhuman

TSL 2

Gene CCT3, Length 827 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCT3-213ENST00000489870 NISCHQ9Y2I1 1504 aa23.69■■□□□ 1.38
CCT3-213ENST00000489870 AEBP2Q6ZN18 517 aaPredicted RBP21.26■□□□□ 0.99
CCT3-213ENST00000489870 CCDC180Q9P1Z9 1646 aa21.26■□□□□ 0.99
CCT3-213ENST00000489870 ABCC9O60706 1549 aa21■□□□□ 0.95
CCT3-213ENST00000489870 CHIC1Q5VXU3 224 aa20.44■□□□□ 0.86
CCT3-213ENST00000489870 RB1CC1Q8TDY2 1594 aa20.19■□□□□ 0.82
CCT3-213ENST00000489870 NACADO15069 1562 aa20.12■□□□□ 0.81
CCT3-213ENST00000489870 MYO15BQ96JP2 1530 aa19.98■□□□□ 0.79
CCT3-213ENST00000489870 DCAF8L2P0C7V8 631 aa19.86■□□□□ 0.77
CCT3-213ENST00000489870 DCAF1Q9Y4B6 1507 aa19.7■□□□□ 0.74
CCT3-213ENST00000489870 DNAJC5BQ9UF47 199 aa19.66■□□□□ 0.74
CCT3-213ENST00000489870 ZCCHC6Q5VYS8 1495 aaKnown RBP19.61■□□□□ 0.73
CCT3-213ENST00000489870 UNC13AQ9UPW8 1703 aa19.59■□□□□ 0.73
CCT3-213ENST00000489870 PABPN1Q86U42 306 aaKnown RBP eCLIP19.56■□□□□ 0.72
CCT3-213ENST00000489870 BICRAQ9NZM4 1560 aa19.49■□□□□ 0.71
CCT3-213ENST00000489870 SHROOM4Q9ULL8 1493 aa19.49■□□□□ 0.71
CCT3-213ENST00000489870 SCRIBQ14160 1630 aa19.16■□□□□ 0.66
CCT3-213ENST00000489870 EIF4G1Q04637 1599 aaKnown RBP19.04■□□□□ 0.64
CCT3-213ENST00000489870 CC2D2AQ9P2K1 1620 aa19.03■□□□□ 0.64
CCT3-213ENST00000489870 CECR2Q9BXF3 1484 aa18.99■□□□□ 0.63
CCT3-213ENST00000489870 NCAPD3P42695 1498 aa18.58■□□□□ 0.57
CCT3-213ENST00000489870 SMARCA2P51531 1590 aa18.47■□□□□ 0.55
CCT3-213ENST00000489870 ATAD2BQ9ULI0 1458 aa18.45■□□□□ 0.54
CCT3-213ENST00000489870 BAZ1AQ9NRL2 1556 aaPredicted RBP18.41■□□□□ 0.54
CCT3-213ENST00000489870 SMARCA4P51532 1647 aa18.41■□□□□ 0.54
CCT3-213ENST00000489870 HMGXB3Q12766 1538 aa18.4■□□□□ 0.54
CCT3-213ENST00000489870 PEG3Q9GZU2 1588 aa18.34■□□□□ 0.53
CCT3-213ENST00000489870 CUX2O14529 1486 aa18.26■□□□□ 0.51
CCT3-213ENST00000489870 BAZ1BQ9UIG0 1483 aaKnown RBP18.26■□□□□ 0.51
CCT3-213ENST00000489870 ERCC6Q03468 1493 aa18.2■□□□□ 0.5
CCT3-213ENST00000489870 DNAJC5Q9H3Z4 198 aa18.17■□□□□ 0.5
CCT3-213ENST00000489870 MROH2BQ7Z745 1585 aa18.16■□□□□ 0.5
CCT3-213ENST00000489870 SENP3Q9H4L4 574 aaPredicted RBP18.14■□□□□ 0.49
CCT3-213ENST00000489870 LAMC3Q9Y6N6 1575 aa18.12■□□□□ 0.49
CCT3-213ENST00000489870 PDS5BQ9NTI5 1447 aa18.05■□□□□ 0.48
CCT3-213ENST00000489870 NESP48681 1621 aa18.04■□□□□ 0.48
CCT3-213ENST00000489870 CADPSQ9ULU8 1353 aa18■□□□□ 0.47
CCT3-213ENST00000489870 PHF23Q9BUL5 403 aaPredicted RBP17.98■□□□□ 0.47
CCT3-213ENST00000489870 WIZO95785 1651 aa17.9■□□□□ 0.46
CCT3-213ENST00000489870 THOC2Q8NI27 1593 aaKnown RBP17.89■□□□□ 0.45
CCT3-213ENST00000489870 RSF1Q96T23 1441 aaPredicted RBP17.88■□□□□ 0.45
CCT3-213ENST00000489870 KIF21AQ7Z4S6 1674 aa17.82■□□□□ 0.44
CCT3-213ENST00000489870 CFTRP13569 1480 aa17.79■□□□□ 0.44
CCT3-213ENST00000489870 MRC2Q9UBG0 1479 aa17.79■□□□□ 0.44
CCT3-213ENST00000489870 TOP2AP11388 1531 aaKnown RBP17.77■□□□□ 0.44
CCT3-213ENST00000489870 WDR62O43379 1518 aa17.74■□□□□ 0.43
CCT3-213ENST00000489870 CEP164Q9UPV0 1460 aa17.73■□□□□ 0.43
CCT3-213ENST00000489870 FANCD2Q9BXW9 1451 aa17.71■□□□□ 0.43
CCT3-213ENST00000489870 CCDC88BA6NC98 1476 aa17.57■□□□□ 0.4
CCT3-213ENST00000489870 PRDM2Q13029 1718 aa17.56■□□□□ 0.4
CCT3-213ENST00000489870 ABCC8Q09428 1581 aa17.53■□□□□ 0.4
CCT3-213ENST00000489870 URB2Q14146 1524 aaKnown RBP17.51■□□□□ 0.39
CCT3-213ENST00000489870 OSCARQ8IYS5 282 aa17.47■□□□□ 0.39
CCT3-213ENST00000489870 IFT140Q96RY7 1462 aa17.43■□□□□ 0.38
CCT3-213ENST00000489870 TOPBP1Q92547 1522 aa17.37■□□□□ 0.37
CCT3-213ENST00000489870 DNMBPQ6XZF7 1577 aa17.33■□□□□ 0.37
CCT3-213ENST00000489870 ZNF608Q9ULD9 1512 aaPredicted RBP17.24■□□□□ 0.35
CCT3-213ENST00000489870 TARBP1Q13395 1621 aaKnown RBP17.21■□□□□ 0.35
CCT3-213ENST00000489870 TRIM41Q8WV44 630 aa17.2■□□□□ 0.34
CCT3-213ENST00000489870 WDR97A6NE52 1622 aa17.2■□□□□ 0.34
CCT3-213ENST00000489870 POLA1P09884 1462 aaPredicted RBP17.19■□□□□ 0.34
CCT3-213ENST00000489870 SOGA1O94964 1423 aa17.18■□□□□ 0.34
CCT3-213ENST00000489870 EIF4G3O43432 1585 aaKnown RBP17.16■□□□□ 0.34
CCT3-213ENST00000489870 AQRO60306 1485 aaKnown RBP eCLIP17.14■□□□□ 0.337e-11■■■■□ 25.9
CCT3-213ENST00000489870 FGD5Q6ZNL6 1462 aa17.07■□□□□ 0.32
CCT3-213ENST00000489870 RAD54L2Q9Y4B4 1467 aa17.06■□□□□ 0.32
CCT3-213ENST00000489870 CUX1P39880 1505 aa17.06■□□□□ 0.32
CCT3-213ENST00000489870 TDRD9Q8NDG6 1382 aaKnown RBP17.05■□□□□ 0.32
CCT3-213ENST00000489870 SUPT5HO00267 1087 aaKnown RBP17.05■□□□□ 0.32
CCT3-213ENST00000489870 MAGI1Q96QZ7 1491 aaPredicted RBP17.05■□□□□ 0.32
CCT3-213ENST00000489870 RIMBP3CA6NJZ7 1639 aa17.04■□□□□ 0.32
CCT3-213ENST00000489870 RIMBP3BA6NNM3 1639 aa17.04■□□□□ 0.32
CCT3-213ENST00000489870 RIMBP3Q9UFD9 1639 aa17.04■□□□□ 0.32
CCT3-213ENST00000489870 ARHGEF11O15085 1522 aa17.04■□□□□ 0.32
CCT3-213ENST00000489870 GRIN2BQ13224 1484 aa17.03■□□□□ 0.32
CCT3-213ENST00000489870 FBLN2P98095 1184 aa17.02■□□□□ 0.32
CCT3-213ENST00000489870 CHMP7Q8WUX9 453 aaPredicted RBP17.01■□□□□ 0.31
CCT3-213ENST00000489870 CHD1O14646 1710 aa17■□□□□ 0.31
CCT3-213ENST00000489870 ABCA10Q8WWZ4 1543 aa16.97■□□□□ 0.31
CCT3-213ENST00000489870 FOXD1Q16676 465 aa16.96■□□□□ 0.31
CCT3-213ENST00000489870 SYNJ2O15056 1496 aa16.96■□□□□ 0.31
CCT3-213ENST00000489870 WRNQ14191 1432 aaPredicted RBP eCLIP16.96■□□□□ 0.3
CCT3-213ENST00000489870 GAPVD1Q14C86 1478 aa16.95■□□□□ 0.3
CCT3-213ENST00000489870 SNAPC4Q5SXM2 1469 aa16.94■□□□□ 0.3
CCT3-213ENST00000489870 CYB5RLQ6IPT4 315 aa16.94■□□□□ 0.3
CCT3-213ENST00000489870 SYNJ1O43426 1573 aa16.93■□□□□ 0.3
CCT3-213ENST00000489870 CLASP1Q7Z460 1538 aa16.89■□□□□ 0.29
CCT3-213ENST00000489870 TOP2BQ02880 1626 aa16.88■□□□□ 0.29
CCT3-213ENST00000489870 ABCA5Q8WWZ7 1642 aa16.86■□□□□ 0.29
CCT3-213ENST00000489870 BIVM-ERCC5R4GMW8 1640 aa16.85■□□□□ 0.29
CCT3-213ENST00000489870 ARAP1Q96P48 1450 aa16.85■□□□□ 0.29
CCT3-213ENST00000489870 PBRM1Q86U86 1689 aa16.85■□□□□ 0.29
CCT3-213ENST00000489870 ERICH3Q5RHP9 1530 aa16.79■□□□□ 0.28
CCT3-213ENST00000489870 FHAD1B1AJZ9 1412 aa16.79■□□□□ 0.28
CCT3-213ENST00000489870 GRIN2AQ12879 1464 aa16.77■□□□□ 0.28
CCT3-213ENST00000489870 NUP160Q12769 1436 aa16.74■□□□□ 0.27
CCT3-213ENST00000489870 ADAMTS12P58397 1594 aa16.71■□□□□ 0.27
CCT3-213ENST00000489870 TRHP20396 242 aaPredicted RBP16.7■□□□□ 0.26
CCT3-213ENST00000489870 SHROOM2Q13796 1616 aa16.63■□□□□ 0.25
CCT3-213ENST00000489870 JPH4Q96JJ6 628 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms